Literature DB >> 28589279

Development of a real-time polymerase chain reaction assay for the detection of the invasive Mediterranean fanworm, Sabella spallanzanii, in environmental samples.

Susanna A Wood1,2, Anastasija Zaiko3,4, Ingrid Richter3, Graeme J Inglis5, Xavier Pochon3,6.   

Abstract

The Mediterranean fanworm, Sabella spallanzanii Gmelin 1791, was first detected in the Southern Hemisphere in the 1990s and is now abundant in many parts of southern Australia and in several locations around northern New Zealand. Once established, it can proliferate rapidly, reaching high densities with potential ecological and economic impacts. Early detection of new S. spallanzanii incursions is important to prevent its spread, guide eradication or control efforts and to increase knowledge on the species' dispersal pathways. In this study, we developed a TaqMan probe real-time polymerase chain reaction assay targeting a region of the mitochondrial cytochrome oxidase I gene. The assay was validated in silico and in vitro using DNA from New Zealand and Australian Sabellidae with no cross-reactivity detected. The assay has a linear range of detection over seven orders of magnitude with a limit of detection reached at 12.4 × 10-4 ng/μL of DNA. We analysed 145 environmental (water, sediment and biofouling) samples and obtained positive detections only from spiked samples and those collected at a port where S. spallanzanii is known to be established. This assay has the potential to enhance current morphological and molecular-based methods, through its ability to rapidly and accurately identify S. spallanzanii in environmental samples.

Entities:  

Keywords:  Cytochrome c oxidase I gene; Early detection; Environmental DNA; Monitoring; Non-indigenous species; Species-specific marker; Surveillance

Mesh:

Year:  2017        PMID: 28589279     DOI: 10.1007/s11356-017-9357-y

Source DB:  PubMed          Journal:  Environ Sci Pollut Res Int        ISSN: 0944-1344            Impact factor:   4.223


  13 in total

1.  Comparison of Enterococcus measurements in freshwater at two recreational beaches by quantitative polymerase chain reaction and membrane filter culture analysis.

Authors:  Richard A Haugland; Shawn C Siefring; Larry J Wymer; Kristen P Brenner; Alfred P Dufour
Journal:  Water Res       Date:  2004-12-24       Impact factor: 11.236

2.  Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys.

Authors:  J Geller; C Meyer; M Parker; H Hawk
Journal:  Mol Ecol Resour       Date:  2013-07-13       Impact factor: 7.090

3.  From molecules to management: adopting DNA-based methods for monitoring biological invasions in aquatic environments.

Authors:  John A Darling; Andrew R Mahon
Journal:  Environ Res       Date:  2011-02-25       Impact factor: 6.498

4.  Recommendations on methods for the detection and control of biological pollution in marine coastal waters.

Authors:  Sergej Olenin; Michael Elliott; Ingrid Bysveen; Phil F Culverhouse; Darius Daunys; George B J Dubelaar; Stephan Gollasch; Philippe Goulletquer; Anders Jelmert; Yuri Kantor; Kjersti Bringsvor Mézeth; Dan Minchin; Anna Occhipinti-Ambrogi; Irina Olenina; Jochen Vandekerkhove
Journal:  Mar Pollut Bull       Date:  2011-09-01       Impact factor: 5.553

5.  Metabarcoding approach for the ballast water surveillance--an advantageous solution or an awkward challenge?

Authors:  Anastasija Zaiko; Jose L Martinez; Julia Schmidt-Petersen; Deni Ribicic; Aurelija Samuiloviene; Eva Garcia-Vazquez
Journal:  Mar Pollut Bull       Date:  2015-01-24       Impact factor: 5.553

6.  Quantifying environmental DNA signals for aquatic invasive species across multiple detection platforms.

Authors:  Lucas M Nathan; Megan Simmons; Benjamin J Wegleitner; Christopher L Jerde; Andrew R Mahon
Journal:  Environ Sci Technol       Date:  2014-10-23       Impact factor: 9.028

7.  Real-time PCR detection of Didemnum perlucidum (Monniot, 1983) and Didemnum vexillum (Kott, 2002) in an applied routine marine biosecurity context.

Authors:  Tiffany J S Simpson; P Joana Dias; Michael Snow; Julieta Muñoz; Tina Berry
Journal:  Mol Ecol Resour       Date:  2016-08-29       Impact factor: 7.090

8.  First evaluation of foraminiferal metabarcoding for monitoring environmental impact from an offshore oil drilling site.

Authors:  Olivier Laroche; Susanna A Wood; Louis A Tremblay; Joanne I Ellis; Franck Lejzerowicz; Jan Pawlowski; Gavin Lear; Javier Atalah; Xavier Pochon
Journal:  Mar Environ Res       Date:  2016-08-24       Impact factor: 3.130

9.  Rapid treatment of vessels fouled with an invasive polychaete, Sabella spallanzanii, using a floating dock and chlorine as a biocide.

Authors:  Donald J Morrisey; Craig V Depree; Christopher W Hickey; Don S McKenzie; Irene Middleton; Matt D Smith; Michael Stewart; Karen J Thompson
Journal:  Biofouling       Date:  2016       Impact factor: 3.209

10.  Evaluating detection limits of next-generation sequencing for the surveillance and monitoring of international marine pests.

Authors:  Xavier Pochon; Nathan J Bott; Kirsty F Smith; Susanna A Wood
Journal:  PLoS One       Date:  2013-09-04       Impact factor: 3.240

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  2 in total

1.  Historical baselines in marine bioinvasions: Implications for policy and management.

Authors:  Henn Ojaveer; Bella S Galil; James T Carlton; Heidi Alleway; Philippe Goulletquer; Maiju Lehtiniemi; Agnese Marchini; Whitman Miller; Anna Occhipinti-Ambrogi; Melita Peharda; Gregory M Ruiz; Susan L Williams; Anastasija Zaiko
Journal:  PLoS One       Date:  2018-08-16       Impact factor: 3.240

2.  Combining morpho-taxonomy and metabarcoding enhances the detection of non-indigenous marine pests in biofouling communities.

Authors:  Ulla von Ammon; Susanna A Wood; Olivier Laroche; Anastasija Zaiko; Leigh Tait; Shane Lavery; Graeme J Inglis; Xavier Pochon
Journal:  Sci Rep       Date:  2018-11-02       Impact factor: 4.379

  2 in total

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