Literature DB >> 20223989

Structural sources of robustness in biochemical reaction networks.

Guy Shinar1, Martin Feinberg.   

Abstract

In vivo variations in the concentrations of biomolecular species are inevitable. These variations in turn propagate along networks of chemical reactions and modify the concentrations of still other species, which influence biological activity. Because excessive variations in the amounts of certain active species might hamper cell function, regulation systems have evolved that act to maintain concentrations within tight bounds. We identify simple yet subtle structural attributes that impart concentration robustness to any mass-action network possessing them. We thereby describe a large class of robustness-inducing networks that already embraces two quite different biochemical modules for which concentration robustness has been observed experimentally: the Escherichia coli osmoregulation system EnvZ-OmpR and the glyoxylate bypass control system isocitrate dehydrogenase kinase-phosphatase-isocitrate dehydrogenase. The structural attributes identified here might confer robustness far more broadly.

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Year:  2010        PMID: 20223989     DOI: 10.1126/science.1183372

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  73 in total

1.  Systems biology: The cost of feedback control.

Authors:  Li Sun; Attila Becskei
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

2.  Interdependence of behavioural variability and response to small stimuli in bacteria.

Authors:  Heungwon Park; William Pontius; Calin C Guet; John F Marko; Thierry Emonet; Philippe Cluzel
Journal:  Nature       Date:  2010-11-14       Impact factor: 49.962

3.  Computing the structural influence matrix for biological systems.

Authors:  Giulia Giordano; Christian Cuba Samaniego; Elisa Franco; Franco Blanchini
Journal:  J Math Biol       Date:  2015-09-22       Impact factor: 2.259

4.  Simplifying biochemical models with intermediate species.

Authors:  Elisenda Feliu; Carsten Wiuf
Journal:  J R Soc Interface       Date:  2013-07-24       Impact factor: 4.118

5.  Sensitivity and robustness in covalent modification cycles with a bifunctional converter enzyme.

Authors:  Ronny Straube
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

6.  Cellular heterogeneity: do differences make a difference?

Authors:  Steven J Altschuler; Lani F Wu
Journal:  Cell       Date:  2010-05-14       Impact factor: 41.582

7.  Constraints on reciprocal flux sensitivities in biochemical reaction networks.

Authors:  Guy Shinar; Avi Mayo; Haixia Ji; Martin Feinberg
Journal:  Biophys J       Date:  2011-03-16       Impact factor: 4.033

Review 8.  Design principles for robust biochemical reaction networks: what works, what cannot work, and what might almost work.

Authors:  Guy Shinar; Martin Feinberg
Journal:  Math Biosci       Date:  2011-03-04       Impact factor: 2.144

9.  Robustness portraits of diverse biological networks conserved despite order-of-magnitude parameter uncertainty.

Authors:  Anthony R Soltis; Jeffrey J Saucerman
Journal:  Bioinformatics       Date:  2011-08-31       Impact factor: 6.937

10.  Structural properties of the MAPK pathway topologies in PC12 cells.

Authors:  Elisa Franco; Franco Blanchini
Journal:  J Math Biol       Date:  2012-10-25       Impact factor: 2.259

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