Literature DB >> 23099523

Dynamics and stability of a three-dimensional model of cell signal transduction.

Chris Levy1, David Iron.   

Abstract

In this paper, we consider a three-dimensional model of cell signal transduction. In this model, the deactivation of signalling proteins occur throughout the cytosol and activation is localized to specific sites in the cell. We use matched asymptotic expansions to construct the dynamic solutions of signalling protein concentrations. The result of the asymptotic analysis is a system of ordinary differential equations. This reduced system is compared to numerical simulations of the full three-dimensional system. As well, we consider the stability of equilibrium solutions. We find that the systems under consideration may undergo sustained oscillations, hysteresis and other complex behaviors. The simulations of the full three-dimensional system agree with simulations of the reduced ordinary differential equations.

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Year:  2012        PMID: 23099523     DOI: 10.1007/s00285-012-0608-8

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  21 in total

1.  Spatial gradients of cellular phospho-proteins.

Authors:  G C Brown; B N Kholodenko
Journal:  FEBS Lett       Date:  1999-09-03       Impact factor: 4.124

2.  Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades.

Authors:  B N Kholodenko
Journal:  Eur J Biochem       Date:  2000-03

Review 3.  Bistability from double phosphorylation in signal transduction. Kinetic and structural requirements.

Authors:  Fernando Ortega; José L Garcés; Francesc Mas; Boris N Kholodenko; Marta Cascante
Journal:  FEBS J       Date:  2006-09       Impact factor: 5.542

Review 4.  Cell-signalling dynamics in time and space.

Authors:  Boris N Kholodenko
Journal:  Nat Rev Mol Cell Biol       Date:  2006-03       Impact factor: 94.444

5.  Signaling cascades as cellular devices for spatial computations.

Authors:  Jörg Stelling; Boris N Kholodenko
Journal:  J Math Biol       Date:  2008-02-19       Impact factor: 2.259

Review 6.  Signalling ballet in space and time.

Authors:  Boris N Kholodenko; John F Hancock; Walter Kolch
Journal:  Nat Rev Mol Cell Biol       Date:  2010-06       Impact factor: 94.444

7.  Ras subcellular localization defines extracellular signal-regulated kinase 1 and 2 substrate specificity through distinct utilization of scaffold proteins.

Authors:  Berta Casar; Imanol Arozarena; Victoria Sanz-Moreno; Adán Pinto; Lorena Agudo-Ibáñez; Richard Marais; Robert E Lewis; María T Berciano; Piero Crespo
Journal:  Mol Cell Biol       Date:  2008-12-29       Impact factor: 4.272

8.  The effects of cascade length, kinetics and feedback loops on biological signal transduction dynamics in a simplified cascade model.

Authors:  Zhilin Qu; Thomas M Vondriska
Journal:  Phys Biol       Date:  2009-02-25       Impact factor: 2.583

9.  Long-range signaling by phosphoprotein waves arising from bistability in protein kinase cascades.

Authors:  Nick I Markevich; Mikhail A Tsyganov; Jan B Hoek; Boris N Kholodenko
Journal:  Mol Syst Biol       Date:  2006-11-14       Impact factor: 11.429

10.  A hidden feedback in signaling cascades is revealed.

Authors:  Alejandra C Ventura; Jacques-A Sepulchre; Sofía D Merajver
Journal:  PLoS Comput Biol       Date:  2008-03-21       Impact factor: 4.475

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  1 in total

1.  Mathematical modelling and computational study of two-dimensional and three-dimensional dynamics of receptor-ligand interactions in signalling response mechanisms.

Authors:  Pilar García-Peñarrubia; Juan J Gálvez; Jesús Gálvez
Journal:  J Math Biol       Date:  2013-07-28       Impact factor: 2.259

  1 in total

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