Literature DB >> 21342806

Development and initial results of a low cost, disposable, point-of-care testing device for pathogen detection.

Jane P Bearinger1, Lawrence C Dugan, Brian R Baker, Sara B Hall, Katja Ebert, Valerie Mioulet, Mikidache Madi, Donald P King.   

Abstract

Development of small footprint, disposable, fast, and inexpensive devices for pathogen detection in the field and clinic would benefit human and veterinary medicine by allowing evidence-based responses to future out breaks. We designed and tested an integrated nucleic acid extraction and amplification device employing a loop-mediated isothermal amplification (LAMP) or reverse transcriptase-LAMP assay. Our system provides a screening tool with polymerase-chain-reaction-level sensitivity and specificity for outbreak detection, response, and recovery. Time to result is ∼90 min. The device utilizes a swab that collects sample and then transfers it to a disc of cellulose-based nucleic acid binding paper. The disc is positioned within a disposable containment tube with a manual loading port. In order to test for the presence of target pathogens, LAMP reagents are loaded through the tube's port into contact with the sample containing cellulose disc. The reagents then are isothermally heated to 63°C for ∼1 h to achieve sequence-specific target nucleic acid amplification. Due to the presence of a colorimetric dye, amplification induces visible color change in the reagents from purple to blue. As initial demonstrations, we detected methicillin resistant Staphylococcus aureus genomic DNA, as well as recombinant and live foot-and-mouth disease virus.

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Year:  2011        PMID: 21342806      PMCID: PMC3071014          DOI: 10.1109/TBME.2010.2089054

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  17 in total

1.  Loop-mediated isothermal amplification reaction using a nondenatured template.

Authors:  K Nagamine; K Watanabe; K Ohtsuka; T Hase; T Notomi
Journal:  Clin Chem       Date:  2001-09       Impact factor: 8.327

2.  Development of loop-mediated isothermal amplification (LAMP) method for diagnosis of equine piroplasmosis.

Authors:  Andy Alhassan; Oriel M M Thekisoe; Naoaki Yokoyama; Noboru Inoue; Makhosazana Y Motloang; Peter A Mbati; Hong Yin; Yoshinari Katayama; Toru Anzai; Chihiro Sugimoto; Ikuo Igarashi
Journal:  Vet Parasitol       Date:  2006-09-14       Impact factor: 2.738

3.  Buccal swabs and treated cards: methodological considerations for molecular epidemiologic studies examining pediatric populations.

Authors:  Sara M Beckett; Stephen J Laughton; Luciano Dalla Pozza; Geoffrey B McCowage; Glenn Marshall; Richard J Cohn; Elizabeth Milne; Lesley J Ashton
Journal:  Am J Epidemiol       Date:  2008-03-07       Impact factor: 4.897

4.  Detection of African swine fever virus by loop-mediated isothermal amplification.

Authors:  Heather E James; K Ebert; R McGonigle; Scott M Reid; Neil Boonham; Jennifer A Tomlinson; Geoffrey H Hutchings; Mick Denyer; Chris A L Oura; Juliet P Dukes; Donald P King
Journal:  J Virol Methods       Date:  2009-12-04       Impact factor: 2.014

5.  Use of FTA card for dry collection, transportation and storage of cervical cell specimen to detect high-risk HPV.

Authors:  Inger Gustavsson; Monica Lindell; Erik Wilander; Anders Strand; Ulf Gyllensten
Journal:  J Clin Virol       Date:  2009-07-22       Impact factor: 3.168

6.  Development and evaluation of a novel loop-mediated isothermal amplification method for rapid detection of severe acute respiratory syndrome coronavirus.

Authors:  Thi Cam Thai Hong; Quynh Le Mai; Duc Vuong Cuong; Manmohan Parida; Harumi Minekawa; Tsugunori Notomi; Futoshi Hasebe; Kouichi Morita
Journal:  J Clin Microbiol       Date:  2004-05       Impact factor: 5.948

7.  Performance of real-time reverse transcription polymerase chain reaction for the detection of foot-and-mouth disease virus during field outbreaks in the United Kingdom in 2007.

Authors:  Scott M Reid; Katja Ebert; Katarzyna Bachanek-Bankowska; Carrie Batten; Anna Sanders; Caroline Wright; Andrew E Shaw; Eoin D Ryan; Geoffrey H Hutchings; Nigel P Ferris; David J Paton; Donald P King
Journal:  J Vet Diagn Invest       Date:  2009-05       Impact factor: 1.279

8.  Application of loop-mediated isothermal amplification technique to rapid and direct detection of methicillin-resistant Staphylococcus aureus (MRSA) in blood cultures.

Authors:  Yoshiki Misawa; Atsushi Yoshida; Ryoichi Saito; Honami Yoshida; Katsuko Okuzumi; Nobue Ito; Mitsumasa Okada; Kyoji Moriya; Kazuhiko Koike
Journal:  J Infect Chemother       Date:  2007-06-21       Impact factor: 2.211

9.  Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue.

Authors:  Motoki Goto; Eiichi Honda; Atsuo Ogura; Akio Nomoto; Ken-Ichi Hanaki
Journal:  Biotechniques       Date:  2009-03       Impact factor: 1.993

10.  Novel reverse transcription loop-mediated isothermal amplification for rapid detection of foot-and-mouth disease virus.

Authors:  J P Dukes; D P King; S Alexandersen
Journal:  Arch Virol       Date:  2006-02-02       Impact factor: 2.574

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  14 in total

1.  Detection of pathogen-specific antibodies by loop-mediated isothermal amplification.

Authors:  Ian E Burbulis; Kumiko Yamaguchi; Olga V Nikolskaia; Sean T Prigge; Stefan Magez; Sylvie Bisser; Megan E Reller; Dennis J Grab
Journal:  Clin Vaccine Immunol       Date:  2015-02-04

Review 2.  Advances in tuberculosis diagnostics: the Xpert MTB/RIF assay and future prospects for a point-of-care test.

Authors:  Stephen D Lawn; Peter Mwaba; Matthew Bates; Amy Piatek; Heather Alexander; Ben J Marais; Luis E Cuevas; Timothy D McHugh; Lynn Zijenah; Nathan Kapata; Ibrahim Abubakar; Ruth McNerney; Michael Hoelscher; Ziad A Memish; Giovanni Battista Migliori; Peter Kim; Markus Maeurer; Marco Schito; Alimuddin Zumla
Journal:  Lancet Infect Dis       Date:  2013-03-24       Impact factor: 25.071

3.  Instrument-free nucleic acid amplification assays for global health settings.

Authors:  Paul LaBarre; David Boyle; Kenneth Hawkins; Bernhard Weigl
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2011-05-16

4.  Development of a rapid, simple method for detecting Naegleria fowleri visually in water samples by loop-mediated isothermal amplification (LAMP).

Authors:  Aongart Mahittikorn; Hirotake Mori; Supaluk Popruk; Amonrattana Roobthaisong; Chantira Sutthikornchai; Khuanchai Koompapong; Sukhontha Siri; Yaowalark Sukthana; Duangporn Nacapunchai
Journal:  PLoS One       Date:  2015-03-30       Impact factor: 3.240

5.  A novel approach for evaluating the performance of real time quantitative loop-mediated isothermal amplification-based methods.

Authors:  Gavin J Nixon; Helle F Svenstrup; Carol E Donald; Caroline Carder; Judith M Stephenson; Stephen Morris-Jones; Jim F Huggett; Carole A Foy
Journal:  Biomol Detect Quantif       Date:  2014-11-22

6.  Rapid and sensitive detection of Senecavirus A by reverse transcription loop-mediated isothermal amplification combined with a lateral flow dipstick method.

Authors:  Jinhui Li; Weifang Liang; Shuaifei Xu; Jian Shi; Xia Zhou; Bowen Liu; Li Yu; Jingfeng Xiong; Guangbin Si; Dongsheng He
Journal:  PLoS One       Date:  2019-05-02       Impact factor: 3.240

7.  Loop-mediated isothermal amplification for Rickettsia typhi (the causal agent of murine typhus): problems with diagnosis at the limit of detection.

Authors:  Sabine Dittrich; Josée Castonguay-Vanier; Catrin E Moore; Narongchai Thongyoo; Paul N Newton; Daniel H Paris
Journal:  J Clin Microbiol       Date:  2013-12-26       Impact factor: 5.948

8.  Preliminary validation of direct detection of foot-and-mouth disease virus within clinical samples using reverse transcription loop-mediated isothermal amplification coupled with a simple lateral flow device for detection.

Authors:  Ryan A Waters; Veronica L Fowler; Bryony Armson; Noel Nelson; John Gloster; David J Paton; Donald P King
Journal:  PLoS One       Date:  2014-08-28       Impact factor: 3.240

9.  Evaluation of Two Lyophilized Molecular Assays to Rapidly Detect Foot-and-Mouth Disease Virus Directly from Clinical Samples in Field Settings.

Authors:  E L A Howson; B Armson; M Madi; C J Kasanga; S Kandusi; R Sallu; E Chepkwony; A Siddle; P Martin; J Wood; V Mioulet; D P King; T Lembo; S Cleaveland; V L Fowler
Journal:  Transbound Emerg Dis       Date:  2015-11-30       Impact factor: 5.005

Review 10.  Laboratory-Based and Point-of-Care Testing for MSSA/MRSA Detection in the Age of Whole Genome Sequencing.

Authors:  Alex van Belkum; Olivier Rochas
Journal:  Front Microbiol       Date:  2018-06-29       Impact factor: 5.640

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