Literature DB >> 21216656

Control of metallation and active cofactor assembly in the class Ia and Ib ribonucleotide reductases: diiron or dimanganese?

JoAnne Stubbe1, Joseph A Cotruvo.   

Abstract

Ribonucleotide reductases (RNRs) convert nucleotides to deoxynucleotides in all organisms. Activity of the class Ia and Ib RNRs requires a stable tyrosyl radical (Yⁱ), which can be generated by the reaction of O2 with a diferrous cluster on the β subunit to form active diferric-Yⁱ cofactor. Recent experiments have demonstrated, however, that in vivo the class Ib RNR contains an active dimanganese(III)-Yⁱ cofactor. The similar metal binding sites of the class Ia and Ib RNRs, their ability to bind both MnII and FeII, and the activity of the class Ib RNR with both diferric-Yⁱ and dimanganese(III)-Y cofactors raise the intriguing question of how the cell prevents mismetallation of these essential enzymes. The presence of the class Ib RNR in numerous pathogenic bacteria also highlights the importance of manganese for these organisms' growth and virulence.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21216656      PMCID: PMC3074109          DOI: 10.1016/j.cbpa.2010.12.001

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  48 in total

1.  Essential Bacillus subtilis genes.

Authors:  K Kobayashi; S D Ehrlich; A Albertini; G Amati; K K Andersen; M Arnaud; K Asai; S Ashikaga; S Aymerich; P Bessieres; F Boland; S C Brignell; S Bron; K Bunai; J Chapuis; L C Christiansen; A Danchin; M Débarbouille; E Dervyn; E Deuerling; K Devine; S K Devine; O Dreesen; J Errington; S Fillinger; S J Foster; Y Fujita; A Galizzi; R Gardan; C Eschevins; T Fukushima; K Haga; C R Harwood; M Hecker; D Hosoya; M F Hullo; H Kakeshita; D Karamata; Y Kasahara; F Kawamura; K Koga; P Koski; R Kuwana; D Imamura; M Ishimaru; S Ishikawa; I Ishio; D Le Coq; A Masson; C Mauël; R Meima; R P Mellado; A Moir; S Moriya; E Nagakawa; H Nanamiya; S Nakai; P Nygaard; M Ogura; T Ohanan; M O'Reilly; M O'Rourke; Z Pragai; H M Pooley; G Rapoport; J P Rawlins; L A Rivas; C Rivolta; A Sadaie; Y Sadaie; M Sarvas; T Sato; H H Saxild; E Scanlan; W Schumann; J F M L Seegers; J Sekiguchi; A Sekowska; S J Séror; M Simon; P Stragier; R Studer; H Takamatsu; T Tanaka; M Takeuchi; H B Thomaides; V Vagner; J M van Dijl; K Watabe; A Wipat; H Yamamoto; M Yamamoto; Y Yamamoto; K Yamane; K Yata; K Yoshida; H Yoshikawa; U Zuber; N Ogasawara
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-07       Impact factor: 11.205

2.  Expression analysis of the nrdHIEF operon from Escherichia coli. Conditions that trigger the transcript level in vivo.

Authors:  F Monje-Casas; J Jurado; M J Prieto-Alamo; A Holmgren; C Pueyo
Journal:  J Biol Chem       Date:  2001-02-23       Impact factor: 5.157

3.  Structure of the large subunit of class Ib ribonucleotide reductase from Salmonella typhimurium and its complexes with allosteric effectors.

Authors:  Malin Uppsten; Mathias Färnegårdh; Albert Jordan; Rolf Eliasson; Hans Eklund; Ulla Uhlin
Journal:  J Mol Biol       Date:  2003-06-27       Impact factor: 5.469

Review 4.  Radical initiation in the class I ribonucleotide reductase: long-range proton-coupled electron transfer?

Authors:  JoAnne Stubbe; Daniel G Nocera; Cyril S Yee; Michelle C Y Chang
Journal:  Chem Rev       Date:  2003-06       Impact factor: 60.622

5.  A method for direct cloning of fur-regulated genes: identification of seven new fur-regulated loci in Escherichia coli.

Authors:  N Vassinova; D Kozyrev
Journal:  Microbiology       Date:  2000-12       Impact factor: 2.777

6.  The active form of the R2F protein of class Ib ribonucleotide reductase from Corynebacterium ammoniagenes is a diferric protein.

Authors:  Y Huque; F Fieschi; E Torrents; I Gibert; R Eliasson; P Reichard; M Sahlin; B M Sjoberg
Journal:  J Biol Chem       Date:  2000-08-18       Impact factor: 5.157

Review 7.  Class I ribonucleotide reductases: metallocofactor assembly and repair in vitro and in vivo.

Authors:  Joseph A Cotruvo; Joanne Stubbe
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

8.  Escherichia coli class Ib ribonucleotide reductase contains a dimanganese(III)-tyrosyl radical cofactor in vivo.

Authors:  Joseph A Cotruvo; Joanne Stubbe
Journal:  Biochemistry       Date:  2011-02-15       Impact factor: 3.162

9.  Manganese homeostasis in Bacillus subtilis is regulated by MntR, a bifunctional regulator related to the diphtheria toxin repressor family of proteins.

Authors:  Q Que; J D Helmann
Journal:  Mol Microbiol       Date:  2000-03       Impact factor: 3.501

10.  Outer sphere mutagenesis of Lactobacillus plantarum manganese catalase disrupts the cluster core. Mechanistic implications.

Authors:  Mei M Whittaker; Vladimir V Barynin; Takao Igarashi; James W Whittaker
Journal:  Eur J Biochem       Date:  2003-03
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  16 in total

1.  Investigation of in vivo diferric tyrosyl radical formation in Saccharomyces cerevisiae Rnr2 protein: requirement of Rnr4 and contribution of Grx3/4 AND Dre2 proteins.

Authors:  Yan Zhang; Lili Liu; Xiaorong Wu; Xiuxiang An; JoAnne Stubbe; Mingxia Huang
Journal:  J Biol Chem       Date:  2011-09-19       Impact factor: 5.157

Review 2.  Manganese uptake and streptococcal virulence.

Authors:  Bart A Eijkelkamp; Christopher A McDevitt; Todd Kitten
Journal:  Biometals       Date:  2015-02-05       Impact factor: 2.949

3.  The dimanganese(II) site of Bacillus subtilis class Ib ribonucleotide reductase.

Authors:  Amie K Boal; Joseph A Cotruvo; Joanne Stubbe; Amy C Rosenzweig
Journal:  Biochemistry       Date:  2012-04-25       Impact factor: 3.162

4.  Structural, EPR, and Mössbauer characterization of (μ-alkoxo)(μ-carboxylato)diiron(II,III) model complexes for the active sites of mixed-valent diiron enzymes.

Authors:  Feifei Li; Mrinmoy Chakrabarti; Yanhong Dong; Karl Kauffmann; Emile L Bominaar; Eckard Münck; Lawrence Que
Journal:  Inorg Chem       Date:  2012-02-23       Impact factor: 5.165

5.  In Vitro Reconstitution Reveals a Central Role for the N-Oxygenase PvfB in (Dihydro)pyrazine-N-oxide and Valdiazen Biosynthesis.

Authors:  Gina L Morgan; Bo Li
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-18       Impact factor: 15.336

6.  Bacillus subtilis class Ib ribonucleotide reductase is a dimanganese(III)-tyrosyl radical enzyme.

Authors:  Yan Zhang; Joanne Stubbe
Journal:  Biochemistry       Date:  2011-06-06       Impact factor: 3.162

Review 7.  Manganese homeostasis and utilization in pathogenic bacteria.

Authors:  Lillian J Juttukonda; Eric P Skaar
Journal:  Mol Microbiol       Date:  2015-05-15       Impact factor: 3.501

Review 8.  Ribonucleotide Reductases: Structure, Chemistry, and Metabolism Suggest New Therapeutic Targets.

Authors:  Brandon L Greene; Gyunghoon Kang; Chang Cui; Marina Bennati; Daniel G Nocera; Catherine L Drennan; JoAnne Stubbe
Journal:  Annu Rev Biochem       Date:  2020-06-20       Impact factor: 23.643

Review 9.  Assembly of nonheme Mn/Fe active sites in heterodinuclear metalloproteins.

Authors:  Julia J Griese; Vivek Srinivas; Martin Högbom
Journal:  J Biol Inorg Chem       Date:  2014-04-26       Impact factor: 3.358

10.  Ribonucleotide reductase metallocofactor: assembly, maintenance and inhibition.

Authors:  Caiguo Zhang; Guoqi Liu; Mingxia Huang
Journal:  Front Biol (Beijing)       Date:  2014-01-02
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