Literature DB >> 16085890

Multilocus simple sequence repeat markers for differentiating strains and evaluating genetic diversity of Xylella fastidiosa.

Hong Lin1, Edwin L Civerolo, Rong Hu, Samuel Barros, Marta Francis, M Andrew Walker.   

Abstract

A genome-wide search was performed to identify simple sequence repeat (SSR) loci among the available sequence databases from four strains of Xylella fastidiosa (strains causing Pierce's disease, citrus variegated chlorosis, almond leaf scorch, and oleander leaf scorch). Thirty-four SSR loci were selected for SSR primer design and were validated in PCR experiments. These multilocus SSR primers, distributed across the X. fastidiosa genome, clearly differentiated and clustered X. fastidiosa strains collected from grape, almond, citrus, and oleander. They are well suited for differentiating strains and studying X. fastidiosa epidemiology and population genetics.

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Year:  2005        PMID： 16085890      PMCID： PMC1183328          DOI： 10.1128/AEM.71.8.4888-4892.2005

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  10 in total

Review 1.  Short-sequence DNA repeats in prokaryotic genomes.

Authors:  A van Belkum; S Scherer; L van Alphen; H Verbrugh
Journal:  Microbiol Mol Biol Rev       Date:  1998-06       Impact factor: 11.056

2.  Tandem repeats finder: a program to analyze DNA sequences.

Authors:  G Benson
Journal:  Nucleic Acids Res       Date:  1999-01-15       Impact factor: 16.971

3.  Genetic diversity of Pierce's disease strains and other pathotypes of Xylella fastidiosa.

Authors:  M Hendson; A H Purcell; D Chen; C Smart; M Guilhabert; B Kirkpatrick
Journal:  Appl Environ Microbiol       Date:  2001-02       Impact factor: 4.792

4.  Simple sequence repeats in Escherichia coli: abundance, distribution, composition, and polymorphism.

Authors:  R Gur-Arie; C J Cohen; Y Eitan; L Shelef; E M Hallerman; Y Kashi
Journal:  Genome Res       Date:  2000-01       Impact factor: 9.043

5.  Differentiation of strains of Xylella fastidiosa by a variable number of tandem repeat analysis.

Authors:  H D Coletta-Filho; M A Takita; A A de Souza; C I Aguilar-Vildoso; M A Machado
Journal:  Appl Environ Microbiol       Date:  2001-09       Impact factor: 4.792

6.  The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis.

Authors:  A J Simpson; F C Reinach; P Arruda; F A Abreu; M Acencio; R Alvarenga; L M Alves; J E Araya; G S Baia; C S Baptista; M H Barros; E D Bonaccorsi; S Bordin; J M Bové; M R Briones; M R Bueno; A A Camargo; L E Camargo; D M Carraro; H Carrer; N B Colauto; C Colombo; F F Costa; M C Costa; C M Costa-Neto; L L Coutinho; M Cristofani; E Dias-Neto; C Docena; H El-Dorry; A P Facincani; A J Ferreira; V C Ferreira; J A Ferro; J S Fraga; S C França; M C Franco; M Frohme; L R Furlan; M Garnier; G H Goldman; M H Goldman; S L Gomes; A Gruber; P L Ho; J D Hoheisel; M L Junqueira; E L Kemper; J P Kitajima; J E Krieger; E E Kuramae; F Laigret; M R Lambais; L C Leite; E G Lemos; M V Lemos; S A Lopes; C R Lopes; J A Machado; M A Machado; A M Madeira; H M Madeira; C L Marino; M V Marques; E A Martins; E M Martins; A Y Matsukuma; C F Menck; E C Miracca; C Y Miyaki; C B Monteriro-Vitorello; D H Moon; M A Nagai; A L Nascimento; L E Netto; A Nhani; F G Nobrega; L R Nunes; M A Oliveira; M C de Oliveira; R C de Oliveira; D A Palmieri; A Paris; B R Peixoto; G A Pereira; H A Pereira; J B Pesquero; R B Quaggio; P G Roberto; V Rodrigues; A J de M Rosa; V E de Rosa; R G de Sá; R V Santelli; H E Sawasaki; A C da Silva; A M da Silva; F R da Silva; W A da Silva; J F da Silveira; M L Silvestri; W J Siqueira; A A de Souza; A P de Souza; M F Terenzi; D Truffi; S M Tsai; M H Tsuhako; H Vallada; M A Van Sluys; S Verjovski-Almeida; A L Vettore; M A Zago; M Zatz; J Meidanis; J C Setubal
Journal:  Nature       Date:  2000-07-13       Impact factor: 49.962

7.  Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa.

Authors:  M A Van Sluys; M C de Oliveira; C B Monteiro-Vitorello; C Y Miyaki; L R Furlan; L E A Camargo; A C R da Silva; D H Moon; M A Takita; E G M Lemos; M A Machado; M I T Ferro; F R da Silva; M H S Goldman; G H Goldman; M V F Lemos; H El-Dorry; S M Tsai; H Carrer; D M Carraro; R C de Oliveira; L R Nunes; W J Siqueira; L L Coutinho; E T Kimura; E S Ferro; R Harakava; E E Kuramae; C L Marino; E Giglioti; I L Abreu; L M C Alves; A M do Amaral; G S Baia; S R Blanco; M S Brito; F S Cannavan; A V Celestino; A F da Cunha; R C Fenille; J A Ferro; E F Formighieri; L T Kishi; S G Leoni; A R Oliveira; V E Rosa; F T Sassaki; J A D Sena; A A de Souza; D Truffi; F Tsukumo; G M Yanai; L G Zaros; E L Civerolo; A J G Simpson; N F Almeida; J C Setubal; J P Kitajima
Journal:  J Bacteriol       Date:  2003-02       Impact factor: 3.490

8.  Fastidious xylem-limited bacterial plant pathogens.

Authors:  A H Purcell; D L Hopkins
Journal:  Annu Rev Phytopathol       Date:  1996       Impact factor: 13.078

9.  Vitis Resistance to Pierce's Disease Is Characterized by Differential Xylella fastidiosa Populations in Stems and Leaves.

Authors:  A F Krivanek; M A Walker
Journal:  Phytopathology       Date:  2005-01       Impact factor: 4.025

10.  Causal Role of Xylella fastidiosa in Oleander Leaf Scorch Disease.

Authors:  A H Purcell; S R Saunders; M Hendson; M E Grebus; M J Henry
Journal:  Phytopathology       Date:  1999-01       Impact factor: 4.025
  10 in total
  13 in total

1.  Differentiation of "Candidatus Liberibacter asiaticus" isolates by variable-number tandem-repeat analysis.

Authors:  Hiroshi Katoh; Siti Subandiyah; Kenta Tomimura; Mitsuru Okuda; Hong-Ji Su; Toru Iwanami
Journal:  Appl Environ Microbiol       Date:  2011-01-14       Impact factor: 4.792

2.  Spatial genetic structure of a vector-borne generalist pathogen.

Authors:  Helvécio D Coletta-Filho; Leonora S Bittleston; Rodrigo P P Almeida
Journal:  Appl Environ Microbiol       Date:  2011-02-11       Impact factor: 4.792

3.  Differentiation of Xylella fastidiosa strains via multilocus sequence analysis of environmentally mediated genes (MLSA-E).

Authors:  Jennifer K Parker; Justin C Havird; Leonardo De La Fuente
Journal:  Appl Environ Microbiol       Date:  2011-12-22       Impact factor: 4.792

4.  Identification and validation of SSR markers for Xanthomonas axonopodis pv. punicae an incitant of bacterial blight of pomegranate.

Authors:  Prakash G Patil; Jyotsana Sharma; Manjunatha Nanjundappa; N V Singh; Abhishek Bohra; Raghavendra Gunnaiah; Shivani M Jamma; Jeer Vinayaka; Vipul R Sangnure; R A Marathe
Journal:  3 Biotech       Date:  2022-06-22       Impact factor: 2.893

5.  Population genomic analysis of a bacterial plant pathogen: novel insight into the origin of Pierce's disease of grapevine in the U.S.

Authors:  Leonard Nunney; Xiaoli Yuan; Robin Bromley; John Hartung; Mauricio Montero-Astúa; Lisela Moreira; Beatriz Ortiz; Richard Stouthamer
Journal:  PLoS One       Date:  2010-11-16       Impact factor: 3.240

6.  Genetic structure and biology of Xylella fastidiosa strains causing disease in citrus and coffee in Brazil.

Authors:  Rodrigo P P Almeida; Fernanda E Nascimento; John Chau; Simone S Prado; Chi-Wei Tsai; Sílvio A Lopes; Joao R S Lopes
Journal:  Appl Environ Microbiol       Date:  2008-04-18       Impact factor: 4.792

7.  Genetic analysis of a novel Xylella fastidiosa subspecies found in the southwestern United States.

Authors:  Jennifer J Randall; Natalie P Goldberg; John D Kemp; Maxim Radionenko; Jason M French; Mary W Olsen; Stephen F Hanson
Journal:  Appl Environ Microbiol       Date:  2009-07-06       Impact factor: 4.792

8.  Mining and validating grape (Vitis L.) ESTs to develop EST-SSR markers for genotyping and mapping.

Authors:  Hong Huang; Jiang Lu; Zhongbo Ren; Wayne Hunter; Scot E Dowd; Phat Dang
Journal:  Mol Breed       Date:  2010-07-15       Impact factor: 2.589

9.  Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa.

Authors:  Harshavardhan Doddapaneni; Jiqiang Yao; Hong Lin; M Andrew Walker; Edwin L Civerolo
Journal:  BMC Genomics       Date:  2006-09-01       Impact factor: 3.969

10.  Comparative genomic characterization of citrus-associated Xylella fastidiosa strains.

Authors:  Vivian S da Silva; Cláudio S Shida; Fabiana B Rodrigues; Diógenes C D Ribeiro; Alessandra A de Souza; Helvécio D Coletta-Filho; Marcos A Machado; Luiz R Nunes; Regina Costa de Oliveira
Journal:  BMC Genomics       Date:  2007-12-21       Impact factor: 3.969
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