Literature DB >> 19457360

Active fibers: matching deformable tract templates to diffusion tensor images.

Ilya Eckstein1, David W Shattuck, Jason L Stein, Katie L McMahon, Greig de Zubicaray, Margaret J Wright, Paul M Thompson, Arthur W Toga.   

Abstract

Reliable quantitative analysis of white matter connectivity in the brain is an open problem in neuroimaging, with common solutions requiring tools for fiber tracking, tractography segmentation and estimation of intersubject correspondence. This paper proposes a novel, template matching approach to the problem. In the proposed method, a deformable fiber-bundle model is aligned directly with the subject tensor field, skipping the fiber tracking step. Furthermore, the use of a common template eliminates the need for tractography segmentation and defines intersubject shape correspondence. The method is validated using phantom DTI data and applications are presented, including automatic fiber-bundle reconstruction and tract-based morphometry.

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Year:  2009        PMID: 19457360      PMCID: PMC2720421          DOI: 10.1016/j.neuroimage.2009.01.065

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  22 in total

1.  Fiber tract-based atlas of human white matter anatomy.

Authors:  Setsu Wakana; Hangyi Jiang; Lidia M Nagae-Poetscher; Peter C M van Zijl; Susumu Mori
Journal:  Radiology       Date:  2003-11-26       Impact factor: 11.105

2.  Nonlinear registration of diffusion MR images based on fiber bundles.

Authors:  Ulas Ziyan; Mert R Sabuncu; Lauren J O'Donnell; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

3.  Generalized surface flows for deformable registration and cortical matching.

Authors:  I Eckstein; A A Joshi; C C J Kuo; R Leahy; M Desbrun
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

4.  A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.

Authors:  P Thomas Fletcher; Ran Tao; Won-Ki Jeong; Ross T Whitaker
Journal:  Inf Process Med Imaging       Date:  2007

5.  Fluid registration of diffusion tensor images using information theory.

Authors:  M C Chiang; A D Leow; A D Klunder; R A Dutton; M Barysheva; S E Rose; K L McMahon; G I de Zubicaray; A W Toga; P M Thompson
Journal:  IEEE Trans Med Imaging       Date:  2008-04       Impact factor: 10.048

6.  Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI.

Authors:  P J Basser; C Pierpaoli
Journal:  J Magn Reson B       Date:  1996-06

7.  Fiber-tracking does not accurately estimate size of fiber bundle in pathological condition: initial neurosurgical experience using neuronavigation and subcortical white matter stimulation.

Authors:  Manabu Kinoshita; Kei Yamada; Naoya Hashimoto; Amami Kato; Shuichi Izumoto; Takahito Baba; Motohiko Maruno; Tsunehiko Nishimura; Toshiki Yoshimine
Journal:  Neuroimage       Date:  2005-04-01       Impact factor: 6.556

8.  Anisotropic Laplace-Beltrami Eigenmaps: Bridging Reeb Graphs and Skeletons.

Authors:  Yonggang Shi; Rongjie Lai; Sheila Krishna; Nancy Sicotte; Ivo Dinov; Arthur W Toga
Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit       Date:  2008-07-15

9.  Automated fiber tracking of human brain white matter using diffusion tensor imaging.

Authors:  Weihong Zhang; Alessandro Olivi; Samuel J Hertig; Peter van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2008-04-30       Impact factor: 6.556

10.  Between session reproducibility and between subject variability of diffusion MR and tractography measures.

Authors:  E Heiervang; T E J Behrens; C E Mackay; M D Robson; H Johansen-Berg
Journal:  Neuroimage       Date:  2006-09-26       Impact factor: 6.556

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  8 in total

1.  Direct segmentation of the major white matter tracts in diffusion tensor images.

Authors:  Pierre-Louis Bazin; Chuyang Ye; John A Bogovic; Navid Shiee; Daniel S Reich; Jerry L Prince; Dzung L Pham
Journal:  Neuroimage       Date:  2011-06-21       Impact factor: 6.556

2.  System for integrated neuroimaging analysis and processing of structure.

Authors:  Bennett A Landman; John A Bogovic; Aaron Carass; Min Chen; Snehashis Roy; Navid Shiee; Zhen Yang; Bhaskar Kishore; Dzung Pham; Pierre-Louis Bazin; Susan M Resnick; Jerry L Prince
Journal:  Neuroinformatics       Date:  2013-01

3.  Automated delineation of white matter fiber tracts with a multiple region-of-interest approach.

Authors:  Ralph O Suarez; Olivier Commowick; Sanjay P Prabhu; Simon K Warfield
Journal:  Neuroimage       Date:  2011-11-27       Impact factor: 6.556

4.  Tubular surface segmentation for extracting anatomical structures from medical imagery.

Authors:  Vandana Mohan; Ganesh Sundaramoorthi; Allen Tannenbaum
Journal:  IEEE Trans Med Imaging       Date:  2010-12       Impact factor: 10.048

5.  Along-tract statistics allow for enhanced tractography analysis.

Authors:  John B Colby; Lindsay Soderberg; Catherine Lebel; Ivo D Dinov; Paul M Thompson; Elizabeth R Sowell
Journal:  Neuroimage       Date:  2011-11-09       Impact factor: 6.556

Review 6.  Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: A review.

Authors:  Fan Zhang; Alessandro Daducci; Yong He; Simona Schiavi; Caio Seguin; Robert E Smith; Chun-Hung Yeh; Tengda Zhao; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2022-01-01       Impact factor: 7.400

7.  Segmentation of corpus callosum using diffusion tensor imaging: validation in patients with glioblastoma.

Authors:  Mohammad-Reza Nazem-Zadeh; Sona Saksena; Abbas Babajani-Fermi; Quan Jiang; Hamid Soltanian-Zadeh; Mark Rosenblum; Tom Mikkelsen; Rajan Jain
Journal:  BMC Med Imaging       Date:  2012-05-16       Impact factor: 1.930

8.  Bayesian Tractography Using Geometric Shape Priors.

Authors:  Xiaoming Dong; Zhengwu Zhang; Anuj Srivastava
Journal:  Front Neurosci       Date:  2017-09-07       Impact factor: 4.677

  8 in total

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