Literature DB >> 21367514

Cavity hydration as a gateway to unfolding: an NMR study of hen lysozyme at high pressure and low temperature.

Yuji O Kamatari1, Lorna J Smith, Christopher M Dobson, Kazuyuki Akasaka.   

Abstract

We have used low temperatures (down to -20°C) and high pressures (up to 2000 bar) to populate low-lying excited state conformers of hen lysozyme, and have analyzed their structures site-specifically using (15)N/(1)H two-dimensional HSQC NMR spectroscopy. The resonances of a number of residues were found to be selectively broadened, as the temperature was lowered at a pressure of 2000 bar. The resulting disappearance of cross-peaks includes those of residues in the β-domain of the protein and the cleft between the β- and α-domains, both located close to water-containing cavities. The results indicate that low-lying excited state conformers of hen lysozyme are characterized by slowly fluctuating local conformations around these cavities, attributed to the opportunities for water molecules to penetrate into the cavities. Furthermore, we have found that these water-containing cavities are conserved in similar positions in lysozymes from a range of different biological species, indicating that they are a common evolutionary feature of this family of enzymes.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21367514     DOI: 10.1016/j.bpc.2011.01.009

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  16 in total

1.  Circular dichroism and site-directed spin labeling reveal structural and dynamical features of high-pressure states of myoglobin.

Authors:  Michael T Lerch; Joseph Horwitz; John McCoy; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-18       Impact factor: 11.205

2.  Conformational selection and adaptation to ligand binding in T4 lysozyme cavity mutants.

Authors:  Carlos J López; Zhongyu Yang; Christian Altenbach; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-28       Impact factor: 11.205

3.  Structure-relaxation mechanism for the response of T4 lysozyme cavity mutants to hydrostatic pressure.

Authors:  Michael T Lerch; Carlos J López; Zhongyu Yang; Margaux J Kreitman; Joseph Horwitz; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

4.  Cavity as a source of conformational fluctuation and high-energy state: high-pressure NMR study of a cavity-enlarged mutant of T4 lysozyme.

Authors:  Akihiro Maeno; Daniel Sindhikara; Fumio Hirata; Renee Otten; Frederick W Dahlquist; Shigeyuki Yokoyama; Kazuyuki Akasaka; Frans A A Mulder; Ryo Kitahara
Journal:  Biophys J       Date:  2015-01-06       Impact factor: 4.033

5.  Analysis of O2-binding Sites in Proteins Using Gas-Pressure NMR Spectroscopy: Outer Surface Protein A.

Authors:  Takahiro Kawamura; Takuro Wakamoto; Soichiro Kitazawa; Shun Sakuraba; Tomoshi Kameda; Ryo Kitahara
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

6.  Extensively hydrated but folded: a novel state of globular proteins stabilized at high pressure and low temperature.

Authors:  Sunilkumar Puthenpurackal Narayanan; Akihiro Maeno; Hiroshi Matsuo; Masayuki Oda; Hisayuki Morii; Kazuyuki Akasaka
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

7.  A delicate interplay of structure, dynamics, and thermodynamics for function: a high pressure NMR study of outer surface protein A.

Authors:  Ryo Kitahara; Alana K Simorellis; Kazumi Hata; Akihiro Maeno; Shigeyuki Yokoyama; Shohei Koide; Kazuyuki Akasaka
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

8.  Protection against protein aggregation by alpha-crystallin as a mechanism of preconditioning.

Authors:  Jonathan E Ferns; Christopher S Theisen; Eugene E Fibuch; Norbert W Seidler
Journal:  Neurochem Res       Date:  2011-10-09       Impact factor: 3.996

9.  Mapping protein conformational heterogeneity under pressure with site-directed spin labeling and double electron-electron resonance.

Authors:  Michael T Lerch; Zhongyu Yang; Evan K Brooks; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-18       Impact factor: 11.205

10.  Identification and characterization of a multispecific monoclonal antibody G2 against chicken prion protein.

Authors:  Yuji O Kamatari; Shinri Ohta; Yasuo Inoshima; Masayuki Oda; Takahiro Maruno; Yuji Kobayashi; Naotaka Ishiguro
Journal:  Protein Sci       Date:  2014-06-14       Impact factor: 6.725

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