Literature DB >> 21358636

Enzyme mechanism as a kinetic control element for designing synthetic biofuel pathways.

Brooks B Bond-Watts1, Robert J Bellerose, Michelle C Y Chang.   

Abstract

Living systems have evolved remarkable molecular functions that can be redesigned for in vivo chemical synthesis as we gain a deeper understanding of the underlying biochemical principles for de novo construction of synthetic pathways. We have focused on developing pathways for next-generation biofuels as they require carbon to be channeled to product at quantitative yields. However, these fatty acid-inspired pathways must manage the highly reversible nature of the enzyme components. For targets in the biodiesel range, the equilibrium can be driven to completion by physical sequestration of an insoluble product, which is a mechanism unavailable to soluble gasoline-sized products. In this work, we report the construction of a chimeric pathway assembled from three different organisms for the high-level production of n-butanol (4,650 ± 720 mg l⁻¹) that uses an enzymatic chemical reaction mechanism in place of a physical step as a kinetic control element to achieve high yields from glucose (28%).

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Year:  2011        PMID: 21358636     DOI: 10.1038/nchembio.537

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  45 in total

1.  Trophic conversion of an obligate photoautotrophic organism through metabolic engineering.

Authors:  L A Zaslavskaia; J C Lippmeier; C Shih; D Ehrhardt; A R Grossman; K E Apt
Journal:  Science       Date:  2001-06-15       Impact factor: 47.728

2.  Studies on the fatty acid oxidizing system of animal tissues. VI. beta-Hydroxyacyl coenzyme A dehydrogenase.

Authors:  S J WAKIL; D E GREEN; S MII; H R MAHLER
Journal:  J Biol Chem       Date:  1954-04       Impact factor: 5.157

Review 3.  The structural biology of type II fatty acid biosynthesis.

Authors:  Stephen W White; Jie Zheng; Yong-Mei Zhang
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

4.  A novel prokaryotic trans-2-enoyl-CoA reductase from the spirochete Treponema denticola.

Authors:  Sara Tucci; William Martin
Journal:  FEBS Lett       Date:  2007-03-15       Impact factor: 4.124

5.  Cloning, sequencing, and expression of clustered genes encoding beta-hydroxybutyryl-coenzyme A (CoA) dehydrogenase, crotonase, and butyryl-CoA dehydrogenase from Clostridium acetobutylicum ATCC 824.

Authors:  Z L Boynton; G N Bennet; F B Rudolph
Journal:  J Bacteriol       Date:  1996-06       Impact factor: 3.490

Review 6.  Synthetic biology for synthetic chemistry.

Authors:  Jay D Keasling
Journal:  ACS Chem Biol       Date:  2008-01-18       Impact factor: 5.100

7.  Expression of abrB310 and SinR, and effects of decreased abrB310 expression on the transition from acidogenesis to solventogenesis, in Clostridium acetobutylicum ATCC 824.

Authors:  Miles C Scotcher; Frederick B Rudolph; George N Bennett
Journal:  Appl Environ Microbiol       Date:  2005-04       Impact factor: 4.792

8.  Regulation of the sol locus genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 by a putative transcriptional repressor.

Authors:  R V Nair; E M Green; D E Watson; G N Bennett; E T Papoutsakis
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

Review 9.  beta-oxidation of fatty acids in mitochondria, peroxisomes, and bacteria: a century of continued progress.

Authors:  W H Kunau; V Dommes; H Schulz
Journal:  Prog Lipid Res       Date:  1995       Impact factor: 16.195

Review 10.  Fermentative butanol production by Clostridia.

Authors:  Sang Yup Lee; Jin Hwan Park; Seh Hee Jang; Lars K Nielsen; Jaehyun Kim; Kwang S Jung
Journal:  Biotechnol Bioeng       Date:  2008-10-01       Impact factor: 4.530

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  84 in total

Review 1.  Computational tools for the synthetic design of biochemical pathways.

Authors:  Marnix H Medema; Renske van Raaphorst; Eriko Takano; Rainer Breitling
Journal:  Nat Rev Microbiol       Date:  2012-01-23       Impact factor: 60.633

2.  ATP drives direct photosynthetic production of 1-butanol in cyanobacteria.

Authors:  Ethan I Lan; James C Liao
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

3.  Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals.

Authors:  Clementina Dellomonaco; James M Clomburg; Elliot N Miller; Ramon Gonzalez
Journal:  Nature       Date:  2011-08-10       Impact factor: 49.962

4.  Establishing synthesis pathway-host compatibility via enzyme solubility.

Authors:  Sara A Amin; Venkatesh Endalur Gopinarayanan; Nikhil U Nair; Soha Hassoun
Journal:  Biotechnol Bioeng       Date:  2019-03-29       Impact factor: 4.530

5.  Proteomic phenotyping of Novosphingobium nitrogenifigens reveals a robust capacity for simultaneous nitrogen fixation, polyhydroxyalkanoate production, and resistance to reactive oxygen species.

Authors:  Anne-Marie Smit; Timothy J Strabala; Lifeng Peng; Pisana Rawson; Gareth Lloyd-Jones; T William Jordan
Journal:  Appl Environ Microbiol       Date:  2012-05-11       Impact factor: 4.792

Review 6.  Rethinking glycolysis: on the biochemical logic of metabolic pathways.

Authors:  Arren Bar-Even; Avi Flamholz; Elad Noor; Ron Milo
Journal:  Nat Chem Biol       Date:  2012-05-17       Impact factor: 15.040

7.  Microbial engineering for the production of advanced biofuels.

Authors:  Pamela P Peralta-Yahya; Fuzhong Zhang; Stephen B del Cardayre; Jay D Keasling
Journal:  Nature       Date:  2012-08-16       Impact factor: 49.962

8.  Matching Protein Interfaces for Improved Medium-Chain Fatty Acid Production.

Authors:  Stephen Sarria; Thomas G Bartholow; Adam Verga; Michael D Burkart; Pamela Peralta-Yahya
Journal:  ACS Synth Biol       Date:  2018-05-03       Impact factor: 5.110

Review 9.  Microbial production of advanced biofuels.

Authors:  Jay Keasling; Hector Garcia Martin; Taek Soon Lee; Aindrila Mukhopadhyay; Steven W Singer; Eric Sundstrom
Journal:  Nat Rev Microbiol       Date:  2021-06-25       Impact factor: 60.633

10.  Spectroscopic elucidation of energy transfer in hybrid inorganic-biological organisms for solar-to-chemical production.

Authors:  Nikolay Kornienko; Kelsey K Sakimoto; David M Herlihy; Son C Nguyen; A Paul Alivisatos; Charles B Harris; Adam Schwartzberg; Peidong Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-03       Impact factor: 11.205

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