Literature DB >> 21322735

Biomolecules under mechanical stress: a simple mechanism of complex behavior.

Yohichi Suzuki1, Olga K Dudko.   

Abstract

The unfolding of a biomolecule by stretching force is commonly treated theoretically as one-dimensional dynamics along the reaction coordinate coincident with the direction of pulling. Here we explore a situation, particularly relevant to complex biomolecules, when the pulling direction alone is not an adequate reaction coordinate for the unfolding or rupture process. We show that in this case the system can respond to pulling force in unusual ways. Our theory points out a remarkably simple, but largely overlooked, mechanism of the complex responses of biomolecules to force. The mechanism originates from the basic property of the transition state to change its structure under applied force. A relationship is established between a key experimental observable--force-dependent lifetime--and the microscopic properties of the biomolecule in the form of an analytical solution to the problem of a force-induced molecular transition in two dimensions. The theory is applicable to biological contexts ranging from protein folding to ligand-receptor interactions.

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Year:  2011        PMID: 21322735     DOI: 10.1063/1.3533366

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  Extracting intrinsic dynamic parameters of biomolecular folding from single-molecule force spectroscopy experiments.

Authors:  Gi-Moon Nam; Dmitrii E Makarov
Journal:  Protein Sci       Date:  2015-07-14       Impact factor: 6.725

2.  Force-Dependent Facilitated Dissociation Can Generate Protein-DNA Catch Bonds.

Authors:  Katelyn Dahlke; Jing Zhao; Charles E Sing; Edward J Banigan
Journal:  Biophys J       Date:  2019-08-02       Impact factor: 4.033

3.  A Unified Walking Model for Dimeric Motor Proteins.

Authors:  Kazuo Sasaki; Motoshi Kaya; Hideo Higuchi
Journal:  Biophys J       Date:  2018-10-16       Impact factor: 4.033

4.  Magnetic tweezers-based force clamp reveals mechanically distinct apCAM domain interactions.

Authors:  Devrim Kilinc; Agata Blasiak; James J O'Mahony; Daniel M Suter; Gil U Lee
Journal:  Biophys J       Date:  2012-09-19       Impact factor: 4.033

Review 5.  How Do We Know when Single-Molecule Force Spectroscopy Really Tests Single Bonds?

Authors:  Keith C Johnson; Wendy E Thomas
Journal:  Biophys J       Date:  2018-05-08       Impact factor: 4.033

Review 6.  Single-molecule nanometry for biological physics.

Authors:  Hajin Kim; Taekjip Ha
Journal:  Rep Prog Phys       Date:  2012-12-18

7.  Quantifying short-lived events in multistate ionic current measurements.

Authors:  Arvind Balijepalli; Jessica Ettedgui; Andrew T Cornio; Joseph W F Robertson; Kin P Cheung; John J Kasianowicz; Canute Vaz
Journal:  ACS Nano       Date:  2014-01-14       Impact factor: 15.881

8.  Mechanical unfolding of spectrin reveals a super-exponential dependence of unfolding rate on force.

Authors:  J P Renn; S Bhattacharyya; H Bai; C He; H Li; A F Oberhauser; J F Marko; D E Makarov; A Matouschek
Journal:  Sci Rep       Date:  2019-07-31       Impact factor: 4.379

9.  Probing Ligand-Receptor Interaction in Living Cells Using Force Measurements With Optical Tweezers.

Authors:  Carolin Riesenberg; Christian Alejandro Iriarte-Valdez; Annegret Becker; Maria Dienerowitz; Alexander Heisterkamp; Anaclet Ngezahayo; Maria Leilani Torres-Mapa
Journal:  Front Bioeng Biotechnol       Date:  2020-11-17
  9 in total

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