Literature DB >> 21211723

Asf1/HIRA facilitate global histone deacetylation and associate with HP1 to promote nucleosome occupancy at heterochromatic loci.

Kenichi Yamane1, Takeshi Mizuguchi, Bowen Cui, Martin Zofall, Ken-ichi Noma, Shiv I S Grewal.   

Abstract

Heterochromatin impacts various nuclear processes by providing a recruiting platform for diverse chromosomal proteins. In fission yeast, HP1 proteins Chp2 and Swi6, which bind to methylated histone H3 lysine 9, associate with SHREC (Snf2/HDAC repressor complex) and Clr6 histone deacetylases (HDACs) involved in heterochromatic silencing. However, heterochromatic silencing machinery is not fully defined. We describe a histone chaperone complex containing Asf1 and HIRA that spreads across silenced domains via its association with Swi6 to enforce transcriptional silencing. Asf1 functions in concert with a Clr6 HDAC complex to silence heterochromatic repeats, and it suppresses antisense transcription by promoting histone deacetylation. Furthermore, we demonstrate that Asf1 and SHREC facilitate nucleosome occupancy at heterochromatic regions but TFIIIC transcription factor binding sites within boundary elements are refractory to these factors. These analyses uncover a role for Asf1 in global histone deacetylation and suggest that HP1-associated histone chaperone promotes nucleosome occupancy to assemble repressive heterochromatin. Copyright Â
© 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21211723      PMCID: PMC3035992          DOI: 10.1016/j.molcel.2010.12.009

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  48 in total

Review 1.  Epigenetic regulation of heterochromatic DNA stability.

Authors:  Jamy C Peng; Gary H Karpen
Journal:  Curr Opin Genet Dev       Date:  2008-03-26       Impact factor: 5.578

2.  Combinatorial, site-specific requirement for heterochromatic silencing factors in the elimination of nucleosome-free regions.

Authors:  Jennifer F Garcia; Phillip A Dumesic; Paul D Hartley; Hana El-Samad; Hiten D Madhani
Journal:  Genes Dev       Date:  2010-07-30       Impact factor: 11.361

3.  Heterochromatin dynamics in mouse cells: interaction between chromatin assembly factor 1 and HP1 proteins.

Authors:  N Murzina; A Verreault; E Laue; B Stillman
Journal:  Mol Cell       Date:  1999-10       Impact factor: 17.970

Review 4.  Chaperoning histones during DNA replication and repair.

Authors:  Monica Ransom; Briana K Dennehey; Jessica K Tyler
Journal:  Cell       Date:  2010-01-22       Impact factor: 41.582

5.  Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae.

Authors:  Alexandra B Lantermann; Tobias Straub; Annelie Strålfors; Guo-Cheng Yuan; Karl Ekwall; Philipp Korber
Journal:  Nat Struct Mol Biol       Date:  2010-01-31       Impact factor: 15.369

6.  Polyanionic stretch-deleted histone chaperone cia1/Asf1p is functional both in vivo and in vitro.

Authors:  Takashi Umehara; Takahiko Chimura; Natsuko Ichikawa; Masami Horikoshi
Journal:  Genes Cells       Date:  2002-01       Impact factor: 1.891

7.  The fission yeast HIRA histone chaperone is required for promoter silencing and the suppression of cryptic antisense transcripts.

Authors:  Holly E Anderson; Josephine Wardle; Senay Vural Korkut; Heather E Murton; Luis López-Maury; Jürg Bähler; Simon K Whitehall
Journal:  Mol Cell Biol       Date:  2009-07-20       Impact factor: 4.272

8.  Distinct factors control histone variant H3.3 localization at specific genomic regions.

Authors:  Aaron D Goldberg; Laura A Banaszynski; Kyung-Min Noh; Peter W Lewis; Simon J Elsaesser; Sonja Stadler; Scott Dewell; Martin Law; Xingyi Guo; Xuan Li; Duancheng Wen; Ariane Chapgier; Russell C DeKelver; Jeffrey C Miller; Ya-Li Lee; Elizabeth A Boydston; Michael C Holmes; Philip D Gregory; John M Greally; Shahin Rafii; Chingwen Yang; Peter J Scambler; David Garrick; Richard J Gibbons; Douglas R Higgs; Ileana M Cristea; Fyodor D Urnov; Deyou Zheng; C David Allis
Journal:  Cell       Date:  2010-03-05       Impact factor: 41.582

9.  Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs.

Authors:  Martin Zofall; Tamás Fischer; Ke Zhang; Ming Zhou; Bowen Cui; Timothy D Veenstra; Shiv I S Grewal
Journal:  Nature       Date:  2009-08-19       Impact factor: 49.962

10.  High-affinity binding of Chp1 chromodomain to K9 methylated histone H3 is required to establish centromeric heterochromatin.

Authors:  Thomas Schalch; Godwin Job; Victoria J Noffsinger; Sreenath Shanker; Canan Kuscu; Leemor Joshua-Tor; Janet F Partridge
Journal:  Mol Cell       Date:  2009-04-10       Impact factor: 17.970

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  50 in total

Review 1.  Linking DNA replication to heterochromatin silencing and epigenetic inheritance.

Authors:  Qing Li; Zhiguo Zhang
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2012-01       Impact factor: 3.848

2.  Schizosaccharomyces pombe Hat1 (Kat1) is associated with Mis16 and is required for telomeric silencing.

Authors:  Kevin Tong; Thomas Keller; Charles S Hoffman; Anthony T Annunziato
Journal:  Eukaryot Cell       Date:  2012-07-06

3.  Integration profiling of gene function with dense maps of transposon integration.

Authors:  Yabin Guo; Jung Min Park; Bowen Cui; Elizabeth Humes; Sunil Gangadharan; Stevephen Hung; Peter C FitzGerald; Kwang-Lae Hoe; Shiv I S Grewal; Nancy L Craig; Henry L Levin
Journal:  Genetics       Date:  2013-07-26       Impact factor: 4.562

4.  Shelterin components mediate genome reorganization in response to replication stress.

Authors:  Takeshi Mizuguchi; Nitika Taneja; Emiko Matsuda; Jon-Matthew Belton; Peter FitzGerald; Job Dekker; Shiv I S Grewal
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-10       Impact factor: 11.205

5.  Shelterin and subtelomeric DNA sequences control nucleosome maintenance and genome stability.

Authors:  Thomas S van Emden; Marta Forn; Ignasi Forné; Zsuzsa Sarkadi; Matías Capella; Lucía Martín Caballero; Sabine Fischer-Burkart; Cornelia Brönner; Marco Simonetta; David Toczyski; Mario Halic; Axel Imhof; Sigurd Braun
Journal:  EMBO Rep       Date:  2018-11-12       Impact factor: 8.807

6.  SNF2 Family Protein Fft3 Suppresses Nucleosome Turnover to Promote Epigenetic Inheritance and Proper Replication.

Authors:  Nitika Taneja; Martin Zofall; Vanivilasini Balachandran; Gobi Thillainadesan; Tomoyasu Sugiyama; David Wheeler; Ming Zhou; Shiv I S Grewal
Journal:  Mol Cell       Date:  2017-03-16       Impact factor: 17.970

7.  Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin.

Authors:  Young Sam Shim; Yoonjung Choi; Keunsoo Kang; Kun Cho; Seunghee Oh; Junwoo Lee; Shiv I S Grewal; Daeyoup Lee
Journal:  EMBO J       Date:  2012-09-18       Impact factor: 11.598

8.  Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription.

Authors:  Bianca P Hennig; Katja Bendrin; Yang Zhou; Tamás Fischer
Journal:  EMBO Rep       Date:  2012-10-02       Impact factor: 8.807

9.  H2B Tyr37 phosphorylation suppresses expression of replication-dependent core histone genes.

Authors:  Kiran Mahajan; Bin Fang; John M Koomen; Nupam P Mahajan
Journal:  Nat Struct Mol Biol       Date:  2012-08-12       Impact factor: 15.369

Review 10.  WEE1 tyrosine kinase, a novel epigenetic modifier.

Authors:  Kiran Mahajan; Nupam P Mahajan
Journal:  Trends Genet       Date:  2013-03-26       Impact factor: 11.639

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