Literature DB >> 21360734

Quantitative analysis of yeast internal architecture using soft X-ray tomography.

Maho Uchida1, Yidi Sun, Gerry McDermott, Christian Knoechel, Mark A Le Gros, Dilworth Parkinson, David G Drubin, Carolyn A Larabell.   

Abstract

We used soft X-ray tomography (SXT)--a high-resolution, quantitative imaging technique--to measure cell size and organelle volumes in yeasts. Cell size is a key factor in initiating cell division in yeasts, whereas the number and volume of the organelles have a profound impact on the function and viability of a cell. Consequently, determining these cell parameters is fundamentally important in understanding yeast biology. SXT is well suited to this type of analysis. Specimens are imaged in a near-native state, and relatively large numbers of cells can be readily analysed. In this study, we characterized haploid and diploid strains of Saccharomyces cerevisiae at each of the key stages in the cell cycle and determined the relationships that exist cellular and organelle volumes. We then compared these results with SXT data obtained from Schizosaccharomyces pombe, the three main phenotypes displayed by the opportunistic yeast pathogen Candida albicans and from a coff1-22 mutant strain of S. cerevisiae. This comparison revealed that volumetric ratios were invariant, irrespective of yeast strain, ploidy or morphology, leading to the conclusion these volumetric ratios are common in all yeasts.
Copyright © 2010 John Wiley & Sons, Ltd.

Entities:  

Mesh:

Year:  2010        PMID: 21360734      PMCID: PMC3404734          DOI: 10.1002/yea.1834

Source DB:  PubMed          Journal:  Yeast        ISSN: 0749-503X            Impact factor:   3.239


  31 in total

1.  Computed tomography of cryogenic biological specimens based on X-ray microscopic images.

Authors:  D Weiss; G Schneider; B Niemann; P Guttmann; D Rudolph; G Schmahl
Journal:  Ultramicroscopy       Date:  2000-08       Impact factor: 2.689

2.  Extracellular control of cell size.

Authors:  I J Conlon; G A Dunn; A W Mudge; M C Raff
Journal:  Nat Cell Biol       Date:  2001-10       Impact factor: 28.824

Review 3.  X-ray microscopy: methods and perspectives.

Authors:  Gerd Schneider
Journal:  Anal Bioanal Chem       Date:  2003-06-17       Impact factor: 4.142

4.  Compensation for nonuniform resolution using penalized-likelihood reconstruction in space-variant imaging systems.

Authors:  J Webster Stayman; Jeffrey A Fessler
Journal:  IEEE Trans Med Imaging       Date:  2004-03       Impact factor: 10.048

Review 5.  Visualizing cells at the nanoscale.

Authors:  Andrew Leis; Beate Rockel; Lars Andrees; Wolfgang Baumeister
Journal:  Trends Biochem Sci       Date:  2008-12-26       Impact factor: 13.807

6.  Lysosomes.

Authors:  Volkmar Gieselmann; Thomas Braulke
Journal:  Biochim Biophys Acta       Date:  2009-04

7.  Measurement of mass, density, and volume during the cell cycle of yeast.

Authors:  Andrea K Bryan; Alexi Goranov; Angelika Amon; Scott R Manalis
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-23       Impact factor: 11.205

8.  Soft X-ray tomography of phenotypic switching and the cellular response to antifungal peptoids in Candida albicans.

Authors:  Maho Uchida; Gerry McDermott; Modi Wetzler; Mark A Le Gros; Markko Myllys; Christian Knoechel; Annelise E Barron; Carolyn A Larabell
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-30       Impact factor: 11.205

Review 9.  Soft X-ray tomography and cryogenic light microscopy: the cool combination in cellular imaging.

Authors:  Gerry McDermott; Mark A Le Gros; Christian G Knoechel; Maho Uchida; Carolyn A Larabell
Journal:  Trends Cell Biol       Date:  2009-10-07       Impact factor: 20.808

10.  X-ray tomography generates 3-D reconstructions of the yeast, saccharomyces cerevisiae, at 60-nm resolution.

Authors:  Carolyn A Larabell; Mark A Le Gros
Journal:  Mol Biol Cell       Date:  2003-12-29       Impact factor: 4.138

View more
  59 in total

1.  A quantitative inventory of yeast P body proteins reveals principles of composition and specificity.

Authors:  Wenmin Xing; Denise Muhlrad; Roy Parker; Michael K Rosen
Journal:  Elife       Date:  2020-06-19       Impact factor: 8.140

2.  In Vivo Analysis of NH4+ Transport and Central Nitrogen Metabolism in Saccharomyces cerevisiae during Aerobic Nitrogen-Limited Growth.

Authors:  H F Cueto-Rojas; R Maleki Seifar; A Ten Pierick; W van Helmond; M M Pieterse; J J Heijnen; S A Wahl
Journal:  Appl Environ Microbiol       Date:  2016-09-16       Impact factor: 4.792

3.  Three-dimensional imaging of human stem cells using soft X-ray tomography.

Authors:  J C Niclis; S V Murphy; D Y Parkinson; A Zedan; A H Sathananthan; D S Cram; P Heraud
Journal:  J R Soc Interface       Date:  2015-07-06       Impact factor: 4.118

4.  Quantitatively imaging chromosomes by correlated cryo-fluorescence and soft x-ray tomographies.

Authors:  Elizabeth A Smith; Gerry McDermott; Myan Do; Karen Leung; Barbara Panning; Mark A Le Gros; Carolyn A Larabell
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

Review 5.  Organelles - understanding noise and heterogeneity in cell biology at an intermediate scale.

Authors:  Amy Y Chang; Wallace F Marshall
Journal:  J Cell Sci       Date:  2017-02-09       Impact factor: 5.285

6.  Quantitative measurement of protein relocalization in live cells.

Authors:  Alan Bush; Alejandro Colman-Lerner
Journal:  Biophys J       Date:  2013-02-05       Impact factor: 4.033

7.  Organelle size scaling of the budding yeast vacuole is tuned by membrane trafficking rates.

Authors:  Yee-Hung Mark Chan; Wallace F Marshall
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

8.  Major evolutionary transitions of life, metabolic scaling and the number and size of mitochondria and chloroplasts.

Authors:  Jordan G Okie; Val H Smith; Mercedes Martin-Cereceda
Journal:  Proc Biol Sci       Date:  2016-05-25       Impact factor: 5.349

Review 9.  Mesoscale imaging with cryo-light and X-rays: Larger than molecular machines, smaller than a cell.

Authors:  Axel A Ekman; Jian-Hua Chen; Jessica Guo; Gerry McDermott; Mark A Le Gros; Carolyn A Larabell
Journal:  Biol Cell       Date:  2016-11-14       Impact factor: 4.458

10.  PSF correction in soft X-ray tomography.

Authors:  Axel Ekman; Venera Weinhardt; Jian-Hua Chen; Gerry McDermott; Mark A Le Gros; Carolyn Larabell
Journal:  J Struct Biol       Date:  2018-06-13       Impact factor: 2.867

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.