| Literature DB >> 21358750 |
O Levran1, E Peles, S Hamon, M Randesi, C Zhao, B Zhang, M Adelson, M J Kreek.
Abstract
Opioid addiction is a chronic disease with high genetic contribution and a large inter-individual variability in therapeutic response. The goal of this study was to identify pharmacodynamic factors that modulate methadone dose requirement. The neurotrophin family is involved in neural plasticity, learning, memory and behavior and deregulated neural plasticity may underlie the pathophysiology of drug addiction. Brain-derived neurotrophic factor (BDNF) was shown to affect the response to methadone maintenance treatment. This study explores the effects of polymorphisms in the nerve growth factor (β polypeptide) gene, NGFB, on the methadone doses required for successful maintenance treatment for heroin addiction. Genotypes of 14 NGFB polymorphisms were analyzed for association with the stabilizing methadone dose in 72 former severe heroin addicts with no major co-medications. There was significant difference in methadone doses required by subjects with different genotypes of the NGFB intronic single-nucleotide polymorphism rs2239622 (P=0.0002). These results may have clinical importance.Entities:
Mesh:
Substances:
Year: 2011 PMID: 21358750 PMCID: PMC3130093 DOI: 10.1038/tpj.2011.6
Source DB: PubMed Journal: Pharmacogenomics J ISSN: 1470-269X Impact factor: 3.550
NGFB SNPs details
| # | SNP ID | Alleles | Position | Location | Protein |
|---|---|---|---|---|---|
| 1 | rs3811014 | A/G | 115882503 | 5' near gene | |
| 2 | rs4332358 | G/A | 115875645 | 5' near gene | |
| 3 | rs6537860 | C/T | 115856344 | Intron 1 | |
| 4 | rs4529705 | C/T | 115851491 | Intron 1 | |
| 5 | rs6678788 | G/A | 115839671 | Intron 1 | |
| 6 | rs2856813 | G/A | 115837919 | Intron 1 | |
| 7 | rs2239622 | C/T | 115837709 | Intron 1 | |
| 8 | rs910330 | C/A | 115835500 | Intron 2 | |
| 10 | rs6326 | C/G | 115830461 | Intron 2 | |
| 11 | rs6328 | G/T | 115829943 | Intron 2 | |
| 12 | rs6330 | C/T | 115829313 | exon 3 | A35V |
| 13 | rs11466110 | G/A | 115829203 | exon 3 | V72M |
| 14 | rs11466112 | C/T | 115828756 | exon 3 | R221W |
Sample details
| # | Methadone | Trough | Ethnicity | European | Middle | |
|---|---|---|---|---|---|---|
| 1 | 12.5 | 100 | non Ashkenazi Jewish | Moroccan | 0.44 | 0.48 |
| 2 | 25 | 450 | non Ashkenazi Jewish | Moroccan | 0.04 | 0.94 |
| 3 | 50 | 230 | non Ashkenazi Jewish | Moroccan | 0.93 | 0.03 |
| 4 | 55 | 250 | Ashkenazi Jewish | 0.95 | 0.02 | |
| 5 | 55 | 280 | non Ashkenazi Jewish | Moroccan | 0.97 | 0.01 |
| 6 | 55 | 750 | non Ashkenazi Jewish | Syrian, Turkish | 0.06 | 0.85 |
| 7 | 60 | 180 | non Ashkenazi Jewish | Greek | 0.72 | 0.19 |
| 8 | 60 | 140 | non Ashkenazi Jewish | Moroccan, Spain | 0.03 | 0.92 |
| 9 | 70 | 280 | Ashkenazi Jewish | 0.90 | 0.08 | |
| 10 | 75 | 310 | Caucasian (non Jewish) | 0.02 | 0.82 | |
| 11 | 78 | 220 | non Ashkenazi Jewish | Yemenite | 0.02 | 0.89 |
| 12 | 90 | 260 | Ashkenazi Jewish | 0.86 | 0.04 | |
| 13 | 90 | 650 | Ashkenazi Jewish | 0.91 | 0.05 | |
| 14 | 95 | 260 | non Ashkenazi Jewish | 0.14 | 0.83 | |
| 15 | 95 | 210 | non Ashkenazi Jewish | Turkish | 0.48 | 0.40 |
| 16 | 100 | 840 | non Ashkenazi Jewish | Turkish | 0.06 | 0.86 |
| 17 | 110 | 820 | non Ashkenazi Jewish | Iraqi | 0.01 | 0.89 |
| 18 | 110 | 300 | Caucasian (non Jewish) | 0.89 | 0.08 | |
| 19 | 115 | 890 | non Ashkenazi Jewish | Moroccan | 0.03 | 0.91 |
| 20 | 115 | 270 | Jewish | mix | 0.87 | 0.02 |
| 21 | 115 | 660 | Ashkenazi Jewish | 0.76 | 0.02 | |
| 22 | 120 | 500 | non Ashkenazi Jewish | 0.95 | 0.01 | |
| 23 | 120 | 330 | Arab | 0.01 | 0.96 | |
| 24 | 120 | 230 | Caucasian (non Jewish) | 0.93 | 0.04 | |
| 25 | 120 | 900 | non Ashkenazi Jewish | Moroccan | 0.07 | 0.92 |
| 26 | 125 | 230 | Arab | 0.04 | 0.81 | |
| 27 | 125 | 200 | non Ashkenazi Jewish | Yemenite | 0.19 | 0.77 |
| 28 | 130 | 580 | non Ashkenazi Jewish | Iranian | 0.76 | 0.19 |
| 29 | 130 | 390 | non Ashkenazi Jewish | 0.01 | 0.03 | |
| 30 | 130 | 340 | non Ashkenazi Jewish | 0.08 | 0.77 | |
| 31 | 130 | 290 | Caucasian (non Jewish) | 0.93 | 0.03 | |
| 32 | 135 | 330 | Ashkenazi Jewish | 0.92 | 0.05 | |
| 33 | 135 | 340 | non Ashkenazi Jewish | Yemenite | 0.73 | 0.26 |
| 34 | 135 | 100 | non Ashkenazi Jewish | Moroccan | 0.02 | 0.07 |
| 35 | 135 | 940 | non Ashkenazi Jewish | Libyan | 0.39 | 0.41 |
| 36 | 140 | 1220 | Ashkenazi Jewish | 0.37 | 0.56 | |
| 37 | 140 | 630 | non Ashkenazi Jewish | Iraqi | 0.97 | 0.02 |
| 38 | 140 | 630 | non Ashkenazi Jewish | Moroccan | 0.03 | 0.89 |
| 39 | 140 | 450 | Ashkenazi Jewish | 0.98 | 0.01 | |
| 40 | 140 | 230 | Jewish | mix | 0.28 | 0.17 |
| 41 | 140 | 600 | Ashkenazi Jewish | 0.96 | 0.02 | |
| 42 | 140 | 850 | Ashkenazi Jewish | 0.80 | 0.14 | |
| 43 | 145 | 780 | Jewish | mix | 0.93 | 0.04 |
| 44 | 150 | 250 | non Ashkenazi Jewish | Turkish, Iraqi | 0.01 | 0.96 |
| 45 | 150 | 450 | Arab | 0.58 | 0.33 | |
| 46 | 150 | 340 | Arab | 0.01 | 0.85 | |
| 47 | 160 | 110 | non Ashkenazi Jewish | Moroccan | 0.57 | 0.30 |
| 48 | 160 | 1000 | non Ashkenazi Jewish | Yemenite | 0.34 | 0.54 |
| 49 | 165 | 540 | non Ashkenazi Jewish | 0.08 | 0.66 | |
| 50 | 165 | 640 | Ashkenazi Jewish | 0.03 | 0.90 | |
| 51 | 170 | 400 | Caucasian (non Jewish) | 0.39 | 0.44 | |
| 52 | 170 | 500 | Ashkenazi Jewish | 0.91 | 0.02 | |
| 53 | 175 | 290 | non Ashkenazi Jewish | Turkish | 0.66 | 0.27 |
| 54 | 180 | 430 | Caucasian (non Jewish) | 0.22 | 0.68 | |
| 55 | 183 | 600 | Ashkenazi Jewish | 0.54 | 0.10 | |
| 56 | 185 | 490 | Jewish | unknown | 0.01 | 0.87 |
| 57 | 187.5 | 440 | Ashkenazi Jewish | 0.50 | 0.45 | |
| 58 | 190 | 820 | non Ashkenazi Jewish | Iraqi | 0.95 | 0.01 |
| 59 | 190 | 350 | non Ashkenazi Jewish | Syrian | 0.02 | 0.92 |
| 60 | 190 | 1210 | non Ashkenazi Jewish | 0.96 | 0.01 | |
| 61 | 190 | 380 | non Ashkenazi Jewish | 0.88 | 0.09 | |
| 62 | 190 | 940 | Ashkenazi Jewish | 0.37 | 0.56 | |
| 63 | 190 | 520 | non Ashkenazi Jewish | Yemenite | 0.09 | 0.85 |
| 64 | 195 | 490 | non Ashkenazi Jewish | Moroccan | 0.96 | 0.02 |
| 65 | 200 | 750 | non Ashkenazi Jewish | Yemenite | 0.05 | 0.93 |
| 66 | 205 | 390 | Ashkenazi Jewish | 0.43 | 0.29 | |
| 67 | 220 | 600 | Ashkenazi Jewish | 0.94 | 0.01 | |
| 68 | 220 | 700 | Ashkenazi Jewish | 0.96 | 0.03 | |
| 69 | 225 | 670 | non Ashkenazi Jewish | Moroccan | 0.95 | 0.01 |
| 70 | 230 | 580 | non Ashkenazi Jewish | 0.12 | 0.78 | |
| 71 | 240 | 680 | non Ashkenazi Jewish | Iraqi | 0.11 | 0.80 |
| 72 | 260 | 1070 | Jewish | mix | 0.67 | 0.25 |
The list is sorted by ascending methadone dose.
The proportion of ancestral contribution was calculated with AIMs data (see methods).
Only the two major contributors (European and Middle East), out of 7 calculated, are shown.
Allele frequencies of the NGFB SNPs in different populations
| Israeli | European Americans | HapMap | |||||
|---|---|---|---|---|---|---|---|
| Cases | Controls | CEU | YRI | CHB | |||
| # | SNP ID | n =72 | n=350 | n=184 | |||
| 1 | rs3811014 | 0.16 | 0.18 | 0.21 | 0.16 | 0.16 | |
| 2 | rs4332358 | 0.45 | 0.28 | 0.36 | 0.23 | ||
| 3 | rs6537860 | 0.41 | 0.31 | 0.34 | 0.30 | ||
| 4 | rs4529705 | 0.42 | 0.31 | 0.34 | 0.40 | ||
| 5 | rs6678788 | 0.39 | 0.30 | 0.31 | 0.29 | ||
| 6 | rs2856813 | 0.42 | 0.46 | 0.48 | 0.48 | ||
| 7 | 0.38 | 0.29 | 0.30 | 0.28 | 0.19 | ||
| 8 | rs910330 | 0.39 | 0.30 | 0.31 | 0.29 | 0.25 | |
| 9 | rs2268793 | 0.12 | 0.07 | 0.10 | 0.07 | 0.02 | |
| 10 | rs6326 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | |
| 11 | rs6328 | 0.42 | 0.37 | 0.36 | 0.34 | 0.29 | |
| 12 | rs6330 | 0.37 | 0.43 | 0.40 | 0.44 | ||
| 13 | rs11466110 | 0.00 | 0.00 | 0.00 | 0.01 | 0.04 | 0.00 |
| 14 | rs11466112 | 0.00 | 0.00 | 0.00 | 0.00 | 0.003 | 0.00 |
Numbers in bold are significantly different than those of HapMap Caucasians.
This study.
Sample does not include the Israeli subjects.
Caucasians.
Africans from Yoruba.
Han Chinese.
The minor allele in CEU is the major allele in YRI or CHB.
Other NCBI Caucasian population (no data in HapMap).
African-specific.
Association of individual SNPs with daily methadone dose
| Genotype | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| A/A | A/B | B/B | |||||||||
| SNP ID | n | Mean | SE | n | Mean | SE | n | Mean | SE | ||
| 1 | rs3811014 | 49 | 138.3 | 8.3 | 23 | 141.5 | 7.6 | 0 | - | - | 0.8087 |
| 2 | rs4332358 | 19 | 115.5 | 12.3 | 40 | 151.3 | 7.2 | 12 | 128.8 | 15.6 | 0.0311 |
| 3 | rs6537860 | 23 | 127.7 | 11.3 | 39 | 151.9 | 7.6 | 10 | 117.0 | 18.0 | 0.0702 |
| 4 | rs4529705 | 22 | 127.1 | 11.9 | 40 | 151.6 | 7.4 | 10 | 117.0 | 18.0 | 0.0699 |
| 5 | rs6678788 | 24 | 138.5 | 10.7 | 40 | 147.1 | 7.6 | 8 | 103.1 | 22.1 | 0.0920 |
| 6 | rs2856813 | 22 | 123.0 | 11.6 | 39 | 154.3 | 6.7 | 11 | 118.9 | 20.4 | 0.0268 |
| 8 | rs910330 | 25 | 139.3 | 10.3 | 38 | 145.6 | 7.9 | 9 | 112.8 | 21.7 | 0.2392 |
| 9 | rs2268793 | 57 | 137.4 | 6.9 | 13 | 149.6 | 16.2 | 2 | 127.5 | 7.5 | 0.7152 |
| 10 | rs6326 | 70 | 2 | 0 | NA | ||||||
| 11 | rs6328 | 25 | 134.9 | 12.0 | 34 | 153.4 | 6.4 | 13 | 111.0 | 16.7 | 0.0367 |
| 12 | rs6330 | 29 | 134.8 | 9.3 | 33 | 144.1 | 8.5 | 10 | 136.8 | 22.3 | 0.7750 |
| 13 | rs11466110 | 0 | 0 | 0 | NA | ||||||
| 14 | rs11466112 | 0 | 0 | 0 | NA | ||||||
A represents the more common allele and B represents the less common variant
Genotype test with co-dominant mode.
P =0.0002 for genotype test with recessive mode.
Abbreviations: n, number of subjects; SE, standard error; NA, not applicable.
Figure 1Association of NGFB SNP rs2239622 with daily methadone doses required for successful treatment. The results are shown as box plots where the box represents the middle 50% of the data and the whiskers represent the spread of the remaining data. The median is represented by the line in the center. Stable methadone doses are plotted against the genotypes.