Literature DB >> 25089171

Instrument-free nucleic acid amplification assays for global health settings.

Paul LaBarre1, David Boyle1, Kenneth Hawkins1, Bernhard Weigl1.   

Abstract

Many infectious diseases that affect global health are most accurately diagnosed through nucleic acid amplification and detection. However, existing nucleic acid amplification tests are too expensive and complex for most low-resource settings. The small numbers of centralized laboratories that exist in developing countries tend to be in urban areas and primarily cater to the affluent. In contrast, rural area health care facilities commonly have only basic equipment and health workers have limited training and little ability to maintain equipment and handle reagents.1 Reliable electric power is a common infrastructure shortfall. In this paper, we discuss a practical approach to the design and development of non-instrumented molecular diagnostic tests that exploit the benefits of isothermal amplification strategies. We identify modular instrument-free technologies for sample collection, sample preparation, amplification, heating, and detection. By appropriately selecting and integrating these instrument-free modules, we envision development of an easy to use, infrastructure independent diagnostic test that will enable increased use of highly accurate molecular diagnostics at the point of care in low-resource settings.

Entities:  

Keywords:  Low-resource settings; infection detection; laminar flow; molecular diagnostics; non-instrumented diagnostics; nucleic acid amplification; point of care diagnostics; sample preparation

Year:  2011        PMID: 25089171      PMCID: PMC4116599          DOI: 10.1117/12.882868

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  60 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  Reducing the burden of childhood malaria in Africa: the role of improved.

Authors:  Maria E Rafael; Terrie Taylor; Alan Magill; Yee-Wei Lim; Federico Girosi; Richard Allan
Journal:  Nature       Date:  2006-11-23       Impact factor: 49.962

3.  Global cost modeling analysis of HIV-1 and HCV viral load assays.

Authors:  Tarek Elbeik; Yi-Ming Arthur Chen; Serguei V Soutchkov; Richard A Loftus; Scott Beringer
Journal:  Expert Rev Pharmacoecon Outcomes Res       Date:  2003-08       Impact factor: 2.217

4.  Engineering global health.

Authors:  Paul LaBarre
Journal:  IEEE Pulse       Date:  2011 Jan-Feb       Impact factor: 0.924

5.  Direct detection of human herpesvirus 6 DNA in serum by the loop-mediated isothermal amplification method.

Authors:  Masaru Ihira; Shiho Akimoto; Fumi Miyake; Ayano Fujita; Ken Sugata; Sadao Suga; Masahiro Ohashi; Naoko Nishimura; Takao Ozaki; Yoshizo Asano; Tetsushi Yoshikawa
Journal:  J Clin Virol       Date:  2007-03-21       Impact factor: 3.168

Review 6.  Rapid diagnostic tests for malaria parasites.

Authors:  Anthony Moody
Journal:  Clin Microbiol Rev       Date:  2002-01       Impact factor: 26.132

7.  Helicase-dependent isothermal DNA amplification.

Authors:  Myriam Vincent; Yan Xu; Huimin Kong
Journal:  EMBO Rep       Date:  2004-07-09       Impact factor: 8.807

8.  Early diagnosis of human immunodeficiency virus in infants using polymerase chain reaction on dried blood spots in Botswana's national program for prevention of mother-to-child transmission.

Authors:  Tracy Creek; Amilcar Tanuri; Monica Smith; Khumo Seipone; Molly Smit; Keitumetse Legwaila; Catherine Motswere; Maruping Maruping; Tapologo Nkoane; Ralph Ntumy; Ebi Bile; Madisa Mine; Lydia Lu; Goitebetswe Tebele; Loeto Mazhani; Margarett K Davis; Thierry H Roels; Peter H Kilmarx; Nathan Shaffer
Journal:  Pediatr Infect Dis J       Date:  2008-01       Impact factor: 2.129

9.  Rapid detection of HIV-1 by reverse-transcription, loop-mediated isothermal amplification (RT-LAMP).

Authors:  Kelly A Curtis; Donna L Rudolph; S Michele Owen
Journal:  J Virol Methods       Date:  2008-06-03       Impact factor: 2.014

10.  Comparison of commercial viral genomic extraction kits for the molecular detection of foodborne viruses.

Authors:  Julie Brassard; Lisyanne Lamoureux; Marie-Josée Gagné; Elyse Poitras; Yvon-Louis Trottier; Alain Houde
Journal:  Can J Microbiol       Date:  2009-08       Impact factor: 2.419

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  8 in total

1.  Emerging Loop-Mediated Isothermal Amplification-Based Microchip and Microdevice Technologies for Nucleic Acid Detection.

Authors:  Mohammadali Safavieh; Manoj K Kanakasabapathy; Farhang Tarlan; Minhaz U Ahmed; Mohammed Zourob; Waseem Asghar; Hadi Shafiee
Journal:  ACS Biomater Sci Eng       Date:  2016-01-21

2.  A Multifunctional Reactor with Dry-Stored Reagents for Enzymatic Amplification of Nucleic Acids.

Authors:  Jinzhao Song; Changchun Liu; Michael G Mauk; Jing Peng; Thomas Schoenfeld; Haim H Bau
Journal:  Anal Chem       Date:  2017-12-22       Impact factor: 6.986

3.  Fabrication of Wearable PDMS Device for Rapid Detection of Nucleic Acids via Recombinase Polymerase Amplification Operated by Human Body Heat.

Authors:  Kieu The Loan Trinh; Nae Yoon Lee
Journal:  Biosensors (Basel)       Date:  2022-01-27

4.  Single-use, electricity-free amplification device for detection of HIV-1.

Authors:  Kelly A Curtis; Donna L Rudolph; Daphne Morrison; Dylan Guelig; Steven Diesburg; David McAdams; Robert A Burton; Paul LaBarre; Michele Owen
Journal:  J Virol Methods       Date:  2016-09-08       Impact factor: 2.014

5.  Evaluating quality management systems for HIV rapid testing services in primary healthcare clinics in rural KwaZulu-Natal, South Africa.

Authors:  Ziningi Jaya; Paul K Drain; Tivani P Mashamba-Thompson
Journal:  PLoS One       Date:  2017-08-22       Impact factor: 3.240

6.  Ultrasensitive electrochemical genosensors for species-specific diagnosis of malaria.

Authors:  Felix Ansah; Francis Krampa; Jacob K Donkor; Caleb Owusu-Appiah; Sarah Ashitei; Victor E Kornu; Reinhard K Danku; Jersley D Chirawurah; Gordon A Awandare; Yaw Aniweh; Prosper Kanyong
Journal:  Electrochim Acta       Date:  2022-10-10       Impact factor: 7.336

7.  Electricity-free chemical heater for isothermal nucleic acid amplification with applications in COVID-19 home testing.

Authors:  Rui Jie Li; Michael G Mauk; Youngung Seok; Haim H Bau
Journal:  Analyst       Date:  2021-06-28       Impact factor: 5.227

8.  Microfluidics-Based Approaches to the Isolation of African Trypanosomes.

Authors:  Michael P Barrett; Jonathan M Cooper; Clément Regnault; Stefan H Holm; Jason P Beech; Jonas O Tegenfeldt; Axel Hochstetter
Journal:  Pathogens       Date:  2017-10-05
  8 in total

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