Literature DB >> 21278855

Alternative mRNA polyadenylation in eukaryotes: an effective regulator of gene expression.

Carol S Lutz1, Alexandra Moreira.   

Abstract

Alternative RNA processing mechanisms, including alternative splicing and alternative polyadenylation, are increasingly recognized as important regulators of gene expression. This article will focus on what has recently been described about alternative polyadenylation in development, differentiation, and disease in higher eukaryotes. We will also describe how the evolving global methodologies for examining the cellular transcriptome, both experimental and bioinformatic, are revealing new details about the complex nature of alternative 3' end formation, as well as interactions with other RNA-mediated and RNA processing mechanisms.

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Year:  2011        PMID: 21278855      PMCID: PMC3029013          DOI: 10.1002/wrna.47

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  71 in total

1.  An mRNA surveillance mechanism that eliminates transcripts lacking termination codons.

Authors:  Pamela A Frischmeyer; Ambro van Hoof; Kathryn O'Donnell; Anthony L Guerrerio; Roy Parker; Harry C Dietz
Journal:  Science       Date:  2002-03-22       Impact factor: 47.728

2.  Splicing factors stimulate polyadenylation via USEs at non-canonical 3' end formation signals.

Authors:  Sven Danckwardt; Isabelle Kaufmann; Marc Gentzel; Konrad U Foerstner; Anne-Susan Gantzert; Niels H Gehring; Gabriele Neu-Yilik; Peer Bork; Walter Keller; Matthias Wilm; Matthias W Hentze; Andreas E Kulozik
Journal:  EMBO J       Date:  2007-04-26       Impact factor: 11.598

3.  Molecular architecture of the human pre-mRNA 3' processing complex.

Authors:  Yongsheng Shi; Dafne Campigli Di Giammartino; Derek Taylor; Ali Sarkeshik; William J Rice; John R Yates; Joachim Frank; James L Manley
Journal:  Mol Cell       Date:  2009-02-13       Impact factor: 17.970

Review 4.  Alternative polyadenylation: a twist on mRNA 3' end formation.

Authors:  Carol S Lutz
Journal:  ACS Chem Biol       Date:  2008-09-26       Impact factor: 5.100

5.  Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites.

Authors:  Rickard Sandberg; Joel R Neilson; Arup Sarma; Phillip A Sharp; Christopher B Burge
Journal:  Science       Date:  2008-06-20       Impact factor: 47.728

6.  The tumor suppressor microRNA let-7 represses the HMGA2 oncogene.

Authors:  Yong Sun Lee; Anindya Dutta
Journal:  Genes Dev       Date:  2007-04-16       Impact factor: 11.361

7.  Developmental distribution of the polyadenylation protein CstF-64 and the variant tauCstF-64 in mouse and rat testis.

Authors:  A Michelle Wallace; Toni L Denison; Ebtesam N Attaya; Clinton C MacDonald
Journal:  Biol Reprod       Date:  2003-12-17       Impact factor: 4.285

Review 8.  A history of poly A sequences: from formation to factors to function.

Authors:  Mary Edmonds
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  2002

9.  Systematic variation in mRNA 3'-processing signals during mouse spermatogenesis.

Authors:  Donglin Liu; J Michael Brockman; Brinda Dass; Lucie N Hutchins; Priyam Singh; John R McCarrey; Clinton C MacDonald; Joel H Graber
Journal:  Nucleic Acids Res       Date:  2006-12-08       Impact factor: 16.971

10.  Alternative polyadenylation of cyclooxygenase-2.

Authors:  Tyra Hall-Pogar; Haibo Zhang; Bin Tian; Carol S Lutz
Journal:  Nucleic Acids Res       Date:  2005-05-04       Impact factor: 16.971

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  25 in total

Review 1.  Ending the message: poly(A) signals then and now.

Authors:  Nick J Proudfoot
Journal:  Genes Dev       Date:  2011-09-01       Impact factor: 11.361

2.  Distinct regulation of alternative polyadenylation and gene expression by nuclear poly(A) polymerases.

Authors:  Weimin Li; Wencheng Li; Rakesh S Laishram; Mainul Hoque; Zhe Ji; Bin Tian; Richard A Anderson
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

3.  Characterization of the human ornithine transcarbamylase 3' untranslated regulatory region.

Authors:  Monica Lopes-Marques; Isabel Pereira-Castro; António Amorim; Luisa Azevedo
Journal:  DNA Cell Biol       Date:  2011-11-04       Impact factor: 3.311

4.  Evidence that a threshold of serine/arginine-rich (SR) proteins recruits CFIm to promote rous sarcoma virus mRNA 3' end formation.

Authors:  Stephen W Hudson; Lisa M McNally; Mark T McNally
Journal:  Virology       Date:  2016-09-04       Impact factor: 3.616

5.  Allele-Specific Reprogramming of Cancer Metabolism by the Long Non-coding RNA CCAT2.

Authors:  Roxana S Redis; Luz E Vela; Weiqin Lu; Juliana Ferreira de Oliveira; Cristina Ivan; Cristian Rodriguez-Aguayo; Douglas Adamoski; Barbara Pasculli; Ayumu Taguchi; Yunyun Chen; Agustin F Fernandez; Luis Valledor; Katrien Van Roosbroeck; Samuel Chang; Maitri Shah; Garrett Kinnebrew; Leng Han; Yaser Atlasi; Lawrence H Cheung; Gilbert Y Huang; Paloma Monroig; Marc S Ramirez; Tina Catela Ivkovic; Long Van; Hui Ling; Roberta Gafà; Sanja Kapitanovic; Giovanni Lanza; James A Bankson; Peng Huang; Stephen Y Lai; Robert C Bast; Michael G Rosenblum; Milan Radovich; Mircea Ivan; Geoffrey Bartholomeusz; Han Liang; Mario F Fraga; William R Widger; Samir Hanash; Ioana Berindan-Neagoe; Gabriel Lopez-Berestein; Andre L B Ambrosio; Sandra M Gomes Dias; George A Calin
Journal:  Mol Cell       Date:  2016-02-04       Impact factor: 17.970

6.  Juxtaposition of two distant, serine-arginine-rich protein-binding elements is required for optimal polyadenylation in Rous sarcoma virus.

Authors:  Stephen W Hudson; Mark T McNally
Journal:  J Virol       Date:  2011-08-17       Impact factor: 5.103

7.  A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails.

Authors:  Jeremy E Wilusz; Courtney K JnBaptiste; Laura Y Lu; Claus-D Kuhn; Leemor Joshua-Tor; Phillip A Sharp
Journal:  Genes Dev       Date:  2012-10-16       Impact factor: 11.361

8.  Cleavage and polyadenylation specificity factor 1 (CPSF1) regulates alternative splicing of interleukin 7 receptor (IL7R) exon 6.

Authors:  Irina Evsyukova; Shelton S Bradrick; Simon G Gregory; Mariano A Garcia-Blanco
Journal:  RNA       Date:  2012-11-14       Impact factor: 4.942

Review 9.  Alternative pre-mRNA splicing in neurons: growing up and extending its reach.

Authors:  Sika Zheng; Douglas L Black
Journal:  Trends Genet       Date:  2013-05-03       Impact factor: 11.639

10.  Polyadenylation site-specific differences in the activity of the neuronal βCstF-64 protein in PC-12 cells.

Authors:  Ganesh S Shankarling; Clinton C MacDonald
Journal:  Gene       Date:  2013-08-12       Impact factor: 3.688

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