Literature DB >> 21349820

Classification of mouse sperm motility patterns using an automated multiclass support vector machines model.

Summer G Goodson1, Zhaojun Zhang, James K Tsuruta, Wei Wang, Deborah A O'Brien.   

Abstract

Vigorous sperm motility, including the transition from progressive to hyperactivated motility that occurs in the female reproductive tract, is required for normal fertilization in mammals. We developed an automated, quantitative method that objectively classifies five distinct motility patterns of mouse sperm using Support Vector Machines (SVM), a common method in supervised machine learning. This multiclass SVM model is based on more than 2000 sperm tracks that were captured by computer-assisted sperm analysis (CASA) during in vitro capacitation and visually classified as progressive, intermediate, hyperactivated, slow, or weakly motile. Parameters associated with the classified tracks were incorporated into established SVM algorithms to generate a series of equations. These equations were integrated into a binary decision tree that sequentially sorts uncharacterized tracks into distinct categories. The first equation sorts CASA tracks into vigorous and nonvigorous categories. Additional equations classify vigorous tracks as progressive, intermediate, or hyperactivated and nonvigorous tracks as slow or weakly motile. Our CASAnova software uses these SVM equations to classify individual sperm motility patterns automatically. Comparisons of motility profiles from sperm incubated with and without bicarbonate confirmed the ability of the model to distinguish hyperactivated patterns of motility that develop during in vitro capacitation. The model accurately classifies motility profiles of sperm from a mutant mouse model with severe motility defects. Application of the model to sperm from multiple inbred strains reveals strain-dependent differences in sperm motility profiles. CASAnova provides a rapid and reproducible platform for quantitative comparisons of motility in large, heterogeneous populations of mouse sperm.

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Year:  2011        PMID: 21349820      PMCID: PMC3099585          DOI: 10.1095/biolreprod.110.088989

Source DB:  PubMed          Journal:  Biol Reprod        ISSN: 0006-3363            Impact factor:   4.285


  43 in total

Review 1.  CASA--practical aspects.

Authors:  S T Mortimer
Journal:  J Androl       Date:  2000 Jul-Aug

Review 2.  Novel signaling pathways involved in sperm acquisition of fertilizing capacity.

Authors:  P E Visconti; V A Westbrook; O Chertihin; I Demarco; S Sleight; A B Diekman
Journal:  J Reprod Immunol       Date:  2002-01       Impact factor: 4.054

3.  Hyperactivated sperm motility driven by CatSper2 is required for fertilization.

Authors:  Timothy A Quill; Sarah A Sugden; Kristen L Rossi; Lynda K Doolittle; Robert E Hammer; David L Garbers
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

4.  The movement of golden hamster spermatozoa before and after capacitation.

Authors:  R Yanagimachi
Journal:  J Reprod Fertil       Date:  1970-10

5.  Motility patterns in mouse spermatozoa before and after capacitation.

Authors:  L R Fraser
Journal:  J Exp Zool       Date:  1977-12

6.  Hyperactivated motility of bull sperm is triggered at the axoneme by Ca2+ and not cAMP.

Authors:  Han-Chen Ho; Katherine A Granish; Susan S Suarez
Journal:  Dev Biol       Date:  2002-10-01       Impact factor: 3.582

7.  Bicarbonate actions on flagellar and Ca2+ -channel responses: initial events in sperm activation.

Authors:  Gunther Wennemuth; Anne E Carlson; Andrew J Harper; Donner F Babcock
Journal:  Development       Date:  2003-04       Impact factor: 6.868

8.  Quantitative analysis of flagellar movement in hyperactivated and acrosome-reacted golden hamster spermatozoa.

Authors:  Sumio Ishijima; Shoji A Baba; Hideo Mohri; Susan S Suarez
Journal:  Mol Reprod Dev       Date:  2002-03       Impact factor: 2.609

Review 9.  The biology of infertility: research advances and clinical challenges.

Authors:  Martin M Matzuk; Dolores J Lamb
Journal:  Nat Med       Date:  2008-11-06       Impact factor: 53.440

10.  Characterization of hyperactivated motility by human spermatozoa during capacitation: comparison of fertile and oligozoospermic sperm populations.

Authors:  L J Burkman
Journal:  Arch Androl       Date:  1984
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  58 in total

1.  Signaling in sperm: toward a molecular understanding of the acquisition of sperm motility in the mouse epididymis.

Authors:  Melissa L Vadnais; Haig K Aghajanian; Angel Lin; George L Gerton
Journal:  Biol Reprod       Date:  2013-11-27       Impact factor: 4.285

2.  Only a subpopulation of mouse sperm displays a rapid increase in intracellular calcium during capacitation.

Authors:  Guillermina M Luque; Tomas Dalotto-Moreno; David Martín-Hidalgo; Carla Ritagliati; Lis C Puga Molina; Ana Romarowski; Paula A Balestrini; Liza J Schiavi-Ehrenhaus; Nicolas Gilio; Dario Krapf; Pablo E Visconti; Mariano G Buffone
Journal:  J Cell Physiol       Date:  2018-06-28       Impact factor: 6.384

3.  Intracellular Ca2+ threshold reversibly switches flagellar beat off and on.

Authors:  C Sánchez-Cárdenas; F Montoya; F A Navarrete; A Hernández-Cruz; G Corkidi; P E Visconti; A Darszon
Journal:  Biol Reprod       Date:  2018-11-01       Impact factor: 4.285

4.  Metabolic substrates exhibit differential effects on functional parameters of mouse sperm capacitation.

Authors:  Summer G Goodson; Yunping Qiu; Keith A Sutton; Guoxiang Xie; Wei Jia; Deborah A O'Brien
Journal:  Biol Reprod       Date:  2012-09-28       Impact factor: 4.285

5.  Structural analyses to identify selective inhibitors of glyceraldehyde 3-phosphate dehydrogenase-S, a sperm-specific glycolytic enzyme.

Authors:  Polina V Danshina; Weidong Qu; Brenda R Temple; Rafael J Rojas; Michael J Miley; Mischa Machius; Laurie Betts; Deborah A O'Brien
Journal:  Mol Hum Reprod       Date:  2016-02-26       Impact factor: 4.025

6.  Knockout of mouse receptor accessory protein 6 leads to sperm function and morphology defects†.

Authors:  Darius J Devlin; Smriti Agrawal Zaneveld; Kaori Nozawa; Xiao Han; Abigail R Moye; Qingnan Liang; Jacob Michael Harnish; Martin M Matzuk; Rui Chen
Journal:  Biol Reprod       Date:  2020-05-26       Impact factor: 4.285

7.  Flow cytometry analysis reveals that only a subpopulation of mouse sperm undergoes hyperpolarization during capacitation.

Authors:  Jessica Escoffier; Felipe Navarrete; Doug Haddad; Celia M Santi; Alberto Darszon; Pablo E Visconti
Journal:  Biol Reprod       Date:  2015-04-08       Impact factor: 4.285

8.  CASAnova: a multiclass support vector machine model for the classification of human sperm motility patterns.

Authors:  Summer G Goodson; Sarah White; Alicia M Stevans; Sanjana Bhat; Chia-Yu Kao; Scott Jaworski; Tamara R Marlowe; Martin Kohlmeier; Leonard McMillan; Steven H Zeisel; Deborah A O'Brien
Journal:  Biol Reprod       Date:  2017-11-01       Impact factor: 4.285

9.  Disruption of protein kinase A localization induces acrosomal exocytosis in capacitated mouse sperm.

Authors:  Cintia Stival; Carla Ritagliati; Xinran Xu; Maria G Gervasi; Guillermina M Luque; Carolina Baró Graf; José Luis De la Vega-Beltrán; Nicolas Torres; Alberto Darszon; Diego Krapf; Mariano G Buffone; Pablo E Visconti; Dario Krapf
Journal:  J Biol Chem       Date:  2018-04-26       Impact factor: 5.157

10.  Glycolysis and mitochondrial respiration in mouse LDHC-null sperm.

Authors:  Fanny Odet; Scott Gabel; Robert E London; Erwin Goldberg; Edward M Eddy
Journal:  Biol Reprod       Date:  2013-04-18       Impact factor: 4.285

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