Literature DB >> 21203286

1-[2-(3,4-Dichloro-benz-yloxy)-2-phenyl-ethyl]-1H-benzimidazole.

Ozden Ozel Güven, Taner Erdoğan, Simon J Coles, Tuncer Hökelek.   

Abstract

In the mol-ecule of the title compound, C(22)H(18)Cl(2)N(2)O, the planar benzimidazole ring system is oriented with respect to the phenyl and dichloro-benzene rings at dihedral angles of 12.73 (3) and 36.57 (4)°, respectively. The dihedral angle between the dichloro-benzene and phenyl rings is 29.95 (6)°. There are C-H⋯π contacts between the benzimidazole and dichloro-benzene rings, between the benzimidazole and phenyl rings, and between a methylene group and the dichlorobenzene ring.

Entities:  

Year:  2008        PMID: 21203286      PMCID: PMC2962124          DOI: 10.1107/S1600536808022629

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Brammer & Feczko (1988 ▶); Özel Güven et al. (2007a ▶,b ▶). For related literature, see: Song & Shin (1998 ▶); Freer et al. (1986 ▶); Peeters et al. (1996 ▶, 1979a ▶,b ▶); Caira et al. (2004 ▶); Özel Güven et al. (2008a ▶,b ▶).

Experimental

Crystal data

C22H18Cl2N2O M = 397.28 Monoclinic, a = 14.4664 (3) Å b = 7.3995 (2) Å c = 19.1030 (3) Å β = 111.653 (1)° V = 1900.57 (7) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 120 (2) K 0.40 × 0.40 × 0.30 mm

Data collection

Bruker–Nonius Kappa CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.871, T max = 0.901 23210 measured reflections 4358 independent reflections 3480 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.137 S = 1.09 4358 reflections 245 parameters H-atom parameters constrained Δρmax = 1.00 e Å−3 Δρmin = −0.45 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808022629/dn2369sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022629/dn2369Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H18Cl2N2OF000 = 824
Mr = 397.28Dx = 1.388 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4593 reflections
a = 14.4664 (3) Åθ = 2.9–27.5º
b = 7.3995 (2) ŵ = 0.36 mm1
c = 19.1030 (3) ÅT = 120 (2) K
β = 111.6530 (10)ºBlock, colorless
V = 1900.57 (7) Å30.40 × 0.40 × 0.30 mm
Z = 4
Bruker–Nonius Kappa CCD diffractometer4358 independent reflections
Radiation source: fine-focus sealed tube3480 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.044
Detector resolution: 9.091 pixels mm-1θmax = 27.5º
T = 120(2) Kθmin = 3.0º
φ and ω scansh = −18→18
Absorption correction: multi-scan(SADABS; Sheldrick, 2007)k = −9→9
Tmin = 0.871, Tmax = 0.901l = −24→24
23210 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.049  w = 1/[σ2(Fo2) + (0.0784P)2 + 0.7143P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.137(Δ/σ)max < 0.001
S = 1.09Δρmax = 1.00 e Å3
4358 reflectionsΔρmin = −0.45 e Å3
245 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.029 (2)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.08238 (4)1.15550 (8)0.12348 (3)0.03377 (18)
Cl20.27151 (4)1.15173 (8)0.27688 (3)0.03349 (17)
O−0.00599 (9)0.69157 (18)0.39047 (7)0.0198 (3)
N1−0.11880 (11)0.5111 (2)0.25401 (8)0.0181 (3)
N2−0.25862 (12)0.6632 (2)0.18736 (9)0.0248 (4)
C1−0.20915 (13)0.5751 (3)0.24963 (11)0.0226 (4)
H1−0.23380.55770.28770.027*
C2−0.19558 (13)0.6596 (2)0.14714 (10)0.0201 (4)
C3−0.20642 (15)0.7361 (3)0.07797 (10)0.0256 (4)
H3−0.26360.79990.05020.031*
C4−0.13019 (16)0.7146 (3)0.05170 (10)0.0292 (5)
H4−0.13670.76430.00540.035*
C5−0.04303 (16)0.6198 (3)0.09293 (11)0.0268 (4)
H50.00690.60790.07350.032*
C6−0.03008 (14)0.5433 (3)0.16255 (10)0.0207 (4)
H60.02760.48070.19040.025*
C7−0.10738 (13)0.5649 (2)0.18831 (9)0.0177 (4)
C8−0.04415 (13)0.4222 (3)0.31792 (9)0.0189 (4)
H8A−0.01600.32120.30020.023*
H8B−0.07530.37510.35120.023*
C90.03905 (13)0.5531 (2)0.36165 (9)0.0167 (4)
H90.06620.60790.32660.020*
C100.12201 (13)0.4534 (2)0.42245 (9)0.0165 (4)
C110.21552 (13)0.4418 (3)0.41786 (10)0.0194 (4)
H110.22750.49950.37880.023*
C120.29134 (14)0.3446 (3)0.47127 (11)0.0231 (4)
H120.35370.33780.46780.028*
C130.27398 (14)0.2579 (3)0.52970 (10)0.0237 (4)
H130.32460.19240.56530.028*
C140.18091 (15)0.2691 (3)0.53482 (10)0.0246 (4)
H140.16920.21190.57410.029*
C150.10499 (14)0.3660 (3)0.48123 (10)0.0207 (4)
H150.04260.37240.48460.025*
C160.04829 (15)0.8583 (3)0.40680 (10)0.0225 (4)
H16A0.11440.83640.44380.027*
H16B0.01500.94260.42860.027*
C170.05701 (13)0.9422 (2)0.33712 (10)0.0193 (4)
C18−0.02613 (14)0.9540 (2)0.27082 (10)0.0202 (4)
H18−0.08770.91630.27020.024*
C19−0.01811 (14)1.0213 (3)0.20569 (10)0.0221 (4)
H19−0.07391.02700.16140.027*
C200.07358 (15)1.0803 (3)0.20677 (10)0.0237 (4)
C210.15655 (14)1.0755 (3)0.27335 (11)0.0229 (4)
C220.14856 (14)1.0041 (3)0.33816 (10)0.0216 (4)
H220.20440.99770.38240.026*
U11U22U33U12U13U23
Cl10.0443 (3)0.0369 (3)0.0292 (3)0.0115 (2)0.0242 (2)0.0078 (2)
Cl20.0271 (3)0.0344 (3)0.0450 (3)−0.0047 (2)0.0204 (2)−0.0018 (2)
O0.0211 (6)0.0179 (7)0.0222 (6)−0.0002 (5)0.0103 (5)0.0002 (5)
N10.0156 (7)0.0187 (8)0.0181 (7)−0.0008 (6)0.0042 (6)0.0008 (6)
N20.0180 (8)0.0252 (9)0.0280 (8)0.0022 (6)0.0050 (7)−0.0017 (7)
C10.0163 (9)0.0259 (10)0.0250 (9)−0.0021 (7)0.0067 (7)−0.0020 (8)
C20.0170 (9)0.0175 (9)0.0208 (9)0.0003 (7)0.0012 (7)−0.0028 (7)
C30.0264 (10)0.0206 (10)0.0209 (9)0.0028 (8)−0.0017 (7)0.0006 (7)
C40.0390 (12)0.0280 (11)0.0175 (9)−0.0024 (9)0.0069 (8)0.0020 (8)
C50.0321 (11)0.0271 (11)0.0241 (10)−0.0015 (8)0.0138 (8)−0.0030 (8)
C60.0188 (9)0.0189 (9)0.0220 (9)0.0016 (7)0.0048 (7)−0.0032 (7)
C70.0170 (8)0.0163 (9)0.0161 (8)−0.0018 (7)0.0018 (6)−0.0018 (6)
C80.0191 (9)0.0180 (9)0.0165 (8)−0.0013 (7)0.0030 (7)0.0022 (7)
C90.0188 (8)0.0160 (9)0.0151 (8)0.0017 (7)0.0062 (6)0.0007 (6)
C100.0174 (8)0.0161 (9)0.0138 (8)−0.0010 (7)0.0031 (6)−0.0017 (6)
C110.0194 (9)0.0211 (10)0.0160 (8)−0.0012 (7)0.0045 (7)0.0005 (7)
C120.0182 (9)0.0247 (10)0.0241 (9)0.0010 (7)0.0050 (7)−0.0018 (7)
C130.0240 (9)0.0201 (10)0.0207 (9)0.0026 (8)0.0009 (7)0.0004 (7)
C140.0305 (10)0.0237 (10)0.0190 (9)0.0008 (8)0.0084 (7)0.0045 (7)
C150.0201 (9)0.0221 (10)0.0208 (9)0.0007 (7)0.0086 (7)0.0017 (7)
C160.0277 (10)0.0180 (10)0.0204 (9)−0.0024 (7)0.0071 (7)−0.0016 (7)
C170.0223 (9)0.0121 (9)0.0212 (9)−0.0007 (7)0.0055 (7)−0.0018 (7)
C180.0200 (9)0.0151 (9)0.0246 (9)−0.0006 (7)0.0073 (7)−0.0025 (7)
C190.0234 (9)0.0183 (9)0.0221 (9)0.0041 (7)0.0055 (7)−0.0012 (7)
C200.0337 (11)0.0185 (10)0.0245 (9)0.0062 (8)0.0172 (8)0.0002 (7)
C210.0221 (9)0.0183 (10)0.0310 (10)0.0010 (7)0.0128 (8)−0.0031 (8)
C220.0219 (9)0.0167 (9)0.0232 (9)0.0005 (7)0.0046 (7)−0.0023 (7)
Cl1—C201.7340 (19)C9—H90.9800
Cl2—C211.7339 (19)C11—C101.390 (2)
O—C91.429 (2)C11—C121.391 (3)
O—C161.434 (2)C11—H110.9300
N1—C11.363 (2)C12—C131.388 (3)
N1—C71.383 (2)C12—H120.9300
N1—C81.455 (2)C13—H130.9300
N2—C11.313 (3)C14—C131.388 (3)
N2—C21.393 (2)C14—H140.9300
C1—H10.9300C15—C101.394 (2)
C2—C31.392 (3)C15—C141.392 (3)
C2—C71.413 (2)C15—H150.9300
C3—C41.379 (3)C16—H16A0.9700
C3—H30.9300C16—H16B0.9700
C4—H40.9300C17—C161.516 (2)
C5—C41.403 (3)C18—C171.391 (2)
C5—H50.9300C18—H180.9300
C6—C51.393 (3)C19—C181.384 (3)
C6—H60.9300C19—C201.389 (3)
C7—C61.387 (3)C19—H190.9300
C8—H8A0.9700C21—C201.390 (3)
C8—H8B0.9700C22—C171.395 (3)
C9—C81.531 (2)C22—C211.389 (3)
C9—C101.518 (2)C22—H220.9300
C9—O—C16114.20 (14)C15—C10—C9121.13 (15)
C1—N1—C7106.09 (15)C10—C11—C12120.52 (17)
C1—N1—C8127.33 (15)C10—C11—H11119.7
C7—N1—C8126.25 (15)C12—C11—H11119.7
C1—N2—C2103.97 (15)C13—C12—C11120.07 (18)
N2—C1—N1114.69 (17)C13—C12—H12120.0
N2—C1—H1122.7C11—C12—H12120.0
N1—C1—H1122.7C14—C13—C12119.79 (17)
C3—C2—N2130.43 (17)C14—C13—H13120.1
C3—C2—C7119.48 (18)C12—C13—H13120.1
N2—C2—C7110.06 (16)C13—C14—C15120.10 (17)
C4—C3—C2118.26 (18)C13—C14—H14119.9
C4—C3—H3120.9C15—C14—H14119.9
C2—C3—H3120.9C14—C15—C10120.35 (17)
C3—C4—C5121.79 (18)C14—C15—H15119.8
C3—C4—H4119.1C10—C15—H15119.8
C5—C4—H4119.1O—C16—C17112.19 (14)
C6—C5—C4121.03 (19)O—C16—H16A109.2
C6—C5—H5119.5C17—C16—H16A109.2
C4—C5—H5119.5O—C16—H16B109.2
C7—C6—C5116.73 (17)C17—C16—H16B109.2
C7—C6—H6121.6H16A—C16—H16B107.9
C5—C6—H6121.6C18—C17—C22119.34 (17)
N1—C7—C6132.09 (16)C18—C17—C16120.09 (16)
N1—C7—C2105.19 (15)C22—C17—C16120.56 (16)
C6—C7—C2122.71 (17)C19—C18—C17120.66 (17)
N1—C8—C9111.26 (15)C19—C18—H18119.7
N1—C8—H8A109.4C17—C18—H18119.7
C9—C8—H8A109.4C18—C19—C20119.73 (17)
N1—C8—H8B109.4C18—C19—H19120.1
C9—C8—H8B109.4C20—C19—H19120.1
H8A—C8—H8B108.0C19—C20—C21120.17 (17)
O—C9—C10113.44 (13)C19—C20—Cl1118.70 (15)
O—C9—C8106.58 (14)C21—C20—Cl1121.12 (15)
C10—C9—C8110.51 (15)C22—C21—C20119.83 (17)
O—C9—H9108.7C22—C21—Cl2118.88 (14)
C10—C9—H9108.7C20—C21—Cl2121.27 (15)
C8—C9—H9108.7C21—C22—C17120.19 (17)
C11—C10—C15119.17 (16)C21—C22—H22119.9
C11—C10—C9119.64 (15)C17—C22—H22119.9
C16—O—C9—C1081.33 (18)O—C9—C10—C11−125.62 (17)
C16—O—C9—C8−156.82 (14)C8—C9—C10—C11114.75 (18)
C9—O—C16—C1761.95 (19)O—C9—C10—C1557.3 (2)
C2—N2—C1—N1−0.7 (2)C8—C9—C10—C15−62.3 (2)
C1—N2—C2—C3−177.7 (2)C10—C11—C12—C130.1 (3)
C1—N2—C2—C70.3 (2)C12—C11—C10—C15−0.1 (3)
C7—N1—C1—N20.9 (2)C12—C11—C10—C9−177.28 (17)
C8—N1—C1—N2174.54 (17)C11—C12—C13—C14−0.3 (3)
C1—N1—C7—C6178.1 (2)C15—C14—C13—C120.5 (3)
C8—N1—C7—C64.3 (3)C14—C15—C10—C110.3 (3)
C1—N1—C7—C2−0.58 (19)C14—C15—C10—C9177.43 (17)
C8—N1—C7—C2−174.36 (16)C10—C15—C14—C13−0.5 (3)
C1—N1—C8—C9−100.7 (2)C18—C17—C16—O46.3 (2)
C7—N1—C8—C971.8 (2)C22—C17—C16—O−132.13 (18)
N2—C2—C3—C4178.49 (19)C19—C18—C17—C222.0 (3)
C7—C2—C3—C40.6 (3)C19—C18—C17—C16−176.48 (17)
C3—C2—C7—N1178.44 (16)C20—C19—C18—C17−1.0 (3)
N2—C2—C7—N10.2 (2)C18—C19—C20—C21−1.4 (3)
C3—C2—C7—C6−0.4 (3)C18—C19—C20—Cl1177.45 (14)
N2—C2—C7—C6−178.63 (17)C22—C21—C20—C192.8 (3)
C2—C3—C4—C5−0.5 (3)Cl2—C21—C20—C19−178.87 (15)
C6—C5—C4—C30.0 (3)C22—C21—C20—Cl1−176.03 (15)
C7—C6—C5—C40.3 (3)Cl2—C21—C20—Cl12.3 (2)
N1—C7—C6—C5−178.58 (19)C21—C22—C17—C18−0.5 (3)
C2—C7—C6—C5−0.1 (3)C21—C22—C17—C16177.89 (17)
O—C9—C8—N162.89 (17)C17—C22—C21—C20−1.8 (3)
C10—C9—C8—N1−173.43 (14)C17—C22—C21—Cl2179.81 (14)
D—H···AD—HH···AD···AD—H···A
C3—H3···Cg3i0.932.873.583 (2)135
C8—H8A···Cg4ii0.972.713.670 (2)171
C13—H13···Cg2iii0.932.683.474 (2)144
C18—H18···Cg10.932.783.380 (2)124
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯Cg3i0.932.873.583 (2)135
C8—H8ACg4ii0.972.713.670 (2)171
C13—H13⋯Cg2iii0.932.683.474 (2)144
C18—H18⋯Cg10.932.783.380 (2)124

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-[2-(2,6-Dichloro-benz-yloxy)-2-(2-fur-yl)eth-yl]-1H-benzimidazole.

Authors:  Ozden Ozel Güven; Taner Erdoğan; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-09

3.  Synthesis and antimicrobial activity of some novel phenyl and benzimidazole substituted benzyl ethers.

Authors:  Ozden Ozel Güven; Taner Erdoğan; Hakan Göker; Sulhiye Yildiz
Journal:  Bioorg Med Chem Lett       Date:  2007-01-25       Impact factor: 2.823

4.  Preparation and crystal characterization of a polymorph, a monohydrate, and an ethyl acetate solvate of the antifungal fluconazole.

Authors:  Mino R Caira; Khouloud A Alkhamis; Rana M Obaidat
Journal:  J Pharm Sci       Date:  2004-03       Impact factor: 3.534

5.  The antifungal drug clotrimazole.

Authors:  H Song; H S Shin
Journal:  Acta Crystallogr C       Date:  1998-11-15       Impact factor: 1.172

6.  1-[2-(4-Fluoro-benz-yloxy)-2-phenyl-ethyl]-1H-benzimidazole.

Authors:  Ozden Ozel Güven; Taner Erdoğan; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-16
  6 in total
  7 in total

1.  1-[2-(2,4-Dichloro-benz-yloxy)-2-phenyl-ethyl]-1H-1,2,4-triazole.

Authors:  Ozden Ozel Güven; Hakan Tahtacı; M Nawaz Tahir; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-29

2.  1-(1H-Benzimidazol-1-ylmeth-yl)-3-[2-(di-isopropyl-amino)eth-yl]-1H-benzimid-azolium bromide 0.25-hydrate.

Authors:  Hakan Arslan; Don Vanderveer; Serpil Demir; Ismail Ozdemir; Bekir Cetinkaya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-06

3.  1-[2-(2,4-Dichloro-benz-yloxy)-2-(2-fur-yl)eth-yl]-1H-1,2,4-triazole.

Authors:  Ozden Ozel Güven; Hakan Tahtacı; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

4.  1-[2-(4-Bromo-benz-yloxy)-2-phenyl-ethyl]-1H-1,2,4-triazole.

Authors:  Ozden Ozel Güven; Hakan Tahtacı; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13

5.  1-[2-(2,6-Dichloro-benz-yloxy)-2-(2-fur-yl)eth-yl]-1H-1,2,4-triazole.

Authors:  Ozden Ozel Güven; Hakan Tahtacı; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12

6.  1-{2-Benz-yloxy-2-[4-(morpholin-4-yl)phen-yl]eth-yl}-1H-benzimidazole.

Authors:  Ozden Ozel Güven; Seval Capanlar; Philip D F Adler; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-22

7.  1-{2-(4-Chloro-benz-yloxy)-2-[4-(mor-pho-lin-4-yl)phen-yl]eth-yl}-1H-benzimidazole propan-2-ol monosolvate.

Authors:  Ozden Ozel Güven; Seval Capanlar; Philip D F Adler; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-17
  7 in total

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