Literature DB >> 19709922

Back to the future: evolution of computational models in plant morphogenesis.

Verônica A Grieneisen1, Ben Scheres.   

Abstract

There has been a recent surge of studies in plant biology that combine experimental data with computational modeling. Here, we categorize a diversity of theoretical models and emphasize the need to tailor modeling approaches to the questions at hand. Models can start from biophysical or purely heuristic basic principles, and can focus at several levels of biological organization. Recent examples illustrate that this entire spectrum can be useful to understand plant development, and point to a future direction where more approaches are combined in fruitful ways--either by proving the same result with different basic principles or by exploring interactions across levels, in the so-called multilevel models.

Mesh:

Year:  2009        PMID: 19709922     DOI: 10.1016/j.pbi.2009.07.008

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  10 in total

Review 1.  Organogenesis from stem cells in planta: multiple feedback loops integrating molecular and mechanical signals.

Authors:  Fabrice Besnard; Teva Vernoux; Olivier Hamant
Journal:  Cell Mol Life Sci       Date:  2011-06-08       Impact factor: 9.261

2.  Computational morphodynamics of plants: integrating development over space and time.

Authors:  Adrienne H K Roeder; Paul T Tarr; Cory Tobin; Xiaolan Zhang; Vijay Chickarmane; Alexandre Cunha; Elliot M Meyerowitz
Journal:  Nat Rev Mol Cell Biol       Date:  2011-03-02       Impact factor: 94.444

3.  Growth-induced hormone dilution can explain the dynamics of plant root cell elongation.

Authors:  Leah R Band; Susana Úbeda-Tomás; Rosemary J Dyson; Alistair M Middleton; T Charlie Hodgman; Markus R Owen; Oliver E Jensen; Malcolm J Bennett; John R King
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-20       Impact factor: 11.205

4.  Modeling Plant Tissue Development Using VirtualLeaf.

Authors:  Claudiu-Cristi Antonovici; Guacimo Y Peerdeman; Harold B Wolff; Roeland M H Merks
Journal:  Methods Mol Biol       Date:  2022

5.  Modeling a cortical auxin maximum for nodulation: different signatures of potential strategies.

Authors:  Eva Elisabeth Deinum; René Geurts; Ton Bisseling; Bela M Mulder
Journal:  Front Plant Sci       Date:  2012-05-28       Impact factor: 5.753

6.  Non-straight cell edges are important to invasion and engulfment as demonstrated by cell mechanics model.

Authors:  Matthew C Perrone; Jim H Veldhuis; G Wayne Brodland
Journal:  Biomech Model Mechanobiol       Date:  2015-07-07

7.  Pavement cells and the topology puzzle.

Authors:  Ross Carter; Yara E Sánchez-Corrales; Matthew Hartley; Verônica A Grieneisen; Athanasius F M Marée
Journal:  Development       Date:  2017-10-30       Impact factor: 6.868

8.  Systems Biology Approach Pinpoints Minimum Requirements for Auxin Distribution during Fruit Opening.

Authors:  Xin-Ran Li; Renske M A Vroomans; Samantha Fox; Verônica A Grieneisen; Lars Østergaard; Athanasius F M Marée
Journal:  Mol Plant       Date:  2019-05-23       Impact factor: 13.164

9.  Discrete mechanical growth model for plant tissue.

Authors:  Louis D Weise; Kirsten H W J Ten Tusscher
Journal:  PLoS One       Date:  2019-08-12       Impact factor: 3.240

Review 10.  Experimental data and computational modeling link auxin gradient and development in the Arabidopsis root.

Authors:  Natalie M Clark; Maria A de Luis Balaguer; Rosangela Sozzani
Journal:  Front Plant Sci       Date:  2014-07-07       Impact factor: 5.753

  10 in total

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