Literature DB >> 21300900

Biogenesis of the pore architecture of a voltage-gated potassium channel.

Christine Gajewski1, Alper Dagcan, Benoit Roux, Carol Deutsch.   

Abstract

The pore domain of voltage-gated potassium (Kv) channels consists of transmembrane helices S5 and S6, the turret, the pore helix, the selectivity filter, and the loop preceding S6, with a tertiary reentrant structure between S5 and S6. Using biogenic intermediates, mass tagging (pegylation), and a molecular tape measure, we explored the possibility that the first stages of pore formation occur prior to oligomerization of the transmembrane core. Pegylation of introduced cysteines shows that the pore helix, but not the turret, forms a compact secondary structure in the terminal 20 Å of the ribosomal tunnel. We assessed the tertiary fold of the pore loop in monomeric constructs by determining the relative accessibilities of select cysteines using the kinetics of pegylation. Turret residues are accessible at the extracellular surface. In contrast, pore helix residues are less accessible. All-atom molecular dynamics simulations of a single Kv monomer in a solvated lipid membrane indicate that secondary and tertiary folds are stable over 650 ns. These results are consistent with acquisition of a tertiary reentrant pore architecture at the monomer stage of Kv biogenesis and begin to define a plausible sequence of folding events in the formation of Kv channels.

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Year:  2011        PMID: 21300900      PMCID: PMC3044366          DOI: 10.1073/pnas.1017097108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

2.  Structure acquisition of the T1 domain of Kv1.3 during biogenesis.

Authors:  Andrey Kosolapov; Liwei Tu; Jing Wang; Carol Deutsch
Journal:  Neuron       Date:  2004-10-14       Impact factor: 17.173

Review 3.  Experimentally determined hydrophobicity scale for proteins at membrane interfaces.

Authors:  W C Wimley; S H White
Journal:  Nat Struct Biol       Date:  1996-10

4.  The structure of the potassium channel: molecular basis of K+ conduction and selectivity.

Authors:  D A Doyle; J Morais Cabral; R A Pfuetzner; A Kuo; J M Gulbis; S L Cohen; B T Chait; R MacKinnon
Journal:  Science       Date:  1998-04-03       Impact factor: 47.728

5.  Voltage-gated K+ channels contain multiple intersubunit association sites.

Authors:  L Tu; V Santarelli; Z Sheng; W Skach; D Pain; C Deutsch
Journal:  J Biol Chem       Date:  1996-08-02       Impact factor: 5.157

6.  Pegylation: a method for assessing topological accessibilities in Kv1.3.

Authors:  J Lu; C Deutsch
Journal:  Biochemistry       Date:  2001-11-06       Impact factor: 3.162

7.  Dynamic rearrangement of the outer mouth of a K+ channel during gating.

Authors:  Y Liu; M E Jurman; G Yellen
Journal:  Neuron       Date:  1996-04       Impact factor: 17.173

8.  Membrane partitioning: distinguishing bilayer effects from the hydrophobic effect.

Authors:  W C Wimley; S H White
Journal:  Biochemistry       Date:  1993-06-29       Impact factor: 3.162

9.  A folding zone in the ribosomal exit tunnel for Kv1.3 helix formation.

Authors:  Li Wei Tu; Carol Deutsch
Journal:  J Mol Biol       Date:  2010-01-11       Impact factor: 5.469

10.  Missense mutation in the pore region of HERG causes familial long QT syndrome.

Authors:  D W Benson; C A MacRae; M R Vesely; E P Walsh; J G Seidman; C E Seidman; C A Satler
Journal:  Circulation       Date:  1996-05-15       Impact factor: 29.690

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  15 in total

1.  Kinetic analysis of ribosome-bound fluorescent proteins reveals an early, stable, cotranslational folding intermediate.

Authors:  Devaki A Kelkar; Amardeep Khushoo; Zhongying Yang; William R Skach
Journal:  J Biol Chem       Date:  2011-11-28       Impact factor: 5.157

2.  The endosomal trafficking factors CORVET and ESCRT suppress plasma membrane residence of the renal outer medullary potassium channel (ROMK).

Authors:  Timothy D Mackie; Bo-Young Kim; Arohan R Subramanya; Daniel J Bain; Allyson F O'Donnell; Paul A Welling; Jeffrey L Brodsky
Journal:  J Biol Chem       Date:  2018-01-08       Impact factor: 5.157

Review 3.  Bacterial voltage-gated sodium channels (BacNa(V)s) from the soil, sea, and salt lakes enlighten molecular mechanisms of electrical signaling and pharmacology in the brain and heart.

Authors:  Jian Payandeh; Daniel L Minor
Journal:  J Mol Biol       Date:  2014-08-23       Impact factor: 5.469

4.  Importance of lipid-pore loop interface for potassium channel structure and function.

Authors:  Elwin A W van der Cruijsen; Deepak Nand; Markus Weingarth; Alexander Prokofyev; Sönke Hornig; Abhishek Arun Cukkemane; Alexandre M J J Bonvin; Stefan Becker; Raymond E Hulse; Eduardo Perozo; Olaf Pongs; Marc Baldus
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-23       Impact factor: 11.205

5.  Determinants of pore folding in potassium channel biogenesis.

Authors:  Erin Delaney; Pooja Khanna; LiWei Tu; John M Robinson; Carol Deutsch
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-10       Impact factor: 11.205

6.  In vitro folding of KvAP, a voltage-gated K+ channel.

Authors:  Prasanna K Devaraneni; Jordan J Devereaux; Francis I Valiyaveetil
Journal:  Biochemistry       Date:  2011-11-10       Impact factor: 3.162

7.  A Shared Mechanism for the Folding of Voltage-Gated K+ Channels.

Authors:  Sarah K McDonald; Talya S Levitz; Francis I Valiyaveetil
Journal:  Biochemistry       Date:  2019-03-07       Impact factor: 3.162

8.  Molecular coupling in the human ether-a-go-go-related gene-1 (hERG1) K+ channel inactivation pathway.

Authors:  Tania Ferrer; Julio F Cordero-Morales; Marcelo Arias; Eckhard Ficker; David Medovoy; Eduardo Perozo; Martin Tristani-Firouzi
Journal:  J Biol Chem       Date:  2011-09-09       Impact factor: 5.157

9.  Carrier subunit of plasma membrane transporter is required for oxidative folding of its helper subunit.

Authors:  Mònica Rius; Josep Chillarón
Journal:  J Biol Chem       Date:  2012-04-09       Impact factor: 5.157

10.  CALHM1 controls the Ca²⁺-dependent MEK, ERK, RSK and MSK signaling cascade in neurons.

Authors:  Ute Dreses-Werringloer; Valérie Vingtdeux; Haitian Zhao; Pallavi Chandakkar; Peter Davies; Philippe Marambaud
Journal:  J Cell Sci       Date:  2013-01-23       Impact factor: 5.285

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