Literature DB >> 21364682

Computational morphodynamics of plants: integrating development over space and time.

Adrienne H K Roeder1, Paul T Tarr, Cory Tobin, Xiaolan Zhang, Vijay Chickarmane, Alexandre Cunha, Elliot M Meyerowitz.   

Abstract

The emerging field of computational morphodynamics aims to understand the changes that occur in space and time during development by combining three technical strategies: live imaging to observe development as it happens; image processing and analysis to extract quantitative information; and computational modelling to express and test time-dependent hypotheses. The strength of the field comes from the iterative and combined use of these techniques, which has provided important insights into plant development.

Entities:  

Mesh：

Substances：

Year:  2011        PMID： 21364682      PMCID： PMC4128830          DOI： 10.1038/nrm3079

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN： 1471-0072            Impact factor:   94.444


  58 in total

1.  An auxin-driven polarized transport model for phyllotaxis.

Authors:  Henrik Jönsson; Marcus G Heisler; Bruce E Shapiro; Elliot M Meyerowitz; Eric Mjolsness
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-13       Impact factor: 11.205

2.  A plausible model of phyllotaxis.

Authors:  Richard S Smith; Soazig Guyomarc'h; Therese Mandel; Didier Reinhardt; Cris Kuhlemeier; Przemyslaw Prusinkiewicz
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

3.  Positional signaling mediated by a receptor-like kinase in Arabidopsis.

Authors:  Su-Hwan Kwak; Ronglai Shen; John Schiefelbein
Journal:  Science       Date:  2004-12-23       Impact factor: 47.728

4.  Developmental patterning by mechanical signals in Arabidopsis.

Authors:  Olivier Hamant; Marcus G Heisler; Henrik Jönsson; Pawel Krupinski; Magalie Uyttewaal; Plamen Bokov; Francis Corson; Patrik Sahlin; Arezki Boudaoud; Elliot M Meyerowitz; Yves Couder; Jan Traas
Journal:  Science       Date:  2008-12-12       Impact factor: 47.728

Review 5.  Back to the future: evolution of computational models in plant morphogenesis.

Authors:  Verônica A Grieneisen; Ben Scheres
Journal:  Curr Opin Plant Biol       Date:  2009-08-24       Impact factor: 7.834

Review 6.  Towards a functional understanding of cell growth dynamics in shoot meristem stem-cell niche.

Authors:  Mingtang Xie; Moses Tataw; G Venugopala Reddy
Journal:  Semin Cell Dev Biol       Date:  2009-09-24       Impact factor: 7.727

7.  Genetic control of organ shape and tissue polarity.

Authors:  Amelia A Green; J Richard Kennaway; Andrew I Hanna; J Andrew Bangham; Enrico Coen
Journal:  PLoS Biol       Date:  2010-11-09       Impact factor: 8.029

8.  The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root.

Authors:  M E Galway; J D Masucci; A M Lloyd; V Walbot; R W Davis; J W Schiefelbein
Journal:  Dev Biol       Date:  1994-12       Impact factor: 3.582

9.  The cellular parameters of leaf development in tobacco: a clonal analysis.

Authors:  R S Poethig; I M Sussex
Journal:  Planta       Date:  1985-08       Impact factor: 4.116

10.  A quantitative and dynamic model for plant stem cell regulation.

Authors:  Florian Geier; Jan U Lohmann; Moritz Gerstung; Annette T Maier; Jens Timmer; Christian Fleck
Journal:  PLoS One       Date:  2008-10-29       Impact factor: 3.240
View more
  19 in total

1.  Salicylic Acid biosynthesis and metabolism.

Authors:  D'Maris Amick Dempsey; A Corina Vlot; Mary C Wildermuth; Daniel F Klessig
Journal:  Arabidopsis Book       Date:  2011-12-20

2.  Mutually reinforcing patterning mechanisms.

Authors:  Elena R Alvarez-Buylla; Mariana Benítez; Carlos Espinosa-Soto
Journal:  Nat Rev Mol Cell Biol       Date:  2011-07-06       Impact factor: 94.444

3.  Accuracy in Quantitative 3D Image Analysis.

Authors:  George W Bassel
Journal:  Plant Cell       Date:  2015-03-24       Impact factor: 11.277

Review 4.  Quantitative and in toto imaging in ascidians: working toward an image-centric systems biology of chordate morphogenesis.

Authors:  Michael Veeman; Wendy Reeves
Journal:  Genesis       Date:  2014-10-06       Impact factor: 2.487

5.  Mechanical constraints imposed by 3D cellular geometry and arrangement modulate growth patterns in the Arabidopsis embryo.

Authors:  George W Bassel; Petra Stamm; Gabriella Mosca; Pierre Barbier de Reuille; Daniel J Gibbs; Robin Winter; Ales Janka; Michael J Holdsworth; Richard S Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-27       Impact factor: 11.205

6.  Variability and Constancy in Cellular Growth of Arabidopsis Sepals.

Authors:  Gerardo Tauriello; Heather M Meyer; Richard S Smith; Petros Koumoutsakos; Adrienne H K Roeder
Journal:  Plant Physiol       Date:  2015-10-02       Impact factor: 8.340

7.  PaCeQuant: A Tool for High-Throughput Quantification of Pavement Cell Shape Characteristics.

Authors:  Birgit Möller; Yvonne Poeschl; Romina Plötner; Katharina Bürstenbinder
Journal:  Plant Physiol       Date:  2017-09-20       Impact factor: 8.340

8.  Growth dynamics of the Arabidopsis fruit is mediated by cell expansion.

Authors:  Juan-José Ripoll; Mingyuan Zhu; Stephanie Brocke; Cindy T Hon; Martin F Yanofsky; Arezki Boudaoud; Adrienne H K Roeder
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-22       Impact factor: 11.205

9.  Quantifying Shape Changes and Tissue Deformation in Leaf Development.

Authors:  Anne-Gaëlle Rolland-Lagan; Lauren Remmler; Camille Girard-Bock
Journal:  Plant Physiol       Date:  2014-04-07       Impact factor: 8.340

Review 10.  Advanced imaging techniques for the study of plant growth and development.

Authors:  Rosangela Sozzani; Wolfgang Busch; Edgar P Spalding; Philip N Benfey
Journal:  Trends Plant Sci       Date:  2014-01-13       Impact factor: 18.313
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.