Literature DB >> 21583684

2,2'-[1,1'-(Decane-1,10-diyldioxy-dinitrilo)diethyl-idyne]diphenol.

Xiao-Qiang Wang1, Jun-Feng Tong, Wen-Kui Dong, Shang-Sheng Gong, Jian-Chao Wu.   

Abstract

The salen-type bis-oxime title compound, C(26)H(36)N(2)O(4), lies about a crystallographic inversion centre. Classical intra-molecular O-H⋯N hydrogen bonds generate two S(6) ring motifs. In the crystal structure, pairs of weak inter-molecular C-H⋯O hydrogen bonds link adjacent mol-ecules into an infinite one-dimensional supra-molecular structure.

Entities:  

Year:  2009        PMID: 21583684      PMCID: PMC2977177          DOI: 10.1107/S1600536809029341

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the strong coordination capability and diverse biological activity of Schiff bases, see: Boskovic et al. (2003 ▶); Koizumi et al. (2005 ▶); Oshiob et al. (2005 ▶). For the use of Schiff base derivatives to develop protein and enzyme mimics, see: Santos et al. (2001 ▶). For our studies of synthesis and structure of salen-type bis­oxime compounds obtained by Schiff base reactions, see: Dong et al. (2008a ▶,b ▶, 2009 ▶). For hydrogen bonds, see: Desiraju (1996 ▶).

Experimental

Crystal data

C26H36N2O4 M = 440.57 Monoclinic, a = 13.0031 (16) Å b = 4.6922 (6) Å c = 40.654 (3) Å β = 93.109 (2)° V = 2476.8 (5) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.50 × 0.48 × 0.23 mm

Data collection

Siemens SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.962, T max = 0.982 5830 measured reflections 2124 independent reflections 1209 reflections with I > 2σ(I) R int = 0.076

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.260 S = 1.03 2124 reflections 145 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809029341/ds2001sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809029341/ds2001Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H36N2O4F(000) = 952
Mr = 440.57Dx = 1.181 Mg m3
Monoclinic, C2/cMelting point = 343–344 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 13.0031 (16) ÅCell parameters from 1361 reflections
b = 4.6922 (6) Åθ = 2.5–26.9°
c = 40.654 (3) ŵ = 0.08 mm1
β = 93.109 (2)°T = 298 K
V = 2476.8 (5) Å3Block-like, colorless
Z = 40.50 × 0.48 × 0.23 mm
Siemens SMART 1000 CCD area-detector diffractometer2124 independent reflections
Radiation source: fine-focus sealed tube1209 reflections with I > 2σ(I)
graphiteRint = 0.076
φ and ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→15
Tmin = 0.962, Tmax = 0.982k = −5→5
5830 measured reflectionsl = −44→48
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.260H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.1008P)2 + 5.3906P] where P = (Fo2 + 2Fc2)/3
2124 reflections(Δ/σ)max < 0.001
145 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6948 (2)0.6651 (8)0.60162 (7)0.0693 (9)
O20.5126 (2)0.3324 (9)0.66379 (8)0.0803 (11)
H20.53750.42280.64890.120*
N10.6559 (2)0.5081 (8)0.62776 (8)0.0544 (9)
C10.6125 (3)0.8304 (11)0.58630 (10)0.0620 (12)
H1A0.64130.97230.57210.074*
H1B0.57690.93020.60320.074*
C20.5353 (3)0.6509 (11)0.56611 (10)0.0573 (11)
H2A0.57180.53580.55070.069*
H2B0.50100.52260.58070.069*
C30.4551 (3)0.8281 (11)0.54718 (10)0.0584 (11)
H3A0.48950.94700.53160.070*
H3B0.42270.95360.56250.070*
C40.3718 (3)0.6584 (11)0.52849 (10)0.0596 (11)
H4A0.33770.53840.54400.071*
H4B0.40400.53420.51300.071*
C50.2911 (3)0.8377 (11)0.50978 (10)0.0639 (12)
H5A0.32530.96130.49470.077*
H5B0.25740.95810.52530.077*
C60.8336 (3)0.3275 (14)0.63241 (13)0.0859 (17)
H6A0.83840.17950.61630.129*
H6B0.87860.28420.65130.129*
H6C0.85350.50600.62310.129*
C70.7246 (3)0.3474 (10)0.64272 (9)0.0508 (10)
C80.6903 (3)0.1753 (10)0.67002 (9)0.0510 (10)
C90.5870 (3)0.1717 (11)0.67948 (11)0.0626 (12)
C100.5576 (4)0.0034 (13)0.70503 (12)0.0759 (14)
H100.48950.00570.71090.091*
C110.6286 (4)−0.1700 (13)0.72215 (12)0.0785 (15)
H110.6078−0.28500.73920.094*
C120.7295 (4)−0.1711 (12)0.71384 (12)0.0778 (15)
H120.7773−0.28590.72540.093*
C130.7603 (3)−0.0015 (11)0.68828 (10)0.0639 (12)
H130.8290−0.00410.68300.077*
U11U22U33U12U13U23
O10.0520 (16)0.081 (2)0.0734 (19)−0.0094 (18)−0.0129 (14)0.0220 (19)
O20.0520 (17)0.085 (2)0.104 (2)0.0082 (19)0.0014 (16)0.027 (2)
N10.0458 (17)0.058 (2)0.0580 (19)−0.0004 (19)−0.0087 (15)0.0059 (19)
C10.057 (2)0.064 (3)0.064 (2)−0.010 (3)−0.016 (2)0.019 (2)
C20.051 (2)0.061 (3)0.058 (2)0.004 (2)−0.0098 (18)0.009 (2)
C30.055 (2)0.060 (3)0.060 (2)−0.003 (2)−0.0069 (19)0.017 (2)
C40.053 (2)0.062 (3)0.063 (2)−0.001 (3)−0.0090 (19)0.012 (2)
C50.054 (2)0.071 (3)0.066 (3)0.003 (3)−0.011 (2)0.016 (3)
C60.056 (3)0.100 (4)0.102 (4)0.008 (3)0.001 (3)0.029 (4)
C70.045 (2)0.050 (2)0.056 (2)0.002 (2)−0.0076 (18)−0.007 (2)
C80.051 (2)0.046 (2)0.055 (2)0.012 (2)−0.0067 (18)−0.007 (2)
C90.062 (3)0.056 (3)0.069 (3)0.005 (3)0.000 (2)−0.002 (3)
C100.074 (3)0.075 (3)0.079 (3)0.003 (3)0.010 (3)0.003 (3)
C110.102 (4)0.066 (3)0.067 (3)−0.003 (4)0.008 (3)0.006 (3)
C120.101 (4)0.065 (3)0.066 (3)0.024 (3)−0.010 (3)−0.002 (3)
C130.066 (3)0.062 (3)0.062 (3)0.013 (3)−0.007 (2)−0.005 (3)
O1—N11.409 (4)C5—H5A0.9700
O1—C11.436 (5)C5—H5B0.9700
O2—C91.359 (5)C6—C71.502 (6)
O2—H20.8200C6—H6A0.9600
N1—C71.296 (5)C6—H6B0.9600
C1—C21.517 (6)C6—H6C0.9600
C1—H1A0.9700C7—C81.462 (6)
C1—H1B0.9700C8—C131.413 (5)
C2—C31.511 (5)C8—C91.417 (6)
C2—H2A0.9700C9—C101.376 (7)
C2—H2B0.9700C10—C111.389 (7)
C3—C41.515 (6)C10—H100.9300
C3—H3A0.9700C11—C121.373 (7)
C3—H3B0.9700C11—H110.9300
C4—C51.516 (5)C12—C131.385 (7)
C4—H4A0.9700C12—H120.9300
C4—H4B0.9700C13—H130.9300
C5—C5i1.537 (8)
N1—O1—C1108.7 (3)C4—C5—H5B108.8
C9—O2—H2109.5C5i—C5—H5B108.8
C7—N1—O1113.1 (3)H5A—C5—H5B107.7
O1—C1—C2113.0 (4)C7—C6—H6A109.5
O1—C1—H1A109.0C7—C6—H6B109.5
C2—C1—H1A109.0H6A—C6—H6B109.5
O1—C1—H1B109.0C7—C6—H6C109.5
C2—C1—H1B109.0H6A—C6—H6C109.5
H1A—C1—H1B107.8H6B—C6—H6C109.5
C3—C2—C1112.8 (4)N1—C7—C8116.5 (3)
C3—C2—H2A109.0N1—C7—C6122.8 (4)
C1—C2—H2A109.0C8—C7—C6120.6 (4)
C3—C2—H2B109.0C13—C8—C9116.4 (4)
C1—C2—H2B109.0C13—C8—C7120.6 (4)
H2A—C2—H2B107.8C9—C8—C7123.1 (4)
C2—C3—C4114.9 (4)O2—C9—C10116.9 (4)
C2—C3—H3A108.5O2—C9—C8121.9 (4)
C4—C3—H3A108.5C10—C9—C8121.2 (4)
C2—C3—H3B108.5C9—C10—C11120.7 (5)
C4—C3—H3B108.5C9—C10—H10119.7
H3A—C3—H3B107.5C11—C10—H10119.7
C3—C4—C5114.6 (4)C12—C11—C10119.8 (5)
C3—C4—H4A108.6C12—C11—H11120.1
C5—C4—H4A108.6C10—C11—H11120.1
C3—C4—H4B108.6C11—C12—C13120.1 (5)
C5—C4—H4B108.6C11—C12—H12119.9
H4A—C4—H4B107.6C13—C12—H12119.9
C4—C5—C5i113.9 (5)C12—C13—C8121.8 (4)
C4—C5—H5A108.8C12—C13—H13119.1
C5i—C5—H5A108.8C8—C13—H13119.1
C1—O1—N1—C7178.7 (3)C13—C8—C9—O2−180.0 (4)
N1—O1—C1—C2−72.6 (4)C7—C8—C9—O2−0.7 (7)
O1—C1—C2—C3−174.0 (4)C13—C8—C9—C10−0.2 (7)
C1—C2—C3—C4−175.9 (4)C7—C8—C9—C10179.0 (4)
C2—C3—C4—C5179.5 (4)O2—C9—C10—C11179.3 (5)
C3—C4—C5—C5i178.5 (5)C8—C9—C10—C11−0.5 (8)
O1—N1—C7—C8−179.5 (3)C9—C10—C11—C120.9 (8)
O1—N1—C7—C6−1.4 (6)C10—C11—C12—C13−0.5 (8)
N1—C7—C8—C13−178.6 (4)C11—C12—C13—C8−0.2 (8)
C6—C7—C8—C133.3 (6)C9—C8—C13—C120.6 (6)
N1—C7—C8—C92.2 (6)C7—C8—C13—C12−178.7 (4)
C6—C7—C8—C9−175.9 (5)
D—H···AD—HH···AD···AD—H···A
O2—H2···N10.821.852.568 (5)146
C13—H13···O2ii0.932.663.565 (6)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N10.821.852.568 (5)146
C13—H13⋯O2i0.932.663.565 (6)163

Symmetry code: (i) .

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