Literature DB >> 21239554

Differentiation of "Candidatus Liberibacter asiaticus" isolates by variable-number tandem-repeat analysis.

Hiroshi Katoh1, Siti Subandiyah, Kenta Tomimura, Mitsuru Okuda, Hong-Ji Su, Toru Iwanami.   

Abstract

Four highly polymorphic simple sequence repeat (SSR) loci were selected and used to differentiate 84 Japanese isolates of "Candidatus Liberibacter asiaticus." The Nei's measure of genetic diversity values for these four SSRs ranged from 0.60 to 0.86. The four SSR loci were also highly polymorphic in four isolates from Taiwan and 12 isolates from Indonesia.

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Year:  2011        PMID： 21239554      PMCID： PMC3067300          DOI： 10.1128/AEM.01571-10

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  20 in total

1.  DNA fingerprinting of Salmonella enterica subsp. enterica serovar typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci.

Authors:  Bjørn-Arne Lindstedt; Even Heir; Elisabet Gjernes; Georg Kapperud
Journal:  J Clin Microbiol       Date:  2003-04       Impact factor: 5.948

2.  Diversity in a variable-number tandem repeat from Yersinia pestis.

Authors:  D M Adair; P L Worsham; K K Hill; A M Klevytska; P J Jackson; A M Friedlander; P Keim
Journal:  J Clin Microbiol       Date:  2000-04       Impact factor: 5.948

3.  Multilocus simple sequence repeat markers for differentiating strains and evaluating genetic diversity of Xylella fastidiosa.

Authors:  Hong Lin; Edwin L Civerolo; Rong Hu; Samuel Barros; Marta Francis; M Andrew Walker
Journal:  Appl Environ Microbiol       Date:  2005-08       Impact factor: 4.792

4.  Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair.

Authors:  M Strand; T A Prolla; R M Liskay; T D Petes
Journal:  Nature       Date:  1993-09-16       Impact factor: 49.962

5.  Genetic diversity of Mycobacterium africanum clinical isolates based on IS6110-restriction fragment length polymorphism analysis, spoligotyping, and variable number of tandem DNA repeats.

Authors:  C Viana-Niero; C Gutierrez; C Sola; I Filliol; F Boulahbal; V Vincent; N Rastogi
Journal:  J Clin Microbiol       Date:  2001-01       Impact factor: 5.948

6.  Differentiation of strains of Xylella fastidiosa by a variable number of tandem repeat analysis.

Authors:  H D Coletta-Filho; M A Takita; A A de Souza; C I Aguilar-Vildoso; M A Machado
Journal:  Appl Environ Microbiol       Date:  2001-09       Impact factor: 4.792

7.  Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility.

Authors:  K Kremer; D van Soolingen; R Frothingham; W H Haas; P W Hermans; C Martín; P Palittapongarnpim; B B Plikaytis; L W Riley; M A Yakrus; J M Musser; J D van Embden
Journal:  J Clin Microbiol       Date:  1999-08       Impact factor: 5.948

8.  Cultivation of 'Candidatus Liberibacter asiaticus', 'Ca. L. africanus', and 'Ca. L. americanus' associated with huanglongbing.

Authors:  A Sechler; E L Schuenzel; P Cooke; S Donnua; N Thaveechai; E Postnikova; A L Stone; W L Schneider; V D Damsteegt; N W Schaad
Journal:  Phytopathology       Date:  2009-05       Impact factor: 4.025

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

10.  Evaluation of genetic diversity among 'Candidatus Liberibacter asiaticus' isolates collected in Southeast Asia.

Authors:  Kenta Tomimura; Shin-Ichi Miyata; Noriko Furuya; Kenji Kubota; Mitsuru Okuda; Siti Subandiyah; Ting-Hsuan Hung; Hong-Ji Su; Toru Iwanami
Journal:  Phytopathology       Date:  2009-09       Impact factor: 4.025
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  10 in total

1.  Characterization of "Candidatus Liberibacter asiaticus" populations by double-locus analyses.

Authors:  X Deng; S Lopes; X Wang; X Sun; D Jones; M Irey; E Civerolo; J Chen
Journal:  Curr Microbiol       Date:  2014-06-10       Impact factor: 2.188

2.  Diversity and plasticity of the intracellular plant pathogen and insect symbiont "Candidatus Liberibacter asiaticus" as revealed by hypervariable prophage genes with intragenic tandem repeats.

Authors:  Lijuan Zhou; Charles A Powell; Michele T Hoffman; Wenbin Li; Guocheng Fan; Bo Liu; Hong Lin; Yongping Duan
Journal:  Appl Environ Microbiol       Date:  2011-07-22       Impact factor: 4.792

3.  Multilocus microsatellite analysis of 'Candidatus Liberibacter asiaticus' associated with citrus Huanglongbing worldwide.

Authors:  Md-Sajedul Islam; Jonathan M Glynn; Yang Bai; Yong-Ping Duan; Helvecio D Coletta-Filho; Gopal Kuruba; Edwin L Civerolo; Hong Lin
Journal:  BMC Microbiol       Date:  2012-03-20       Impact factor: 3.605

4.  Molecular characterization of a mosaic locus in the genome of 'Candidatus Liberibacter asiaticus'.

Authors:  Xuefeng Wang; Changyong Zhou; Xiaoling Deng; Huanan Su; Jianchi Chen
Journal:  BMC Microbiol       Date:  2012-01-26       Impact factor: 3.605

5.  Unique features of a Japanese 'Candidatus Liberibacter asiaticus' strain revealed by whole genome sequencing.

Authors:  Hiroshi Katoh; Shin-Ichi Miyata; Hiromitsu Inoue; Toru Iwanami
Journal:  PLoS One       Date:  2014-09-02       Impact factor: 3.240

6.  A novel multilocus variable number tandem repeat analysis typing scheme for African phylotype III strains of the Ralstonia solanacearum species complex.

Authors:  Santatra Ravelomanantsoa; Isabelle Robène; Frédéric Chiroleu; Fabien Guérin; Stéphane Poussier; Olivier Pruvost; Philippe Prior
Journal:  PeerJ       Date:  2016-05-05       Impact factor: 2.984

7.  SureSelect targeted enrichment, a new cost effective method for the whole genome sequencing of Candidatus Liberibacter asiaticus.

Authors:  Weili Cai; Schyler Nunziata; John Rascoe; Michael J Stulberg
Journal:  Sci Rep       Date:  2019-12-12       Impact factor: 4.379

8.  Changes in Variable Number of Tandem Repeats in 'Candidatus Liberibacter asiaticus' through Insect Transmission.

Authors:  Hiroshi Katoh; Hiromitsu Inoue; Toru Iwanami
Journal:  PLoS One       Date:  2015-09-24       Impact factor: 3.240

9.  Validation of 'variable number of tandem repeat'-based approach for examination of 'Candidatus Liberibacter asiaticus' diversity and its applications for the analysis of the pathogen populations in the areas of recent introduction.

Authors:  Luis A Matos; Mark E Hilf; Jianchi Chen; Svetlana Y Folimonova
Journal:  PLoS One       Date:  2013-11-05       Impact factor: 3.240

10.  Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151.

Authors:  Mario L Arrieta-Ortiz; Luis M Rodríguez-R; Álvaro L Pérez-Quintero; Lucie Poulin; Ana C Díaz; Nathalia Arias Rojas; Cesar Trujillo; Mariana Restrepo Benavides; Rebecca Bart; Jens Boch; Tristan Boureau; Armelle Darrasse; Perrine David; Thomas Dugé de Bernonville; Paula Fontanilla; Lionel Gagnevin; Fabien Guérin; Marie-Agnès Jacques; Emmanuelle Lauber; Pierre Lefeuvre; Cesar Medina; Edgar Medina; Nathaly Montenegro; Alejandra Muñoz Bodnar; Laurent D Noël; Juan F Ortiz Quiñones; Daniela Osorio; Carolina Pardo; Prabhu B Patil; Stéphane Poussier; Olivier Pruvost; Isabelle Robène-Soustrade; Robert P Ryan; Javier Tabima; Oscar G Urrego Morales; Christian Vernière; Sébastien Carrere; Valérie Verdier; Boris Szurek; Silvia Restrepo; Camilo López; Ralf Koebnik; Adriana Bernal
Journal:  PLoS One       Date:  2013-11-22       Impact factor: 3.240
  10 in total

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