Literature DB >> 21322496

Fe-H/D stretching and bending modes in nuclear resonant vibrational, Raman and infrared spectroscopies: comparisons of density functional theory and experiment.

Vladimir Pelmenschikov1, Yisong Guo, Hongxin Wang, Stephen P Cramer, David A Case.   

Abstract

Infrared, Raman, and nuclear resonant vibrational (NRVS) spectroscopies have been used to address the pan class="Chemical">Fe-H bonding in trans-HFe(CO) iron hydride compound, HFe(CO)(dppe)2, dppe = 1,2-bis(diphenylphosphino)ethane. H and D isotopomers of the compound, with selective substitution at the metal-coordinated hydrogen, have been considered in order to address the Fe-H/D stretching and bending modes. Experimental results are compared to the normal mode analysis by density functional theory (DFT). The results are that (i) the IR spectrum does not clearly show Fe-H stretching or bending modes; (ii) Fe-H stretching modes are clear but weak in the Raman spectrum, and Fe-H bending modes are weak; (iii) NRVS 57Fe spectroscopy resolves Fe-H bending clearly, but Fe-H or Fe-D stretching is above its experimentally resolved frequency range. DFT calculations (with no scaling of frequencies) show intensities and peak locations that allow unambiguous correlations between observed and calculated features, with frequency errors generally less than 15 cm(-1). Prospects for using these techniques to unravel vibrational modes of protein active sites are discussed.

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Year:  2011        PMID: 21322496      PMCID: PMC3058621          DOI: 10.1039/c004367m

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  18 in total

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Authors:  Cédric Tard; Christopher J Pickett
Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

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Journal:  Inorg Chem       Date:  1999-12-27       Impact factor: 5.165

8.  Quantitative vibrational dynamics of iron in nitrosyl porphyrins.

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Journal:  J Am Chem Soc       Date:  2004-04-07       Impact factor: 15.419

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Authors:  Yisong Guo; Hongxin Wang; Yuming Xiao; Sonja Vogt; Rudolf K Thauer; Seigo Shima; Phillip I Volkers; Thomas B Rauchfuss; Vladimir Pelmenschikov; David A Case; Ercan E Alp; Wolfgang Sturhahn; Yoshitaka Yoda; Stephen P Cramer
Journal:  Inorg Chem       Date:  2008-04-12       Impact factor: 5.165

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Journal:  J Am Chem Soc       Date:  2009-08-12       Impact factor: 15.419

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  11 in total

Review 1.  Hydrogenase Enzymes and Their Synthetic Models: The Role of Metal Hydrides.

Authors:  David Schilter; James M Camara; Mioy T Huynh; Sharon Hammes-Schiffer; Thomas B Rauchfuss
Journal:  Chem Rev       Date:  2016-06-29       Impact factor: 60.622

2.  High-Frequency Fe-H Vibrations in a Bridging Hydride Complex Characterized by NRVS and DFT.

Authors:  Vladimir Pelmenschikov; Leland B Gee; Hongxin Wang; K Cory MacLeod; Sean F McWilliams; Kazimer L Skubi; Stephen P Cramer; Patrick L Holland
Journal:  Angew Chem Int Ed Engl       Date:  2018-06-25       Impact factor: 15.336

3.  Nuclear Resonance Vibrational Spectroscopy: A Modern Tool to Pinpoint Site-Specific Cooperative Processes.

Authors:  Hongxin Wang; Artur Braun; Stephen P Cramer; Leland B Gee; Yoshitaka Yoda
Journal:  Catalysts       Date:  2021-08-02       Impact factor: 4.501

4.  Sterically Stabilized Terminal Hydride of a Diiron Dithiolate.

Authors:  Michaela R Carlson; Danielle L Gray; Casseday P Richers; Wenguang Wang; Pei-Hua Zhao; Thomas B Rauchfuss; Vladimir Pelmenschikov; Cindy C Pham; Leland B Gee; Hongxin Wang; Stephen P Cramer
Journal:  Inorg Chem       Date:  2018-01-31       Impact factor: 5.165

5.  Reaction Coordinate Leading to H2 Production in [FeFe]-Hydrogenase Identified by Nuclear Resonance Vibrational Spectroscopy and Density Functional Theory.

Authors:  Vladimir Pelmenschikov; James A Birrell; Cindy C Pham; Nakul Mishra; Hongxin Wang; Constanze Sommer; Edward Reijerse; Casseday P Richers; Kenji Tamasaku; Yoshitaka Yoda; Thomas B Rauchfuss; Wolfgang Lubitz; Stephen P Cramer
Journal:  J Am Chem Soc       Date:  2017-11-09       Impact factor: 15.419

6.  On the Structure and Reaction Mechanism of Human Acireductone Dioxygenase.

Authors:  Anna Miłaczewska; Ewa Kot; José A Amaya; Thomas M Makris; Marcin Zając; Józef Korecki; Aleksandr Chumakov; Bartosz Trzewik; Sylwia Kędracka-Krok; Władek Minor; Maksymilian Chruszcz; Tomasz Borowski
Journal:  Chemistry       Date:  2018-01-11       Impact factor: 5.236

7.  Low frequency dynamics of the nitrogenase MoFe protein via femtosecond pump probe spectroscopy - Observation of a candidate promoting vibration.

Authors:  Margherita Maiuri; Ines Delfino; Giulio Cerullo; Cristian Manzoni; Vladimir Pelmenschikov; Yisong Guo; Hongxin Wang; Leland B Gee; Christie H Dapper; William E Newton; Stephen P Cramer
Journal:  J Inorg Biochem       Date:  2015-07-14       Impact factor: 4.155

8.  Observation of the Fe-CN and Fe-CO vibrations in the active site of [NiFe] hydrogenase by nuclear resonance vibrational spectroscopy.

Authors:  Saeed Kamali; Hongxin Wang; Devrani Mitra; Hideaki Ogata; Wolfgang Lubitz; Brian C Manor; Thomas B Rauchfuss; Deborah Byrne; Violaine Bonnefoy; Francis E Jenney; Michael W W Adams; Yoshitaka Yoda; Ercan Alp; Jiyong Zhao; Stephen P Cramer
Journal:  Angew Chem Int Ed Engl       Date:  2012-11-08       Impact factor: 15.336

9.  Hydride bridge in [NiFe]-hydrogenase observed by nuclear resonance vibrational spectroscopy.

Authors:  Hideaki Ogata; Tobias Krämer; Hongxin Wang; David Schilter; Vladimir Pelmenschikov; Maurice van Gastel; Frank Neese; Thomas B Rauchfuss; Leland B Gee; Aubrey D Scott; Yoshitaka Yoda; Yoshihito Tanaka; Wolfgang Lubitz; Stephen P Cramer
Journal:  Nat Commun       Date:  2015-08-10       Impact factor: 14.919

10.  A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel-iron-hydride in [NiFe] hydrogenase.

Authors:  Hongxin Wang; Yoshitaka Yoda; Hideaki Ogata; Yoshihito Tanaka; Wolfgang Lubitz
Journal:  J Synchrotron Radiat       Date:  2015-10-23       Impact factor: 2.616

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