Literature DB >> 32860076

Diversity and Ecology of Chlorophyta (Viridiplantae) Assemblages in Protected and Non-protected Sites in Deception Island (Antarctica, South Shetland Islands) Assessed Using an NGS Approach.

Paulo Eduardo Aguiar Saraiva Câmara1, Micheline Carvalho-Silva2, Otávio H B Pinto3, Eduardo T Amorim2,4, Diego Knop Henriques2, Thamar Holanda da Silva5, Franciane Pellizzari6, Peter Convey7, Luiz Henrique Rosa5.   

Abstract

Assessment of the diversity of algal assemblages in Antarctica has until now largely relied on traditional microbiological culture approaches. Here we used DNA metabarcoding through high-throughput sequencing (HTS) to assess the uncultured algal diversity at two sites on Deception Island, Antarctica. The first was a relatively undisturbed site within an Antarctic Specially Protected Area (ASPA 140), and the second was a site heavily impacted by human visitation, the Whalers Bay historic site. We detected 65 distinct algal taxa, 50 from within ASPA 140 and 61 from Whalers Bay. Of these taxa, 46 were common to both sites, and 19 only occurred at one site. Algal richness was about six times greater than reported in previous studies using culture methods. A high proportion of DNA reads obtained was assigned to the highly invasive species Caulerpa webbiana at Whalers Bay, and the potentially pathogenic genus Desmodesmus was found at both sites. Our data demonstrate that important differences exist between these two protected and human-impacted sites on Deception Island in terms of algal diversity, richness, and abundance. The South Shetland Islands have experienced considerable effects of climate change in recent decades, while warming through geothermal activity on Deception Island itself makes this island one of the most vulnerable to colonization by non-native species. The detection of DNA of non-native taxa highlights concerns about how human impacts, which take place primarily through tourism and national research operations, may influence future biological colonization processes in Antarctica.

Entities:  

Keywords:  Antarctica; Green algae; High-throughput sequencing; South Shetland Islands

Mesh:

Year:  2020        PMID: 32860076     DOI: 10.1007/s00248-020-01584-9

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  16 in total

1.  Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms.

Authors:  M R Rondon; P R August; A D Bettermann; S F Brady; T H Grossman; M R Liles; K A Loiacono; B A Lynch; I A MacNeil; C Minor; C L Tiong; M Gilman; M S Osburne; J Clardy; J Handelsman; R M Goodman
Journal:  Appl Environ Microbiol       Date:  2000-06       Impact factor: 4.792

2.  ITS2 Database V: Twice as Much.

Authors:  Markus J Ankenbrand; Alexander Keller; Matthias Wolf; Jörg Schultz; Frank Förster
Journal:  Mol Biol Evol       Date:  2015-08-06       Impact factor: 16.240

3.  Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms.

Authors:  Ralph Medinger; Viola Nolte; Ram Vinay Pandey; Steffen Jost; Birgit Ottenwälder; Christian Schlötterer; Jens Boenigk
Journal:  Mol Ecol       Date:  2010-03       Impact factor: 6.185

4.  Airborne microbial transport limitation to isolated Antarctic soil habitats.

Authors:  Stephen D J Archer; Kevin C Lee; Tancredi Caruso; Teruya Maki; Charles K Lee; S Craig Cary; Don A Cowan; Fernando T Maestre; Stephen B Pointing
Journal:  Nat Microbiol       Date:  2019-03-04       Impact factor: 17.745

5.  Global Collembola on Deception Island.

Authors:  Penelope Greenslade; Mikhail Potapov; David Russell; Peter Convey
Journal:  J Insect Sci       Date:  2012       Impact factor: 1.857

6.  MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data.

Authors:  Daniel H Huson; Sina Beier; Isabell Flade; Anna Górska; Mohamed El-Hadidi; Suparna Mitra; Hans-Joachim Ruscheweyh; Rewati Tappu
Journal:  PLoS Comput Biol       Date:  2016-06-21       Impact factor: 4.475

7.  A thin ice layer segregates two distinct fungal communities in Antarctic brines from Tarn Flat (Northern Victoria Land).

Authors:  Luigimaria Borruso; Ciro Sannino; Laura Selbmann; Dario Battistel; Laura Zucconi; Maurizio Azzaro; Benedetta Turchetti; Pietro Buzzini; Mauro Guglielmin
Journal:  Sci Rep       Date:  2018-04-26       Impact factor: 4.379

8.  Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species.

Authors:  Shilin Chen; Hui Yao; Jianping Han; Chang Liu; Jingyuan Song; Linchun Shi; Yingjie Zhu; Xinye Ma; Ting Gao; Xiaohui Pang; Kun Luo; Ying Li; Xiwen Li; Xiaocheng Jia; Yulin Lin; Christine Leon
Journal:  PLoS One       Date:  2010-01-07       Impact factor: 3.240

9.  Surprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic Units.

Authors:  Alexander F Koeppel; Martin Wu
Journal:  Nucleic Acids Res       Date:  2013-04-09       Impact factor: 16.971

10.  A comparison of methods for clustering 16S rRNA sequences into OTUs.

Authors:  Wei Chen; Clarence K Zhang; Yongmei Cheng; Shaowu Zhang; Hongyu Zhao
Journal:  PLoS One       Date:  2013-08-13       Impact factor: 3.240

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  2 in total

1.  DNA Metabarcoding Reveals Cryptic Diversity in Forest Soils on the Isolated Brazilian Trindade Island, South Atlantic.

Authors:  Paulo E A S Câmara; Fábio Leal Viana Bones; Fabyano Alvares Cardoso Lopes; Fabio S Oliveira; Cristine Chaves Barreto; Diego Knop Henriques; Larissa Paraguassu Campos; Micheline Carvalho-Silva; Peter Convey; Luiz Henrique Rosa
Journal:  Microb Ecol       Date:  2022-04-28       Impact factor: 4.552

2.  Green algae (Viridiplantae) in sediments from three lakes on Vega Island, Antarctica, assessed using DNA metabarcoding.

Authors:  Bárbara Medeiros Fonseca; Paulo Eduardo Aguiar Saraiva Câmara; Mayara Baptistucci Ogaki; Otávio Henrique Bezerra Pinto; Juan Manuel Lirio; Silvia H Coria; Rosemary Vieira; Micheline Carvalho-Silva; Eduardo Toledo Amorim; Peter Convey; Luiz Henrique Rosa
Journal:  Mol Biol Rep       Date:  2021-10-22       Impact factor: 2.316

  2 in total

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