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Literature DB >> 21310970

The amino acid dipeptide: small but still influential after 50 years.

Jan Hermans¹.

Abstract

Entities: Chemical

Mesh：

Substances：
Dipeptides

Year: 2011 PMID： 21310970 PMCID： PMC3044414 DOI： 10.1073/pnas.1019470108

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

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10 in total

1. The penultimate rotamer library.

Authors: S C Lovell; J M Word; J S Richardson; D C Richardson
Journal: Proteins Date: 2000-08-15

2. Comparison of a QM/MM force field and molecular mechanics force fields in simulations of alanine and glycine "dipeptides" (Ace-Ala-Nme and Ace-Gly-Nme) in water in relation to the problem of modeling the unfolded peptide backbone in solution.

Authors: Hao Hu; Marcus Elstner; Jan Hermans
Journal: Proteins Date: 2003-02-15

3. Stereochemistry of polypeptide chain configurations.

Authors: G N RAMACHANDRAN; C RAMAKRISHNAN; V SASISEKHARAN
Journal: J Mol Biol Date: 1963-07 Impact factor: 5.469

Review 4. The mechanism of alpha-helix formation by peptides.

Authors: J M Scholtz; R L Baldwin
Journal: Annu Rev Biophys Biomol Struct Date: 1992

5. Populations of the three major backbone conformations in 19 amino acid dipeptides.

Authors: Joze Grdadolnik; Vlasta Mohacek-Grosev; Robert L Baldwin; Franc Avbelj
Journal: Proc Natl Acad Sci U S A Date: 2011-01-04 Impact factor: 11.205

6. Atomic-level characterization of the structural dynamics of proteins.

Authors: David E Shaw; Paul Maragakis; Kresten Lindorff-Larsen; Stefano Piana; Ron O Dror; Michael P Eastwood; Joseph A Bank; John M Jumper; John K Salmon; Yibing Shan; Willy Wriggers
Journal: Science Date: 2010-10-15 Impact factor: 47.728

7. On the conformation of denatured proteins.

Authors: J Hermans; G Acampora
Journal: Biochemistry Date: 1969-01 Impact factor: 3.162

Review 8. Molten globule and protein folding.

Authors: O B Ptitsyn
Journal: Adv Protein Chem Date: 1995

9. Microsecond simulations of the folding/unfolding thermodynamics of the Trp-cage miniprotein.

Authors: Ryan Day; Dietmar Paschek; Angel E Garcia
Journal: Proteins Date: 2010-06

Review 10. Intrinsic disorder and functional proteomics.

Authors: Predrag Radivojac; Lilia M Iakoucheva; Christopher J Oldfield; Zoran Obradovic; Vladimir N Uversky; A Keith Dunker
Journal: Biophys J Date: 2006-12-08 Impact factor: 4.033

10 in total

6 in total

1. Distribution of dipeptides in different protein structural classes: an effort to find new similarities.

Authors: Mahin Ghadimi; Emran Heshmati; Khosrow Khalifeh
Journal: Eur Biophys J Date: 2017-06-13 Impact factor: 1.733

2. Roadmaps through free energy landscapes calculated using the multi-dimensional vFEP approach.

Authors: Tai-Sung Lee; Brian K Radak; Ming Huang; Kin-Yiu Wong; Darrin M York
Journal: J Chem Theory Comput Date: 2014-01-14 Impact factor: 6.006

3. Physics-based potentials for the coupling between backbone- and side-chain-local conformational states in the UNited RESidue (UNRES) force field for protein simulations.

Authors: Adam K Sieradzan; Paweł Krupa; Harold A Scheraga; Adam Liwo; Cezary Czaplewski
Journal: J Chem Theory Comput Date: 2015-02-10 Impact factor: 6.006