Literature DB >> 23009838

On the Lubensky-Nelson model of polymer translocation through nanopores.

Peter Reimann1, Andreas Meyer, Sebastian Getfert.   

Abstract

We revisit the one-dimensional stochastic model of an earlier study by D. K. Lubensky and D. R. Nelson for the electrically driven translocation of polynucleotides through α-hemolysin pores. We show that the model correctly describes two further important properties of the experimentally observed translocation time distributions, namely their spread (width) and their exponential decay. The resulting overall agreement between theoretical and experimental translocation time distributions is thus very good.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23009838      PMCID: PMC3433617          DOI: 10.1016/j.bpj.2012.07.036

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

1.  Driven polymer translocation through a narrow pore.

Authors:  D K Lubensky; D R Nelson
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  Rapid nanopore discrimination between single polynucleotide molecules.

Authors:  A Meller; L Nivon; E Brandin; J Golovchenko; D Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

3.  Dynamics of molecular motors and polymer translocation with sequence heterogeneity.

Authors:  Yariv Kafri; David K Lubensky; David R Nelson
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

4.  DNA heterogeneity and phosphorylation unveiled by single-molecule electrophoresis.

Authors:  Hui Wang; James E Dunning; Albert P-H Huang; Jacqueline A Nyamwanda; Daniel Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-01       Impact factor: 11.205

5.  Orientation discrimination of single-stranded DNA inside the alpha-hemolysin membrane channel.

Authors:  Jérôme Mathé; Aleksei Aksimentiev; David R Nelson; Klaus Schulten; Amit Meller
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-19       Impact factor: 11.205

6.  Effect of salt concentration on the electrophoretic speed of a polyelectrolyte through a nanopore.

Authors:  Sandip Ghosal
Journal:  Phys Rev Lett       Date:  2007-06-07       Impact factor: 9.161

7.  Sequence dependence of DNA translocation through a nanopore.

Authors:  Kaifu Luo; Tapio Ala-Nissila; See-Chen Ying; Aniket Bhattacharya
Journal:  Phys Rev Lett       Date:  2008-02-05       Impact factor: 9.161

Review 8.  Single-polymer dynamics under constraints: scaling theory and computer experiment.

Authors:  Andrey Milchev
Journal:  J Phys Condens Matter       Date:  2011-02-18       Impact factor: 2.333

9.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

10.  The distribution of DNA translocation times in solid-state nanopores.

Authors:  Jiali Li; David S Talaga
Journal:  J Phys Condens Matter       Date:  2010-10-29       Impact factor: 2.333

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  3 in total

1.  On the distribution of DNA translocation times in solid-state nanopores: an analysis using Schrödinger's first-passage-time theory.

Authors:  Daniel Y Ling; Xinsheng Sean Ling
Journal:  J Phys Condens Matter       Date:  2013-09-18       Impact factor: 2.333

2.  DNA translocation through pH-dependent soft nanopores.

Authors:  Alireza Yousefi; Ardalan Ganjizade; Seyed Nezameddin Ashrafizadeh
Journal:  Eur Biophys J       Date:  2021-06-13       Impact factor: 1.733

Review 3.  Computational studies of DNA sequencing with solid-state nanopores: key issues and future prospects.

Authors:  Lijun Liang; Qi Wang; Hans Agren; Yaoquan Tu
Journal:  Front Chem       Date:  2014-02-21       Impact factor: 5.221

  3 in total

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