Literature DB >> 23882077

Importance of lipid-pore loop interface for potassium channel structure and function.

Elwin A W van der Cruijsen1, Deepak Nand, Markus Weingarth, Alexander Prokofyev, Sönke Hornig, Abhishek Arun Cukkemane, Alexandre M J J Bonvin, Stefan Becker, Raymond E Hulse, Eduardo Perozo, Olaf Pongs, Marc Baldus.   

Abstract

Potassium (i.e., K(+)) channels allow for the controlled and selective passage of potassium ions across the plasma membrane via a conserved pore domain. In voltage-gated K(+) channels, gating is the result of the coordinated action of two coupled gates: an activation gate at the intracellular entrance of the pore and an inactivation gate at the selectivity filter. By using solid-state NMR structural studies, in combination with electrophysiological experiments and molecular dynamics simulations, we show that the turret region connecting the outer transmembrane helix (transmembrane helix 1) and the pore helix behind the selectivity filter contributes to K(+) channel inactivation and exhibits a remarkable structural plasticity that correlates to K(+) channel inactivation. The transmembrane helix 1 unwinds when the K(+) channel enters the inactivated state and rewinds during the transition to the closed state. In addition to well-characterized changes at the K(+) ion coordination sites, this process is accompanied by conformational changes within the turret region and the pore helix. Further spectroscopic and computational results show that the same channel domain is critically involved in establishing functional contacts between pore domain and the cellular membrane. Taken together, our results suggest that the interaction between the K(+) channel turret region and the lipid bilayer exerts an important influence on the selective passage of potassium ions via the K(+) channel pore.

Entities:  

Keywords:  ion channel; membrane protein; solid-state NMR spectroscopy

Mesh:

Substances:

Year:  2013        PMID: 23882077      PMCID: PMC3740848          DOI: 10.1073/pnas.1305563110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

1.  The orientation and molecular movement of a k(+) channel voltage-sensing domain.

Authors:  Chris S Gandhi; Eliana Clark; Eli Loots; Arnd Pralle; Ehud Y Isacoff
Journal:  Neuron       Date:  2003-10-30       Impact factor: 17.173

2.  Toxin-induced conformational changes in a potassium channel revealed by solid-state NMR.

Authors:  Adam Lange; Karin Giller; Sönke Hornig; Marie-France Martin-Eauclaire; Olaf Pongs; Stefan Becker; Marc Baldus
Journal:  Nature       Date:  2006-04-13       Impact factor: 49.962

3.  Structural rearrangements of membrane proteins probed by water-edited solid-state NMR spectroscopy.

Authors:  Christian Ader; Robert Schneider; Karsten Seidel; Manuel Etzkorn; Stefan Becker; Marc Baldus
Journal:  J Am Chem Soc       Date:  2009-01-14       Impact factor: 15.419

4.  Biogenesis of the pore architecture of a voltage-gated potassium channel.

Authors:  Christine Gajewski; Alper Dagcan; Benoit Roux; Carol Deutsch
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-07       Impact factor: 11.205

5.  Supramolecular structure of membrane-associated polypeptides by combining solid-state NMR and molecular dynamics simulations.

Authors:  Markus Weingarth; Christian Ader; Adrien S J Melquiond; Deepak Nand; Olaf Pongs; Stefan Becker; Alexandre M J J Bonvin; Marc Baldus
Journal:  Biophys J       Date:  2012-07-03       Impact factor: 4.033

6.  Dynamic rearrangement of the outer mouth of a K+ channel during gating.

Authors:  Y Liu; M E Jurman; G Yellen
Journal:  Neuron       Date:  1996-04       Impact factor: 17.173

7.  Atomic structure of a voltage-dependent K+ channel in a lipid membrane-like environment.

Authors:  Stephen B Long; Xiao Tao; Ernest B Campbell; Roderick MacKinnon
Journal:  Nature       Date:  2007-11-15       Impact factor: 49.962

8.  Electrostatic domino effect in the Shaker K channel turret.

Authors:  Amir Broomand; Fredrik Osterberg; Tara Wardi; Fredrik Elinder
Journal:  Biophys J       Date:  2007-06-01       Impact factor: 4.033

9.  Two separate interfaces between the voltage sensor and pore are required for the function of voltage-dependent K(+) channels.

Authors:  Seok-Yong Lee; Anirban Banerjee; Roderick MacKinnon
Journal:  PLoS Biol       Date:  2009-03-03       Impact factor: 8.029

10.  A quantitative description of KcsA gating I: macroscopic currents.

Authors:  Sudha Chakrapani; Julio F Cordero-Morales; Eduardo Perozo
Journal:  J Gen Physiol       Date:  2007-10-15       Impact factor: 4.086

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  27 in total

Review 1.  How to resolve microsecond current fluctuations in single ion channels: the power of beta distributions.

Authors:  Indra Schroeder
Journal:  Channels (Austin)       Date:  2015       Impact factor: 2.581

2.  Insight into the conformational stability of membrane-embedded BamA using a combined solution and solid-state NMR approach.

Authors:  Tessa Sinnige; Klaartje Houben; Iva Pritisanac; Marie Renault; Rolf Boelens; Marc Baldus
Journal:  J Biomol NMR       Date:  2015-01-08       Impact factor: 2.835

3.  Comparative study of the structure and interaction of the pore helices of the hERG and Kv1.5 potassium channels in model membranes.

Authors:  Maïwenn Beaugrand; Alexandre A Arnold; Steve Bourgault; Philip T F Williamson; Isabelle Marcotte
Journal:  Eur Biophys J       Date:  2017-03-17       Impact factor: 1.733

4.  Probing Conformational Changes during the Gating Cycle of a Potassium Channel in Lipid Bilayers.

Authors:  Elwin A W van der Cruijsen; Alexander V Prokofyev; Olaf Pongs; Marc Baldus
Journal:  Biophys J       Date:  2017-01-10       Impact factor: 4.033

5.  NMR-based structural biology enhanced by dynamic nuclear polarization at high magnetic field.

Authors:  Eline J Koers; Elwin A W van der Cruijsen; Melanie Rosay; Markus Weingarth; Alexander Prokofyev; Claire Sauvée; Olivier Ouari; Johan van der Zwan; Olaf Pongs; Paul Tordo; Werner E Maas; Marc Baldus
Journal:  J Biomol NMR       Date:  2014-10-05       Impact factor: 2.835

6.  Membrane protein structural validation by oriented sample solid-state NMR: diacylglycerol kinase.

Authors:  Dylan T Murray; Conggang Li; F Philip Gao; Huajun Qin; Timothy A Cross
Journal:  Biophys J       Date:  2014-04-15       Impact factor: 4.033

7.  Dynamic Nuclear Polarization Signal Enhancement with High-Affinity Biradical Tags.

Authors:  Rivkah Rogawski; Ivan V Sergeyev; Yongjun Li; M Francesca Ottaviani; Virginia Cornish; Ann E McDermott
Journal:  J Phys Chem B       Date:  2017-02-06       Impact factor: 2.991

8.  Inactivation in the potassium channel KcsA.

Authors:  Yunyao Xu; Ann E McDermott
Journal:  J Struct Biol X       Date:  2019-06-12

9.  Quantitative analysis of the water occupancy around the selectivity filter of a K+ channel in different gating modes.

Authors:  Markus Weingarth; Elwin A W van der Cruijsen; Jared Ostmeyer; Sylke Lievestro; Benoît Roux; Marc Baldus
Journal:  J Am Chem Soc       Date:  2014-01-22       Impact factor: 15.419

10.  Lipid bilayer modules as determinants of K+ channel gating.

Authors:  Ruhma Syeda; Jose S Santos; Mauricio Montal
Journal:  J Biol Chem       Date:  2013-12-20       Impact factor: 5.157

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