Literature DB >> 21294269

Ultrasensitive detection of low-abundance surface-marker protein using isothermal rolling circle amplification in a microfluidic nanoliter platform.

Tania Konry1, Irina Smolina, Joel M Yarmush, Daniel Irimia, Martin L Yarmush.   

Abstract

With advances in immunology and cancer biology, there is an unmet need for increasingly sensitive systems to monitor the expression of specific cell markers for the development of new diagnostic and therapeutic tools. To address this challenge, a highly sensitive labeling method that translates antigen-antibody recognition processes into DNA detection events that can be greatly amplified via isothermal rolling circle amplification (RCA) is applied. By merging the single-molecule detection power of RCA reactions with microfluidic technology, it is demonstrated that the identification of specific protein markers can be achieved on tumor-cell surfaces in miniaturized nanoliter reaction droplets. Furthermore, this combined approach of signal amplification in a microfluidic format could extend the utility of existing methods by reducing sample and reagent consumption and enhancing the sensitivities and specificities for various applications, including early diagnosis of cancer.
Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2010        PMID: 21294269      PMCID: PMC3110589          DOI: 10.1002/smll.201001620

Source DB:  PubMed          Journal:  Small        ISSN: 1613-6810            Impact factor:   13.281


  19 in total

1.  Detection of low-abundance membrane markers by immunofluorescence--a comparison of alternative high-sensitivity methods and reagents.

Authors:  Christos Mavrangelos; Bernadette Swart; Silvia Nobbs; Ian C Nicholson; Peter J Macardle; Heddy Zola
Journal:  J Immunol Methods       Date:  2004-06       Impact factor: 2.303

2.  Homogeneous amplified single-molecule detection: Characterization of key parameters.

Authors:  Jonas Melin; Jonas Jarvius; Jenny Göransson; Mats Nilsson
Journal:  Anal Biochem       Date:  2007-05-06       Impact factor: 3.365

3.  Synthesis and stretching of rolling circle amplification products in a flow-through system.

Authors:  Edda Reiss; Ralph Hölzel; Frank F Bier
Journal:  Small       Date:  2009-10       Impact factor: 13.281

4.  Identification of tumour-induced changes in endothelial cell surface protein expression: an in vitro model.

Authors:  P W Hewett
Journal:  Int J Biochem Cell Biol       Date:  2001-04       Impact factor: 5.085

5.  Cell surface analysis techniques: What do cell preparation protocols do to cell surface properties?

Authors:  R S Pembrey; K C Marshall; R P Schneider
Journal:  Appl Environ Microbiol       Date:  1999-07       Impact factor: 4.792

6.  High Ep-CAM expression is associated with poor prognosis in node-positive breast cancer.

Authors:  Gilbert Spizzo; Philip Went; Stephan Dirnhofer; Peter Obrist; Ronald Simon; Hanspeter Spichtin; Robert Maurer; Urs Metzger; Brida von Castelberg; Rahel Bart; Shanna Stopatschinskaya; Ossi Robert Köchli; Philip Haas; Friedrich Mross; Markus Zuber; Holger Dietrich; Susanne Bischoff; Martina Mirlacher; Guido Sauter; Guenther Gastl
Journal:  Breast Cancer Res Treat       Date:  2004-08       Impact factor: 4.872

7.  Microsphere-based rolling circle amplification microarray for the detection of DNA and proteins in a single assay.

Authors:  Tania Konry; Ryan B Hayman; David R Walt
Journal:  Anal Chem       Date:  2009-07-15       Impact factor: 6.986

8.  High-throughput quantitative polymerase chain reaction in picoliter droplets.

Authors:  Margaret Macris Kiss; Lori Ortoleva-Donnelly; N Reginald Beer; Jason Warner; Christopher G Bailey; Bill W Colston; Jonathon M Rothberg; Darren R Link; John H Leamon
Journal:  Anal Chem       Date:  2008-12-01       Impact factor: 6.986

9.  Insights into strand displacement and processivity from the crystal structure of the protein-primed DNA polymerase of bacteriophage phi29.

Authors:  Satwik Kamtekar; Andrea J Berman; Jimin Wang; José M Lázaro; Miguel de Vega; Luis Blanco; Margarita Salas; Thomas A Steitz
Journal:  Mol Cell       Date:  2004-11-19       Impact factor: 17.970

10.  Padlock and proximity probes for in situ and array-based analyses: tools for the post-genomic era.

Authors:  Ulf Landegren; Fredrik Dahl; Mats Nilsson; Simon Fredriksson; Johan Banér; Mats Gullberg; Jonas Jarvius; Sigrun Gustafsdottir; Ola Söderberg; Olle Ericsson; Johan Stenberg; Edith Schallmeiner
Journal:  Comp Funct Genomics       Date:  2003
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  20 in total

1.  Solving medical problems with BioMEMS.

Authors:  Erkin Seker; Jong Hwan Sung; Michael L Shuler; Martin L Yarmush
Journal:  IEEE Pulse       Date:  2011-11       Impact factor: 0.924

2.  Detection of single enzymatic events in rare or single cells using microfluidics.

Authors:  Sissel Juul; Yi-Ping Ho; Jørn Koch; Felicie F Andersen; Magnus Stougaard; Kam W Leong; Birgitta R Knudsen
Journal:  ACS Nano       Date:  2011-09-28       Impact factor: 15.881

Review 3.  Toward integrated molecular diagnostic system (i MDx): principles and applications.

Authors:  Seung-Min Park; Andrew F Sabour; Jun Ho Son; Sang Hun Lee; Luke P Lee
Journal:  IEEE Trans Biomed Eng       Date:  2014-05       Impact factor: 4.538

4.  Site-specific DNA-antibody conjugates for specific and sensitive immuno-PCR.

Authors:  Stephanie A Kazane; Devin Sok; Edward H Cho; Maria Loressa Uson; Peter Kuhn; Peter G Schultz; Vaughn V Smider
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-15       Impact factor: 11.205

5.  The Discovery of Rolling Circle Amplification and Rolling Circle Transcription.

Authors:  Michael G Mohsen; Eric T Kool
Journal:  Acc Chem Res       Date:  2016-10-24       Impact factor: 22.384

Review 6.  Micro total analysis systems for cell biology and biochemical assays.

Authors:  Michelle L Kovarik; Philip C Gach; Douglas M Ornoff; Yuli Wang; Joseph Balowski; Lila Farrag; Nancy L Allbritton
Journal:  Anal Chem       Date:  2011-10-21       Impact factor: 6.986

7.  Particles and microfluidics merged: perspectives of highly sensitive diagnostic detection.

Authors:  Tania Konry; Shyam Sundhar Bale; Abhinav Bhushan; Keyue Shen; Erkin Seker; Boris Polyak; Martin Yarmush
Journal:  Mikrochim Acta       Date:  2012-02       Impact factor: 5.833

8.  Isolation and amplification of mRNA within a simple microfluidic lab on a chip.

Authors:  Sarah J Reinholt; Arne Behrent; Cassandra Greene; Ayten Kalfe; Antje J Baeumner
Journal:  Anal Chem       Date:  2013-12-13       Impact factor: 6.986

9.  Photocleavable DNA barcode-antibody conjugates allow sensitive and multiplexed protein analysis in single cells.

Authors:  Sarit S Agasti; Monty Liong; Vanessa M Peterson; Hakho Lee; Ralph Weissleder
Journal:  J Am Chem Soc       Date:  2012-11-02       Impact factor: 15.419

10.  Droplet microfluidics platform for highly sensitive and quantitative detection of malaria-causing Plasmodium parasites based on enzyme activity measurement.

Authors:  Sissel Juul; Christine J F Nielsen; Rodrigo Labouriau; Amit Roy; Cinzia Tesauro; Pia W Jensen; Charlotte Harmsen; Emil L Kristoffersen; Ya-Ling Chiu; Rikke Frøhlich; Paola Fiorani; Janet Cox-Singh; David Tordrup; Jørn Koch; Anne-Lise Bienvenu; Alessandro Desideri; Stephane Picot; Eskild Petersen; Kam W Leong; Yi-Ping Ho; Magnus Stougaard; Birgitta R Knudsen
Journal:  ACS Nano       Date:  2012-11-07       Impact factor: 15.881

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