Literature DB >> 22339877

Extensively hydrated but folded: a novel state of globular proteins stabilized at high pressure and low temperature.

Sunilkumar Puthenpurackal Narayanan1, Akihiro Maeno, Hiroshi Matsuo, Masayuki Oda, Hisayuki Morii, Kazuyuki Akasaka.   

Abstract

We studied conformational fluctuations of the transcription factor c-Myb R2 subdomain (52 residues with three Trp) at high pressure and low temperature (5°C) using two different spectroscopic methods, Trp fluorescence and (1)H NMR, on its chemically stable mutant C130I (pseudo-wild-type (WT(S))), which has a large internal cavity. As pressure was increased from 3 to 300 MPa, the Trp fluorescence λ(max) of WT(S) shifted from 342 to ∼355 nm, clearly showing that the three Trp rings become fully exposed to the polar environment, which usually is taken to indicate that the protein underwent unfolding. In contrast, as pressure was increased from 3 to 300 MPa, the high-field-shifted (1)H NMR signals characteristic of the folded state showed a still higher-field shift, but no significant changes in their intensity. The last result unequivocally shows that the protein remains largely folded at 300 MPa. The apparent discrepancy between the two predictions would only be solved if one were to postulate the existence of an extensively hydrated but folded state in WT(S). Intriguingly, such a state was not found in a cavity-filling mutant of WT(S), C130I/V103L, suggesting that this state is mediated by cavity hydration. The generality and significance of this state in proteins are discussed.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22339877      PMCID: PMC3260745          DOI: 10.1016/j.bpj.2011.12.015

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  15 in total

1.  Exploring the temperature-pressure phase diagram of staphylococcal nuclease.

Authors:  G Panick; G J Vidugiris; R Malessa; G Rapp; R Winter; C A Royer
Journal:  Biochemistry       Date:  1999-03-30       Impact factor: 3.162

Review 2.  Myb and oncogenesis.

Authors:  B Ganter; J S Lipsick
Journal:  Adv Cancer Res       Date:  1999       Impact factor: 6.242

3.  Cavity hydration as a gateway to unfolding: an NMR study of hen lysozyme at high pressure and low temperature.

Authors:  Yuji O Kamatari; Lorna J Smith; Christopher M Dobson; Kazuyuki Akasaka
Journal:  Biophys Chem       Date:  2011-02-03       Impact factor: 2.352

Review 4.  Low-lying excited states of proteins revealed from nonlinear pressure shifts in 1H and 15N NMR.

Authors:  K Akasaka; H Li
Journal:  Biochemistry       Date:  2001-07-31       Impact factor: 3.162

5.  Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.

Authors:  K Ogata; S Morikawa; H Nakamura; H Hojo; S Yoshimura; R Zhang; S Aimoto; Y Ametani; Z Hirata; A Sarai
Journal:  Nat Struct Biol       Date:  1995-04

6.  The cavity in the hydrophobic core of Myb DNA-binding domain is reserved for DNA recognition and trans-activation.

Authors:  K Ogata; C Kanei-Ishii; M Sasaki; H Hatanaka; A Nagadoi; M Enari; H Nakamura; Y Nishimura; S Ishii; A Sarai
Journal:  Nat Struct Biol       Date:  1996-02

7.  Truncated c-Myb expression in the human leukemia cell line TK-6.

Authors:  A Tomita; T Watanabe; H Kosugi; H Ohashi; T Uchida; T Kinoshita; S Mizutani; T Hotta; T Murate; M Seto; H Saito
Journal:  Leukemia       Date:  1998-09       Impact factor: 11.528

Review 8.  Myb binding proteins: regulators and cohorts in transformation.

Authors:  S A Ness
Journal:  Oncogene       Date:  1999-05-13       Impact factor: 9.867

Review 9.  How can oncogenic transcription factors cause cancer: a critical review of the myb story.

Authors:  M Introna; J Golay
Journal:  Leukemia       Date:  1999-09       Impact factor: 11.528

10.  Viral myb oncogene encodes a sequence-specific DNA-binding activity.

Authors:  H Biedenkapp; U Borgmeyer; A E Sippel; K H Klempnauer
Journal:  Nature       Date:  1988-10-27       Impact factor: 49.962

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  3 in total

1.  Transition state and ground state properties of the helix-coil transition in peptides deduced from high-pressure studies.

Authors:  Sabine Neumaier; Maren Büttner; Annett Bachmann; Thomas Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

2.  Volume of Hsp90 ligand binding and the unfolding phase diagram as a function of pressure and temperature.

Authors:  Vytautas Petrauskas; Joana Gylytė; Zigmantas Toleikis; Piotras Cimmperman; Daumantas Matulis
Journal:  Eur Biophys J       Date:  2013-01-05       Impact factor: 1.733

3.  Protein unfolded states populated at high and ambient pressure are similarly compact.

Authors:  Balasubramanian Harish; Richard E Gillilan; Junjie Zou; Jinqiu Wang; Daniel P Raleigh; Catherine A Royer
Journal:  Biophys J       Date:  2021-05-04       Impact factor: 3.699

  3 in total

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