Literature DB >> 21243078

Landscape of finite-temperature equilibrium behaviour of curvature-inducing proteins on a bilayer membrane explored using a linearized elastic free energy model.

Neeraj J Agrawal1, Joshua Weinstein, Ravi Radhakrishnan.   

Abstract

Using a recently developed multiscale simulation methodology, we describe the equilibrium behaviour of bilayer membranes under the influence of curvature-inducing proteins using a linearized elastic free energy model. In particular, we describe how the cooperativity associated with a multitude of protein-membrane interactions and protein diffusion on a membrane-mediated energy landscape elicits emergent behaviour in the membrane phase. Based on our model simulations, we predict that, depending on the density of membrane-bound proteins and the degree to which a single protein molecule can induce intrinsic mean curvature in the membrane, a range of membrane phase behaviour can be observed including two different modes of vesicle-bud nucleation and repressed membrane undulations. A state diagram as a function of experimentally tunable parameters to classify the underlying states is proposed.

Entities:  

Year:  2008        PMID: 21243078      PMCID: PMC3020790          DOI: 10.1080/00268970802365990

Source DB:  PubMed          Journal:  Mol Phys        ISSN: 0026-8976            Impact factor:   1.962


  38 in total

1.  Imaging coexisting fluid domains in biomembrane models coupling curvature and line tension.

Authors:  Tobias Baumgart; Samuel T Hess; Watt W Webb
Journal:  Nature       Date:  2003-10-23       Impact factor: 49.962

2.  Existence of a hexatic phase in porous media.

Authors:  Ravi Radhakrishnan; Keith E Gubbins; Malgorzata Sliwinska-Bartkowiak
Journal:  Phys Rev Lett       Date:  2002-07-25       Impact factor: 9.161

3.  Membrane elasticity in giant vesicles with fluid phase coexistence.

Authors:  T Baumgart; S Das; W W Webb; J T Jenkins
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

Review 4.  Membrane curvature and mechanisms of dynamic cell membrane remodelling.

Authors:  Harvey T McMahon; Jennifer L Gallop
Journal:  Nature       Date:  2005-12-01       Impact factor: 49.962

5.  Simulations of the dynamics of thermal undulations in lipid bilayers in the tensionless state and under stress.

Authors:  S A Shkulipa; W K den Otter; W J Briels
Journal:  J Chem Phys       Date:  2006-12-21       Impact factor: 3.488

6.  Hybrid simulations of lateral diffusion in fluctuating membranes.

Authors:  Ellen Reister-Gottfried; Stefan M Leitenberger; Udo Seifert
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-01-10

7.  The human erythrocyte membrane skeleton may be an ionic gel. II. Numerical analyses of cell shapes and shape transformations.

Authors:  B T Stokke; A Mikkelsen; A Elgsaeter
Journal:  Eur Biophys J       Date:  1986       Impact factor: 1.733

8.  The kinetics of phase separation in asymmetric membranes.

Authors:  Elizabeth J Wallace; Nigel M Hooper; Peter D Olmsted
Journal:  Biophys J       Date:  2005-03-18       Impact factor: 4.033

9.  Intermonolayer friction and surface shear viscosity of lipid bilayer membranes.

Authors:  W K den Otter; S A Shkulipa
Journal:  Biophys J       Date:  2007-04-27       Impact factor: 4.033

10.  Generation of high curvature membranes mediated by direct endophilin bilayer interactions.

Authors:  K Farsad; N Ringstad; K Takei; S R Floyd; K Rose; P De Camilli
Journal:  J Cell Biol       Date:  2001-10-15       Impact factor: 10.539

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  10 in total

Review 1.  Nanocarrier Hydrodynamics and Binding in Targeted Drug Delivery: Challenges in Numerical Modeling and Experimental Validation.

Authors:  Portonovo S Ayyaswamy; Vladimir Muzykantov; David M Eckmann; Ravi Radhakrishnan
Journal:  J Nanotechnol Eng Med       Date:  2013-07-11

2.  Mesoscale computational studies of membrane bilayer remodeling by curvature-inducing proteins.

Authors:  N Ramakrishnan; P B Sunil Kumar; Ravi Radhakrishnan
Journal:  Phys Rep       Date:  2014-10-01       Impact factor: 25.600

3.  Phenomenology based multiscale models as tools to understand cell membrane and organelle morphologies.

Authors:  N Ramakrishnan; Ravi Radhakrishnan
Journal:  Adv Planar Lipid Bilayers Liposomes       Date:  2015

Review 4.  Systems biology and physical biology of clathrin-mediated endocytosis.

Authors:  Vyas Ramanan; Neeraj J Agrawal; Jin Liu; Sean Engles; Randall Toy; Ravi Radhakrishnan
Journal:  Integr Biol (Camb)       Date:  2011-07-26       Impact factor: 2.192

5.  Minimal mesoscale model for protein-mediated vesiculation in clathrin-dependent endocytosis.

Authors:  Neeraj J Agrawal; Jonathan Nukpezah; Ravi Radhakrishnan
Journal:  PLoS Comput Biol       Date:  2010-09-09       Impact factor: 4.475

6.  Calculation of free energies in fluid membranes subject to heterogeneous curvature fields.

Authors:  Neeraj J Agrawal; Ravi Radhakrishnan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-07-30

7.  Defining the free-energy landscape of curvature-inducing proteins on membrane bilayers.

Authors:  Richard W Tourdot; N Ramakrishnan; Ravi Radhakrishnan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-08-25

8.  Cancer Cell: Linking Oncogenic Signaling to Molecular Structure.

Authors:  Jeremy E Purvis; Andrew J Shih; Yingting Liu; Ravi Radhakrishnan
Journal:  Chapman Hall CRC Math Comput Biol Ser       Date:  2011

9.  Mesoscale simulations of curvature-inducing protein partitioning on lipid bilayer membranes in the presence of mean curvature fields.

Authors:  Jin Liu; Richard Tourdot; Vyas Ramanan; Neeraj J Agrawal; Ravi Radhakrishanan
Journal:  Mol Phys       Date:  2012-03-01       Impact factor: 1.962

10.  Multiscale computational models in physical systems biology of intracellular trafficking.

Authors:  Richard W Tourdot; Ryan P Bradley; Natesan Ramakrishnan; Ravi Radhakrishnan
Journal:  IET Syst Biol       Date:  2014-10       Impact factor: 1.615

  10 in total

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