Literature DB >> 21247804

The TB Structural Genomics Consortium: a decade of progress.

Nicholas Chim1, Jeff E Habel, Jodie M Johnston, Inna Krieger, Linda Miallau, Ramasamy Sankaranarayanan, Robert P Morse, John Bruning, Stephanie Swanson, Haelee Kim, Chang-Yub Kim, Hongye Li, Esther M Bulloch, Richard J Payne, Alexandra Manos-Turvey, Li-Wei Hung, Edward N Baker, J Shaun Lott, Michael N G James, Thomas C Terwilliger, David S Eisenberg, James C Sacchettini, Celia W Goulding.   

Abstract

The TB Structural Genomics Consortium is a worldwide organization of collaborators whose mission is the comprehensive structural determination and analyses of Mycobacterium tuberculosis proteins to ultimately aid in tuberculosis diagnosis and treatment. Congruent to the overall vision, Consortium members have additionally established an integrated facilities core to streamline M. tuberculosis structural biology and developed bioinformatics resources for data mining. This review aims to share the latest Consortium developments with the TB community, including recent structures of proteins that play significant roles within M. tuberculosis. Atomic resolution details may unravel mechanistic insights and reveal unique and novel protein features, as well as important protein-protein and protein-ligand interactions, which ultimately lead to a better understanding of M. tuberculosis biology and may be exploited for rational, structure-based therapeutics design.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21247804      PMCID: PMC3310434          DOI: 10.1016/j.tube.2010.11.009

Source DB:  PubMed          Journal:  Tuberculosis (Edinb)        ISSN: 1472-9792            Impact factor:   3.131


  152 in total

1.  The transcriptional responses of Mycobacterium tuberculosis to inhibitors of metabolism: novel insights into drug mechanisms of action.

Authors:  Helena I M Boshoff; Timothy G Myers; Brent R Copp; Michael R McNeil; Michael A Wilson; Clifton E Barry
Journal:  J Biol Chem       Date:  2004-07-09       Impact factor: 5.157

2.  Microsomal heme oxygenase. Characterization of the enzyme.

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Journal:  J Biol Chem       Date:  1969-12-10       Impact factor: 5.157

Review 3.  Biosynthesis and metabolism of arginine in bacteria.

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4.  Mini-F plasmid genes that couple host cell division to plasmid proliferation.

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Journal:  Proc Natl Acad Sci U S A       Date:  1983-08       Impact factor: 11.205

5.  Construction of a urease-negative mutant of Proteus mirabilis: analysis of virulence in a mouse model of ascending urinary tract infection.

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Journal:  Infect Immun       Date:  1990-04       Impact factor: 3.441

6.  Possible novel therapy for diabetes with cell-permeable JNK-inhibitory peptide.

Authors:  Hideaki Kaneto; Yoshihisa Nakatani; Takeshi Miyatsuka; Dan Kawamori; Taka-aki Matsuoka; Munehide Matsuhisa; Yoshitaka Kajimoto; Hidenori Ichijo; Yoshimitsu Yamasaki; Masatsugu Hori
Journal:  Nat Med       Date:  2004-09-26       Impact factor: 53.440

7.  Unique type of plasmid maintenance function: postsegregational killing of plasmid-free cells.

Authors:  K Gerdes; P B Rasmussen; S Molin
Journal:  Proc Natl Acad Sci U S A       Date:  1986-05       Impact factor: 11.205

8.  Proteus mirabilis urease: nucleotide sequence determination and comparison with jack bean urease.

Authors:  B D Jones; H L Mobley
Journal:  J Bacteriol       Date:  1989-12       Impact factor: 3.490

9.  Ammonia inhibits phagosome-lysosome fusion in macrophages.

Authors:  A H Gordon; P D Hart; M R Young
Journal:  Nature       Date:  1980-07-03       Impact factor: 49.962

10.  para-aminobenzoate synthesis from chorismate occurs in two steps.

Authors:  B P Nichols; A M Seibold; S Z Doktor
Journal:  J Biol Chem       Date:  1989-05-25       Impact factor: 5.157

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  18 in total

Review 1.  Adenylating enzymes in Mycobacterium tuberculosis as drug targets.

Authors:  Benjamin P Duckworth; Kathryn M Nelson; Courtney C Aldrich
Journal:  Curr Top Med Chem       Date:  2012       Impact factor: 3.295

2.  Crystallization and preliminary X-ray characterization of the glpX-encoded class II fructose-1,6-bisphosphatase from Mycobacterium tuberculosis.

Authors:  Hiten J Gutka; Scott G Franzblau; Farahnaz Movahedzadeh; Cele Abad-Zapatero
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-05-26

3.  Increasing the structural coverage of tuberculosis drug targets.

Authors:  Loren Baugh; Isabelle Phan; Darren W Begley; Matthew C Clifton; Brianna Armour; David M Dranow; Brandy M Taylor; Marvin M Muruthi; Jan Abendroth; James W Fairman; David Fox; Shellie H Dieterich; Bart L Staker; Anna S Gardberg; Ryan Choi; Stephen N Hewitt; Alberto J Napuli; Janette Myers; Lynn K Barrett; Yang Zhang; Micah Ferrell; Elizabeth Mundt; Katie Thompkins; Ngoc Tran; Sally Lyons-Abbott; Ariel Abramov; Aarthi Sekar; Dmitri Serbzhinskiy; Don Lorimer; Garry W Buchko; Robin Stacy; Lance J Stewart; Thomas E Edwards; Wesley C Van Voorhis; Peter J Myler
Journal:  Tuberculosis (Edinb)       Date:  2014-12-19       Impact factor: 3.131

Review 4.  The impact of structural genomics: the first quindecennial.

Authors:  Marek Grabowski; Ewa Niedzialkowska; Matthew D Zimmerman; Wladek Minor
Journal:  J Struct Funct Genomics       Date:  2016-03-02

5.  A new drug for an old bug.

Authors:  Peter J Myler; Robin Stacy
Journal:  Chem Biol       Date:  2012-12-21

6.  Driving the Way to Tuberculosis Elimination: The Essential Role of Fundamental Research.

Authors:  Christian Lienhardt; Alison M Kraigsley; Christine F Sizemore
Journal:  Clin Infect Dis       Date:  2016-06-05       Impact factor: 9.079

7.  Metabolic bifunctionality of Rv0812 couples folate and peptidoglycan biosynthesis in Mycobacterium tuberculosis.

Authors:  Katherine A Black; Lijun Duan; Lungelo Mandyoli; Bruna P Selbach; Weizhen Xu; Sabine Ehrt; James C Sacchettini; Kyu Y Rhee
Journal:  J Exp Med       Date:  2021-05-05       Impact factor: 17.579

8.  Text mining improves prediction of protein functional sites.

Authors:  Karin M Verspoor; Judith D Cohn; Komandur E Ravikumar; Michael E Wall
Journal:  PLoS One       Date:  2012-02-29       Impact factor: 3.240

9.  The Protein Structure Initiative: achievements and visions for the future.

Authors:  Gaetano T Montelione
Journal:  F1000 Biol Rep       Date:  2012-04-02

10.  Rv2969c, essential for optimal growth in Mycobacterium tuberculosis, is a DsbA-like enzyme that interacts with VKOR-derived peptides and has atypical features of DsbA-like disulfide oxidases.

Authors:  Lakshmanane Premkumar; Begoña Heras; Wilko Duprez; Patricia Walden; Maria Halili; Fabian Kurth; David P Fairlie; Jennifer L Martin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-09-20
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