Literature DB >> 21335636

Single-polymer dynamics under constraints: scaling theory and computer experiment.

Andrey Milchev1.   

Abstract

The relaxation, diffusion and translocation dynamics of single linear polymer chains in confinement is briefly reviewed with emphasis on the comparison between theoretical scaling predictions and observations from experiment or, most frequently, from computer simulations. Besides cylindrical, spherical and slit-like constraints, related problems such as the chain dynamics in a random medium and the translocation dynamics through a nanopore are also considered. Another particular kind of confinement is imposed by polymer adsorption on attractive surfaces or selective interfaces--a short overview of single-chain dynamics is also contained in this survey. While both theory and numerical experiments consider predominantly coarse-grained models of self-avoiding linear chain molecules with typically Rouse dynamics, we also note some recent studies which examine the impact of hydrodynamic interactions on polymer dynamics in confinement. In all of the aforementioned cases we focus mainly on the consequences of imposed geometric restrictions on single-chain dynamics and try to check our degree of understanding by assessing the agreement between theoretical predictions and observations.

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Year:  2011        PMID: 21335636     DOI: 10.1088/0953-8984/23/10/103101

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  14 in total

1.  Fluctuation modes of nanoconfined DNA.

Authors:  Alena Karpusenko; Joshua H Carpenter; Chunda Zhou; Shuang Fang Lim; Junhan Pan; Robert Riehn
Journal:  J Appl Phys       Date:  2012-01-17       Impact factor: 2.546

2.  Presentation of large DNA molecules for analysis as nanoconfined dumbbells.

Authors:  Kristy L Kounovsky-Shafer; Juan P Hernández-Ortiz; Kyubong Jo; Theo Odijk; Juan J de Pablo; David C Schwartz
Journal:  Macromolecules       Date:  2013-10-22       Impact factor: 5.985

3.  Direct Sensing and Discrimination among Ubiquitin and Ubiquitin Chains Using Solid-State Nanopores.

Authors:  Iftach Nir; Diana Huttner; Amit Meller
Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

4.  Cross-over in the dynamics of polymer confined between two liquids of different viscosity.

Authors:  Giuliana Giunta; Paola Carbone
Journal:  Interface Focus       Date:  2019-04-19       Impact factor: 3.906

5.  On the Lubensky-Nelson model of polymer translocation through nanopores.

Authors:  Peter Reimann; Andreas Meyer; Sebastian Getfert
Journal:  Biophys J       Date:  2012-09-05       Impact factor: 4.033

6.  Dynamical diagram and scaling in polymer driven translocation.

Authors:  T Saito; T Sakaue
Journal:  Eur Phys J E Soft Matter       Date:  2011-12-28       Impact factor: 1.890

7.  Escape of DNA from a weakly biased thin nanopore: experimental evidence for a universal diffusive behavior.

Authors:  David P Hoogerheide; Fernando Albertorio; Jene A Golovchenko
Journal:  Phys Rev Lett       Date:  2013-12-12       Impact factor: 9.161

Review 8.  Slowing and controlling the translocation of DNA in a solid-state nanopore.

Authors:  Binquan Luan; Gustavo Stolovitzky; Glenn Martyna
Journal:  Nanoscale       Date:  2011-11-14       Impact factor: 7.790

9.  DNA barcodes using a double nanopore system.

Authors:  Swarnadeep Seth; Aniket Bhattacharya
Journal:  Sci Rep       Date:  2021-05-07       Impact factor: 4.379

10.  A general theory of polymer ejection tested in a quasi two-dimensional space.

Authors:  Pai-Yi Hsiao; Wei-Yei Chen
Journal:  Sci Rep       Date:  2021-07-19       Impact factor: 4.379

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