Literature DB >> 21224228

'Integrative Physiology 2.0': integration of systems biology into physiology and its application to cardiovascular homeostasis.

Diederik W D Kuster1, Daphne Merkus, Jolanda van der Velden, Adrie J M Verhoeven, Dirk J Duncker.   

Abstract

Since the completion of the Human Genome Project and the advent of the large scaled unbiased '-omics' techniques, the field of systems biology has emerged. Systems biology aims to move away from the traditional reductionist molecular approach, which focused on understanding the role of single genes or proteins, towards a more holistic approach by studying networks and interactions between individual components of networks. From a conceptual standpoint, systems biology elicits a 'back to the future' experience for any integrative physiologist. However, many of the new techniques and modalities employed by systems biologists yield tremendous potential for integrative physiologists to expand their tool arsenal to (quantitatively) study complex biological processes, such as cardiac remodelling and heart failure, in a truly holistic fashion. We therefore advocate that systems biology should not become/stay a separate discipline with '-omics' as its playing field, but should be integrated into physiology to create 'Integrative Physiology 2.0'.

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Year:  2011        PMID: 21224228      PMCID: PMC3060584          DOI: 10.1113/jphysiol.2010.201533

Source DB:  PubMed          Journal:  J Physiol        ISSN: 0022-3751            Impact factor:   5.182


  37 in total

1.  Coronary vasoconstrictor influence of angiotensin II is reduced in remodeled myocardium after myocardial infarction.

Authors:  Daphne Merkus; David B Haitsma; Oana Sorop; Frans Boomsma; Vincent J de Beer; Jos M J Lamers; Pieter D Verdouw; Dirk J Duncker
Journal:  Am J Physiol Heart Circ Physiol       Date:  2006-06-23       Impact factor: 4.733

Review 2.  Mechanisms of disease: apoptosis in heart failure--seeing hope in death.

Authors:  Jagat Narula; Nezam Haider; Eloisa Arbustini; Y Chandrashekhar
Journal:  Nat Clin Pract Cardiovasc Med       Date:  2006-12

Review 3.  Systems biology and heart failure: concepts, methods, and potential research applications.

Authors:  Kirkwood F Adams
Journal:  Heart Fail Rev       Date:  2010-07       Impact factor: 4.214

4.  The "modern" view of heart failure: how did we get here?

Authors:  Arnold M Katz
Journal:  Circ Heart Fail       Date:  2008-05       Impact factor: 8.790

5.  Exercise unmasks autonomic dysfunction in swine with a recent myocardial infarction.

Authors:  Dirk J Duncker; David B Haitsma; David A Liem; Pieter D Verdouw; Daphne Merkus
Journal:  Cardiovasc Res       Date:  2005-03-01       Impact factor: 10.787

Review 6.  Regulation of cardiac hypertrophy by intracellular signalling pathways.

Authors:  Joerg Heineke; Jeffery D Molkentin
Journal:  Nat Rev Mol Cell Biol       Date:  2006-08       Impact factor: 94.444

7.  Systems biology and integrative physiological modelling.

Authors:  Robert L Hester; Radu Iliescu; Richard Summers; Thomas G Coleman
Journal:  J Physiol       Date:  2010-12-06       Impact factor: 5.182

8.  Enhanced myofilament responsiveness upon β-adrenergic stimulation in post-infarct remodeled myocardium.

Authors:  Nicky M Boontje; Daphne Merkus; Ruud Zaremba; Amanda Versteilen; Monique C de Waard; Giulia Mearini; Vincent J de Beer; Lucie Carrier; Lori A Walker; Hans W M Niessen; Dobromir Dobrev; Ger J M Stienen; Dirk J Duncker; Jolanda van der Velden
Journal:  J Mol Cell Cardiol       Date:  2010-12-13       Impact factor: 5.000

Review 9.  Myocardial matrix remodeling and the matrix metalloproteinases: influence on cardiac form and function.

Authors:  Francis G Spinale
Journal:  Physiol Rev       Date:  2007-10       Impact factor: 37.312

Review 10.  Exercise hyperaemia in the heart: the search for the dilator mechanism.

Authors:  Dirk J Duncker; Daphne Merkus
Journal:  J Physiol       Date:  2007-06-07       Impact factor: 5.182

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  15 in total

Review 1.  Translational physiology: from molecules to public health.

Authors:  Douglas R Seals
Journal:  J Physiol       Date:  2013-06-03       Impact factor: 5.182

2.  The new biology: a bridge to clinical cardiology.

Authors:  Ge Louridas; Kg Lourida
Journal:  Hippokratia       Date:  2012-04       Impact factor: 0.471

3.  Transcriptome-wide RNA sequencing analysis of rat skeletal muscle feed arteries. II. Impact of exercise training in obesity.

Authors:  Jaume Padilla; Nathan T Jenkins; Pamela K Thorne; Jeffrey S Martin; R Scott Rector; J Wade Davis; M Harold Laughlin
Journal:  J Appl Physiol (1985)       Date:  2014-01-09

Review 4.  Giant sucking sound: can physiology fill the intellectual void left by the reductionists?

Authors:  Michael J Joyner
Journal:  J Appl Physiol (1985)       Date:  2011-06-02

5.  Physiology: alone at the bottom, alone at the top.

Authors:  Michael J Joyner
Journal:  J Physiol       Date:  2011-03-01       Impact factor: 5.182

Review 6.  The Future of Cardiovascular Epidemiology.

Authors:  Ramachandran S Vasan; Emelia J Benjamin
Journal:  Circulation       Date:  2016-06-21       Impact factor: 29.690

7.  Impact of exercise training on endothelial transcriptional profiles in healthy swine: a genome-wide microarray analysis.

Authors:  Jaume Padilla; Grant H Simmons; J Wade Davis; Jeffrey J Whyte; Theodore W Zderic; Marc T Hamilton; Douglas K Bowles; M Harold Laughlin
Journal:  Am J Physiol Heart Circ Physiol       Date:  2011-05-27       Impact factor: 4.733

Review 8.  Animal and in silico models for the study of sarcomeric cardiomyopathies.

Authors:  Dirk J Duncker; Jeroen Bakkers; Bianca J Brundel; Jeff Robbins; Jil C Tardiff; Lucie Carrier
Journal:  Cardiovasc Res       Date:  2015-01-18       Impact factor: 10.787

Review 9.  Analyses of Brucella pathogenesis, host immunity, and vaccine targets using systems biology and bioinformatics.

Authors:  Yongqun He
Journal:  Front Cell Infect Microbiol       Date:  2012-02-01       Impact factor: 5.293

10.  Systems approach to the study of stretch and arrhythmias in right ventricular failure induced in rats by monocrotaline.

Authors:  David Benoist; Rachel Stones; Alan P Benson; Ewan D Fowler; Mark J Drinkhill; Matthew E L Hardy; David A Saint; Olivier Cazorla; Olivier Bernus; Ed White
Journal:  Prog Biophys Mol Biol       Date:  2014-07-09       Impact factor: 3.667

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