Literature DB >> 29150502

Hyperthermophilic Carbamate Kinase Stability and Anabolic In Vitro Activity at Alkaline pH.

James E Hennessy1, Melissa J Latter1, Somayeh Fazelinejad1, Amy Philbrook1, Daniel M Bartkus1, Hye-Kyung Kim1, Hideki Onagi1, John G Oakeshott2, Colin Scott2, Apostolos Alissandratos3, Christopher J Easton3.   

Abstract

Carbamate kinases catalyze the conversion of carbamate to carbamoyl phosphate, which is readily transformed into other compounds. Carbamate forms spontaneously from ammonia and carbon dioxide in aqueous solutions, so the kinases have potential for sequestrative utilization of the latter compounds. Here, we compare seven carbamate kinases from mesophilic, thermophilic, and hyperthermophilic sources. In addition to the known enzymes from Enterococcus faecalis and Pyrococcus furiosus, the previously unreported enzymes from the hyperthermophiles Thermococcus sibiricus and Thermococcus barophilus, the thermophiles Fervidobacterium nodosum and Thermosipho melanesiensis, and the mesophile Clostridium tetani were all expressed recombinantly, each in high yield. Only the clostridial enzyme did not show catalysis. In direct assays of carbamate kinase activity, the three hyperthermophilic enzymes display higher specific activities at elevated temperatures, greater stability, and remarkable substrate turnover at alkaline pH (9.9 to 11.4). Thermococcus barophilus and Thermococcus sibiricus carbamate kinases were found to be the most active when the enzymes were tested at 80°C, and maintained activity over broad temperature and pH ranges. These robust thermococcal enzymes therefore represent ideal candidates for biotechnological applications involving aqueous ammonia solutions, since nonbuffered 0.0001 to 1.0 M solutions have pH values of approximately 9.8 to 11.8. As proof of concept, here we also show that carbamoyl phosphate produced by the Thermococcus barophilus kinase is efficiently converted in situ to carbamoyl aspartate by aspartate transcarbamoylase from the same source organism. Using acetyl phosphate to simultaneously recycle the kinase cofactor ATP, at pH 9.9 carbamoyl aspartate is produced in high yield and directly from solutions of ammonia, carbon dioxide, and aspartate.IMPORTANCE Much of the nitrogen in animal wastes and used in fertilizers is commonly lost as ammonia in water runoff, from which it must be removed to prevent downstream pollution and evolution of nitrogenous greenhouse gases. Since carbamate kinases transform ammonia and carbon dioxide to carbamoyl phosphate via carbamate, and carbamoyl phosphate may be converted into other valuable compounds, the kinases provide a route for useful sequestration of ammonia, as well as of carbon dioxide, another greenhouse gas. At the same time, recycling the ammonia in chemical synthesis reduces the need for its energy-intensive production. However, robust catalysts are required for such biotransformations. Here we show that carbamate kinases from hyperthermophilic archaea display remarkable stability and high catalytic activity across broad ranges of pH and temperature, making them promising candidates for biotechnological applications. We also show that carbamoyl phosphate produced by the kinases may be efficiently used to produce carbamoyl aspartate.
Copyright © 2018 American Society for Microbiology.

Entities:  

Keywords:  ammonia; bioremediation; carbamate kinase; carbamoyl phosphate; carbon dioxide; hyperthermophiles

Mesh:

Substances:

Year:  2018        PMID: 29150502      PMCID: PMC5772250          DOI: 10.1128/AEM.02250-17

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  31 in total

1.  Carbamoyl phosphate synthesis: carbamate kinase from Pyrococcus furiosus.

Authors:  M Uriarte; A Marina; S Ramón-Maiques; V Rubio; V Durbecq; C Legrain; N Glansdorff
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

Review 2.  Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability.

Authors:  C Vieille; G J Zeikus
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

3.  Metabolic channeling of carbamoyl phosphate, a thermolabile intermediate: evidence for physical interaction between carbamate kinase-like carbamoyl-phosphate synthetase and ornithine carbamoyltransferase from the hyperthermophile Pyrococcus furiosus.

Authors:  Jan Massant; Patrik Verstreken; Virginie Durbecq; Abdelaziz Kholti; Christianne Legrain; Sonia Beeckmans; Pierre Cornelis; Nicolas Glansdorff
Journal:  J Biol Chem       Date:  2002-03-13       Impact factor: 5.157

4.  DECOMPOSITION OF CARBAMYLPHOSPHATE IN AQUEOUS SOLUTIONS.

Authors:  C M ALLEN; M E JONES
Journal:  Biochemistry       Date:  1964-09       Impact factor: 3.162

5.  PHOSPHORYLATION OF CARBAMATE IN VIVO AND IN VITRO.

Authors:  J YASHPHE; L GORINI
Journal:  J Biol Chem       Date:  1965-04       Impact factor: 5.157

6.  Isolation and nucleotide sequence of the hmp gene that encodes a haemoglobin-like protein in Escherichia coli K-12.

Authors:  S G Vasudevan; W L Armarego; D C Shaw; P E Lilley; N E Dixon; R K Poole
Journal:  Mol Gen Genet       Date:  1991-04

7.  The carbamate kinase-like carbamoyl phosphate synthetase of the hyperthermophilic archaeon Pyrococcus furiosus, a missing link in the evolution of carbamoyl phosphate biosynthesis.

Authors:  V Durbecq; C Legrain; M Roovers; A Piérard; N Glansdorff
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-25       Impact factor: 11.205

8.  Assembly of dimeric variants of coumermycins by tandem action of the four biosynthetic enzymes CouL, CouM, CouP, and NovN.

Authors:  Caren L Freel Meyers; Markus Oberthür; Lutz Heide; Daniel Kahne; Christopher T Walsh
Journal:  Biochemistry       Date:  2004-11-30       Impact factor: 3.162

9.  Proteomic analysis of colony morphology variants of Burkholderia pseudomallei defines a role for the arginine deiminase system in bacterial survival.

Authors:  Narisara Chantratita; Sarunporn Tandhavanant; Chanthiwa Wikraiphat; Lily A Trunck; Drew A Rholl; Aunchalee Thanwisai; Natnaree Saiprom; Direk Limmathurotsakul; Sunee Korbsrisate; Nicholas P J Day; Herbert P Schweizer; Sharon J Peacock
Journal:  J Proteomics       Date:  2011-10-28       Impact factor: 4.044

10.  Structural characterization of the enzymes composing the arginine deiminase pathway in Mycoplasma penetrans.

Authors:  Pablo Gallego; Raquel Planell; Jordi Benach; Enrique Querol; Josep A Perez-Pons; David Reverter
Journal:  PLoS One       Date:  2012-10-17       Impact factor: 3.240

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