Literature DB >> 21241695

De novo origin of new genes with introns in Plasmodium vivax.

Zefeng Yang1, Jinling Huang.   

Abstract

The origin of new genes is critical for organisms adapting to new niches. Here, we present evidence for a recent de novo origin of at least 13 protein-coding genes in the genome of Plasmodium vivax. Although recently de novo originated genes have often been suggested to be initially intronless, five of the genes identified in our analysis contain introns in their coding regions. Further investigations revealed that these introns likely evolved from previously intergenic regions together with the coding sequences. We discuss the potential mechanisms for intron formation in these genes and propose that intronization be considered in the formation of de novo originated genes. Published by Elsevier B.V.

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Year:  2011        PMID: 21241695     DOI: 10.1016/j.febslet.2011.01.017

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  28 in total

1.  Evaluating Phylostratigraphic Evidence for Widespread De Novo Gene Birth in Genome Evolution.

Authors:  Bryan A Moyers; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2016-01-11       Impact factor: 16.240

2.  Evolutionary origins of a bioactive peptide buried within Preproalbumin.

Authors:  Alysha G Elliott; Christina Delay; Huanle Liu; Zaiyang Phua; K Johan Rosengren; Aurélie H Benfield; Jose L Panero; Michelle L Colgrave; Achala S Jayasena; Kerry M Dunse; Marilyn A Anderson; Edward E Schilling; Daniel Ortiz-Barrientos; David J Craik; Joshua S Mylne
Journal:  Plant Cell       Date:  2014-03-28       Impact factor: 11.277

3.  Reverse transcriptase and intron number evolution.

Authors:  Kemin Zhou; Alan Kuo; Igor V Grigoriev
Journal:  Stem Cell Investig       Date:  2014-09-28

Review 4.  Evolution of new functions de novo and from preexisting genes.

Authors:  Dan I Andersson; Jon Jerlström-Hultqvist; Joakim Näsvall
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-06-01       Impact factor: 10.005

Review 5.  New gene evolution: little did we know.

Authors:  Manyuan Long; Nicholas W VanKuren; Sidi Chen; Maria D Vibranovski
Journal:  Annu Rev Genet       Date:  2013-09-13       Impact factor: 16.830

6.  A Molecular Portrait of De Novo Genes in Yeasts.

Authors:  Nikolaos Vakirlis; Alex S Hebert; Dana A Opulente; Guillaume Achaz; Chris Todd Hittinger; Gilles Fischer; Joshua J Coon; Ingrid Lafontaine
Journal:  Mol Biol Evol       Date:  2018-03-01       Impact factor: 16.240

7.  Bidirectional promoters as important drivers for the emergence of species-specific transcripts.

Authors:  Valer Gotea; Hanna M Petrykowska; Laura Elnitski
Journal:  PLoS One       Date:  2013-02-27       Impact factor: 3.240

Review 8.  Identifying the mechanisms of intron gain: progress and trends.

Authors:  Paul Yenerall; Leming Zhou
Journal:  Biol Direct       Date:  2012-09-10       Impact factor: 4.540

9.  De novo origin of protein-coding genes in murine rodents.

Authors:  Daniel N Murphy; Aoife McLysaght
Journal:  PLoS One       Date:  2012-11-21       Impact factor: 3.240

10.  Evolution of cis-regulatory elements in yeast de novo and duplicated new genes.

Authors:  Zing Tsung-Yeh Tsai; Huai-Kuang Tsai; Jen-Hao Cheng; Chih-Hsu Lin; Yuan-Fan Tsai; Daryi Wang
Journal:  BMC Genomics       Date:  2012-12-21       Impact factor: 3.969

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