Literature DB >> 21221588

Model of cell signal transduction in a three-dimensional domain.

Chris Levy1, David Iron.   

Abstract

Intracellular signalling molecules form pathways inside the cell. These pathways carry a signal to target proteins which results in cellular responses. We consider a spherical cell with two internal compartments containing localized activating enzymes where as deactivating enzymes are spread uniformly through out the cytosol. Two diffusible signalling molecules are activated at the compartments and later deactivated in the cytosol due to deactivating enzymes. The two signalling molecules are a single link in a cascade reaction and form a self regulated dynamical system involving positive and negative feedback. Using matched asymptotic expansions we obtain approximate solutions of the steady state diffusion equation with a linear decay rate. We obtain three-dimensional concentration profiles for the signalling molecules. We also investigate an extension of the above system which has multiple cascade reactions occurring between multiple signalling molecules. Numerically, we show that the speed of the signal is an increasing function of the number of links in the cascade.

Mesh:

Year:  2011        PMID: 21221588     DOI: 10.1007/s00285-010-0394-0

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  12 in total

1.  Spatial gradients of cellular phospho-proteins.

Authors:  G C Brown; B N Kholodenko
Journal:  FEBS Lett       Date:  1999-09-03       Impact factor: 4.124

2.  Mathematical models of protein kinase signal transduction.

Authors:  Reinhart Heinrich; Benjamin G Neel; Tom A Rapoport
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3.  Complexity in biological signaling systems.

Authors:  G Weng; U S Bhalla; R Iyengar
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Review 4.  Four-dimensional organization of protein kinase signaling cascades: the roles of diffusion, endocytosis and molecular motors.

Authors:  Boris N Kholodenko
Journal:  J Exp Biol       Date:  2003-06       Impact factor: 3.312

5.  Release currents of IP(3) receptor channel clusters and concentration profiles.

Authors:  R Thul; M Falcke
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

6.  Modeling dual pathways for the metazoan spindle assembly checkpoint.

Authors:  Richard P Sear; Martin Howard
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-25       Impact factor: 11.205

Review 7.  Cell-signalling dynamics in time and space.

Authors:  Boris N Kholodenko
Journal:  Nat Rev Mol Cell Biol       Date:  2006-03       Impact factor: 94.444

8.  Signaling cascades as cellular devices for spatial computations.

Authors:  Jörg Stelling; Boris N Kholodenko
Journal:  J Math Biol       Date:  2008-02-19       Impact factor: 2.259

9.  Compartmentalization of second messengers in neurons: a mathematical analysis.

Authors:  Wen Chen; Herbert Levine; Wouter-Jan Rappel
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-10-02

10.  The effects of cascade length, kinetics and feedback loops on biological signal transduction dynamics in a simplified cascade model.

Authors:  Zhilin Qu; Thomas M Vondriska
Journal:  Phys Biol       Date:  2009-02-25       Impact factor: 2.583

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  2 in total

1.  Mathematical modelling and computational study of two-dimensional and three-dimensional dynamics of receptor-ligand interactions in signalling response mechanisms.

Authors:  Pilar García-Peñarrubia; Juan J Gálvez; Jesús Gálvez
Journal:  J Math Biol       Date:  2013-07-28       Impact factor: 2.259

2.  Dynamics and stability of a three-dimensional model of cell signal transduction.

Authors:  Chris Levy; David Iron
Journal:  J Math Biol       Date:  2012-10-26       Impact factor: 2.259

  2 in total

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