Literature DB >> 21353670

From molecules to management: adopting DNA-based methods for monitoring biological invasions in aquatic environments.

John A Darling1, Andrew R Mahon.   

Abstract

Recent technological advances have driven rapid development of DNA-based methods designed to facilitate detection and monitoring of invasive species in aquatic environments. These tools promise to improve on traditional monitoring approaches by enhancing detection sensitivity, reducing analytical turnaround times and monitoring costs, and increasing specificity of target identifications. However, despite the promise of DNA-based monitoring methods, the adoption of these tools in decision-making frameworks remains challenging. Here, rather than explore technical aspects of method development, we examine impediments to effective translation of those methods into management contexts. In addition to surveying current use of DNA-based tools for aquatic invasive species monitoring, we explore potential sources of uncertainty associated with molecular technologies and possibilities for limiting that uncertainty and effectively communicating its implications for decision-making. We pay particular attention to the recent adoption of DNA-based methods for detection of invasive Asian carp species in the United States Great Lakes region, as this example illustrates many of the challenges associated with applying molecular tools to achieve desired management outcomes. Our goal is to provide a useful assessment of the obstacles associated with integrating DNA-based methods into aquatic invasive species management, and to offer recommendations for future efforts aimed at overcoming those obstacles. Published by Elsevier Inc.

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Year:  2011        PMID: 21353670     DOI: 10.1016/j.envres.2011.02.001

Source DB:  PubMed          Journal:  Environ Res        ISSN: 0013-9351            Impact factor:   6.498


  55 in total

Review 1.  Early detection monitoring for aquatic non-indigenous species: Optimizing surveillance, incorporating advanced technologies, and identifying research needs.

Authors:  Anett S Trebitz; Joel C Hoffman; John A Darling; Erik M Pilgrim; John R Kelly; Emily A Brown; W Lindsay Chadderton; Scott P Egan; Erin K Grey; Syed A Hashsham; Katy E Klymus; Andrew R Mahon; Jeffrey L Ram; Martin T Schultz; Carol A Stepien; James C Schardt
Journal:  J Environ Manage       Date:  2017-07-22       Impact factor: 6.789

2.  Diversity and Ecology of Chlorophyta (Viridiplantae) Assemblages in Protected and Non-protected Sites in Deception Island (Antarctica, South Shetland Islands) Assessed Using an NGS Approach.

Authors:  Paulo Eduardo Aguiar Saraiva Câmara; Micheline Carvalho-Silva; Otávio H B Pinto; Eduardo T Amorim; Diego Knop Henriques; Thamar Holanda da Silva; Franciane Pellizzari; Peter Convey; Luiz Henrique Rosa
Journal:  Microb Ecol       Date:  2020-08-28       Impact factor: 4.552

3.  Development of a real-time polymerase chain reaction assay for the detection of the invasive Mediterranean fanworm, Sabella spallanzanii, in environmental samples.

Authors:  Susanna A Wood; Anastasija Zaiko; Ingrid Richter; Graeme J Inglis; Xavier Pochon
Journal:  Environ Sci Pollut Res Int       Date:  2017-06-06       Impact factor: 4.223

4.  Green algae (Viridiplantae) in sediments from three lakes on Vega Island, Antarctica, assessed using DNA metabarcoding.

Authors:  Bárbara Medeiros Fonseca; Paulo Eduardo Aguiar Saraiva Câmara; Mayara Baptistucci Ogaki; Otávio Henrique Bezerra Pinto; Juan Manuel Lirio; Silvia H Coria; Rosemary Vieira; Micheline Carvalho-Silva; Eduardo Toledo Amorim; Peter Convey; Luiz Henrique Rosa
Journal:  Mol Biol Rep       Date:  2021-10-22       Impact factor: 2.316

5.  Environmental DNA analysis confirms extant populations of the cryptic Irwin's turtle within its historical range.

Authors:  Cecilia Villacorta-Rath; Thomas Espinoza; Bernie Cockayne; Jason Schaffer; Damien Burrows
Journal:  BMC Ecol Evol       Date:  2022-05-02

6.  Faster monitoring of the invasive alien species (IAS) Dreissena polymorpha in river basins through isothermal amplification.

Authors:  Joana Carvalho; Alejandro Garrido-Maestu; Sarah Azinheiro; Pablo Fuciños; Jorge Barros-Velázquez; Ramón J De Miguel; Verónica Gros; Marta Prado
Journal:  Sci Rep       Date:  2021-05-13       Impact factor: 4.379

7.  Conservation in a cup of water: estimating biodiversity and population abundance from environmental DNA.

Authors:  David M Lodge; Cameron R Turner; Christopher L Jerde; Matthew A Barnes; Lindsay Chadderton; Scott P Egan; Jeffrey L Feder; Andrew R Mahon; Michael E Pfrender
Journal:  Mol Ecol       Date:  2012-06       Impact factor: 6.185

8.  DNA-based species detection capabilities using laser transmission spectroscopy.

Authors:  A R Mahon; M A Barnes; F Li; S P Egan; C E Tanner; S T Ruggiero; J L Feder; D M Lodge
Journal:  J R Soc Interface       Date:  2012-11-08       Impact factor: 4.118

9.  Robust detection of rare species using environmental DNA: the importance of primer specificity.

Authors:  Taylor M Wilcox; Kevin S McKelvey; Michael K Young; Stephen F Jane; Winsor H Lowe; Andrew R Whiteley; Michael K Schwartz
Journal:  PLoS One       Date:  2013-03-26       Impact factor: 3.240

10.  Validation of eDNA surveillance sensitivity for detection of Asian carps in controlled and field experiments.

Authors:  Andrew R Mahon; Christopher L Jerde; Matthew Galaska; Jennifer L Bergner; W Lindsay Chadderton; David M Lodge; Margaret E Hunter; Leo G Nico
Journal:  PLoS One       Date:  2013-03-05       Impact factor: 3.240

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