Literature DB >> 21296691

Epigenetic control of Agrobacterium T-DNA integration.

Shimpei Magori1, Vitaly Citovsky.   

Abstract

To genetically transform plants, Agrobacterium transfers its T-DNA into the host cell and integrates it into the plant genome, resulting in neoplastic growths. Over the past 2 decades, a great deal has been learned about the molecular mechanism by which Agrobacterium produces T-DNA and transports it into the host nucleus. However, T-DNA integration, which is the limiting, hence, the most critical step of the transformation process, largely remains an enigma. Increasing evidence suggests that Agrobacterium utilizes the host DNA repair machinery to facilitate T-DNA integration. Meanwhile, it is well known that chromatin modifications, including the phosphorylation of histone H2AX, play an important role in DNA repair. Thus, by implication, such epigenetic codes in chromatin may also have a considerable impact on T-DNA integration, although the direct evidence to demonstrate this hypothesis is still lacking. In this review, we summarize the recent advances in our understanding of Agrobacterium T-DNA integration and discuss the potential link between this process and the epigenetic information in the host chromatin. This article is part of a Special Issue entitled: Epigenetic Control of cellular and developmental processes in plants.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21296691      PMCID: PMC3108046          DOI: 10.1016/j.bbagrm.2011.01.007

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  78 in total

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Authors:  Ritu Pandey; Andreas Müller; Carolyn A Napoli; David A Selinger; Craig S Pikaard; Eric J Richards; Judith Bender; David W Mount; Richard A Jorgensen
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

2.  T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites.

Authors:  Véronique Brunaud; Sandrine Balzergue; Bertrand Dubreucq; Sébastien Aubourg; Franck Samson; Stéphanie Chauvin; Nicole Bechtold; Corinne Cruaud; Richard DeRose; Georges Pelletier; Loïc Lepiniec; Michel Caboche; Alain Lecharny
Journal:  EMBO Rep       Date:  2002-11-21       Impact factor: 8.807

3.  The plant VirE2 interacting protein 1. a molecular link between the Agrobacterium T-complex and the host cell chromatin?

Authors:  Abraham Loyter; Joseph Rosenbluh; Nehama Zakai; Jianxiong Li; Stanislav V Kozlovsky; Tzvi Tzfira; Vitaly Citovsky
Journal:  Plant Physiol       Date:  2005-07       Impact factor: 8.340

Review 4.  Recent advances in understanding of the DNA double-strand break repair machinery of plants.

Authors:  Jean-Yves Bleuyard; Maria E Gallego; Charles I White
Journal:  DNA Repair (Amst)       Date:  2005-10-03

5.  The chromatin assembly factor subunit FASCIATA1 is involved in homologous recombination in plants.

Authors:  Angela Kirik; Ales Pecinka; Edelgard Wendeler; Bernd Reiss
Journal:  Plant Cell       Date:  2006-09-15       Impact factor: 11.277

6.  Agrobacterium induces expression of a host F-box protein required for tumorigenicity.

Authors:  Adi Zaltsman; Alexander Krichevsky; Abraham Loyter; Vitaly Citovsky
Journal:  Cell Host Microbe       Date:  2010-03-18       Impact factor: 21.023

7.  Functional genomic analysis of CAF-1 mutants in Arabidopsis thaliana.

Authors:  Nicole Schönrock; Vivien Exner; Aline Probst; Wilhelm Gruissem; Lars Hennig
Journal:  J Biol Chem       Date:  2006-02-01       Impact factor: 5.157

8.  RNAi-mediated gene silencing reveals involvement of Arabidopsis chromatin-related genes in Agrobacterium-mediated root transformation.

Authors:  Yan Ma Crane; Stanton B Gelvin
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-07       Impact factor: 11.205

9.  Genome-wide insertional mutagenesis of Arabidopsis thaliana.

Authors:  José M Alonso; Anna N Stepanova; Thomas J Leisse; Christopher J Kim; Huaming Chen; Paul Shinn; Denise K Stevenson; Justin Zimmerman; Pascual Barajas; Rosa Cheuk; Carmelita Gadrinab; Collen Heller; Albert Jeske; Eric Koesema; Cristina C Meyers; Holly Parker; Lance Prednis; Yasser Ansari; Nathan Choy; Hashim Deen; Michael Geralt; Nisha Hazari; Emily Hom; Meagan Karnes; Celene Mulholland; Ral Ndubaku; Ian Schmidt; Plinio Guzman; Laura Aguilar-Henonin; Markus Schmid; Detlef Weigel; David E Carter; Trudy Marchand; Eddy Risseeuw; Debra Brogden; Albana Zeko; William L Crosby; Charles C Berry; Joseph R Ecker
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

10.  High-frequency modification of plant genes using engineered zinc-finger nucleases.

Authors:  Jeffrey A Townsend; David A Wright; Ronnie J Winfrey; Fengli Fu; Morgan L Maeder; J Keith Joung; Daniel F Voytas
Journal:  Nature       Date:  2009-04-29       Impact factor: 49.962

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  14 in total

Review 1.  Applying horizontal gene transfer phenomena to enhance non-viral gene therapy.

Authors:  Jacob J Elmer; Matthew D Christensen; Kaushal Rege
Journal:  J Control Release       Date:  2013-08-30       Impact factor: 9.776

Review 2.  Epigenetic regulation in plants.

Authors:  Craig S Pikaard; Ortrun Mittelsten Scheid
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-12-01       Impact factor: 10.005

3.  Transformation of rice with large maize genomic DNA fragments containing high content repetitive sequences.

Authors:  Yafei Wang; Haiyang Zeng; Xu Zhou; Fei Huang; Wei Peng; Lin Liu; Wentao Xiong; Xue Shi; Meizhong Luo
Journal:  Plant Cell Rep       Date:  2015-02-21       Impact factor: 4.570

4.  Blocking single-stranded transferred DNA conversion to double-stranded intermediates by overexpression of yeast DNA REPLICATION FACTOR A.

Authors:  Mery Dafny-Yelin; Avner Levy; Raz Dafny; Tzvi Tzfira
Journal:  Plant Physiol       Date:  2014-11-25       Impact factor: 8.340

5.  Whole-genome resequencing using next-generation and Nanopore sequencing for molecular characterization of T-DNA integration in transgenic poplar 741.

Authors:  Xinghao Chen; Yan Dong; Yali Huang; Jianmin Fan; Minsheng Yang; Jun Zhang
Journal:  BMC Genomics       Date:  2021-05-06       Impact factor: 3.969

6.  Increased Agrobacterium-mediated transformation of Saccharomyces cerevisiae after deletion of the yeast ADA2 gene.

Authors:  M R Roushan; S Shao; I Poledri; P J J Hooykaas; G P H van Heusden
Journal:  Lett Appl Microbiol       Date:  2021-11-27       Impact factor: 2.813

7.  Mutations in HISTONE ACETYLTRANSFERASE1 affect sugar response and gene expression in Arabidopsis.

Authors:  Timothy J Heisel; Chun Yao Li; Katia M Grey; Susan I Gibson
Journal:  Front Plant Sci       Date:  2013-07-17       Impact factor: 5.753

Review 8.  Plant responses to Agrobacterium tumefaciens and crown gall development.

Authors:  Jochen Gohlke; Rosalia Deeken
Journal:  Front Plant Sci       Date:  2014-04-23       Impact factor: 5.753

Review 9.  The non-homologous end-joining pathway is involved in stable transformation in rice.

Authors:  Hiroaki Saika; Ayako Nishizawa-Yokoi; Seiichi Toki
Journal:  Front Plant Sci       Date:  2014-10-17       Impact factor: 5.753

Review 10.  Insights into the regenerative property of plant cells and their receptivity to transgenesis: wheat as a research case study.

Authors:  Fabienne Delporte; Jean-Marie Jacquemin; Patrick Masson; Bernard Watillon
Journal:  Plant Signal Behav       Date:  2012-10-16
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