Literature DB >> 21316217

The ribosomal tunnel as a functional environment for nascent polypeptide folding and translational stalling.

Daniel N Wilson1, Roland Beckmann.   

Abstract

As the nascent polypeptide chain is being synthesized, it passes through a tunnel within the large ribosomal subunit and emerges at the solvent side where protein folding occurs. Despite the universality and conservation of dimensions of the ribosomal tunnel, a functional role for the ribosomal tunnel is only beginning to emerge: Rather than a passive conduit for the nascent chain, accumulating evidence indicates that the tunnel plays a more active role. In this article, we discuss recent structural insights into the role of the tunnel environment, and its implications for protein folding, co-translational targeting and translation regulation.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21316217     DOI: 10.1016/j.sbi.2011.01.007

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  84 in total

Review 1.  One core, two shells: bacterial and eukaryotic ribosomes.

Authors:  Sergey Melnikov; Adam Ben-Shem; Nicolas Garreau de Loubresse; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

2.  Differences in the path to exit the ribosome across the three domains of life.

Authors:  Khanh Dao Duc; Sanjit S Batra; Nicholas Bhattacharya; Jamie H D Cate; Yun S Song
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

3.  Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P.

Authors:  Lauri Peil; Agata L Starosta; Jürgen Lassak; Gemma C Atkinson; Kai Virumäe; Michaela Spitzer; Tanel Tenson; Kirsten Jung; Jaanus Remme; Daniel N Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-03       Impact factor: 11.205

4.  Ribosome. Mechanical force releases nascent chain-mediated ribosome arrest in vitro and in vivo.

Authors:  Daniel H Goldman; Christian M Kaiser; Anthony Milin; Maurizio Righini; Ignacio Tinoco; Carlos Bustamante
Journal:  Science       Date:  2015-04-23       Impact factor: 47.728

5.  Nonoptimal codon usage influences protein structure in intrinsically disordered regions.

Authors:  Mian Zhou; Tao Wang; Jingjing Fu; Guanghua Xiao; Yi Liu
Journal:  Mol Microbiol       Date:  2015-06-25       Impact factor: 3.501

6.  Identical RNA-protein interactions in vivo and in vitro and a scheme of folding the newly synthesized proteins by ribosomes.

Authors:  Debasis Das; Dibyendu Samanta; Salman Hasan; Anindita Das; Arpita Bhattacharya; Santanu Dasgupta; Abhijit Chakrabarti; Pradip Ghorai; Chanchal Das Gupta
Journal:  J Biol Chem       Date:  2012-08-29       Impact factor: 5.157

7.  Ribosome-associated complex and Ssb are required for translational repression induced by polylysine segments within nascent chains.

Authors:  Marco Chiabudini; Charlotte Conz; Friederike Reckmann; Sabine Rospert
Journal:  Mol Cell Biol       Date:  2012-09-24       Impact factor: 4.272

8.  Mechanisms of SecM-mediated stalling in the ribosome.

Authors:  James Gumbart; Eduard Schreiner; Daniel N Wilson; Roland Beckmann; Klaus Schulten
Journal:  Biophys J       Date:  2012-07-17       Impact factor: 4.033

9.  Translation initiation rate determines the impact of ribosome stalling on bacterial protein synthesis.

Authors:  Steven J Hersch; Sara Elgamal; Assaf Katz; Michael Ibba; William Wiley Navarre
Journal:  J Biol Chem       Date:  2014-08-22       Impact factor: 5.157

10.  Ribosome profiling reveals sequence-independent post-initiation pausing as a signature of translation.

Authors:  Yan Han; Xiangwei Gao; Botao Liu; Ji Wan; Xingqian Zhang; Shu-Bing Qian
Journal:  Cell Res       Date:  2014-06-06       Impact factor: 25.617

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