Literature DB >> 21203152

1-[2-(2,6-Dichloro-benz-yloxy)-2-(2-fur-yl)eth-yl]-1H-benzimidazole.

Ozden Ozel Güven, Taner Erdoğan, Simon J Coles, Tuncer Hökelek.   

Abstract

In the mol-ecule of the title compound, C(20)H(16)Cl(2)N(2)O(2), the planar benzimidazole ring system is oriented with respect to the furan and dichloro-benzene rings at dihedral angles of 53.39 (6) and 31.04 (5)°, respectively. In the crystal structure, inter-molecular C-H⋯Cl hydrogen bonds link the mol-ecules into centrosymmetric R(2) (2)(8) dimers. These dimers are connected via a C-H⋯π contact between the benzimidazole and the furan rings, and π-π contacts between the benz-imidazole and dichloro-benzene ring systems [centroid-centroid distances = 3.505 (1), 3.567 (1), 3.505 (1) and 3.567 (1) Å].

Entities:  

Year:  2008        PMID: 21203152      PMCID: PMC2962068          DOI: 10.1107/S1600536808020758

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Brammer & Feczko (1988 ▶); Özel Güven et al. (2007 ▶). For related literature, see: Song & Shin (1998 ▶); Freer et al. (1986 ▶); Peeters et al. (1996 ▶); Peeters et al. (1979 ▶); Caira et al. (2004 ▶). For ring motif details, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C20H16Cl2N2O2 M = 387.25 Orthorhombic, a = 12.7720 (3) Å b = 12.9761 (2) Å c = 21.9732 (5) Å V = 3641.63 (13) Å3 Z = 8 Mo Kα radiation μ = 0.37 mm−1 T = 120 (2) K 0.50 × 0.40 × 0.20 mm

Data collection

Bruker Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.835, T max = 0.929 27000 measured reflections 4181 independent reflections 3311 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.122 S = 1.10 4181 reflections 300 parameters All H-atom parameters refined Δρmax = 0.50 e Å−3 Δρmin = −0.49 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808020758/si2098sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808020758/si2098Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16Cl2N2O2F000 = 1600
Mr = 387.25Dx = 1.413 Mg m3
Orthorhombic, PbcaMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 4594 reflections
a = 12.7720 (3) Åθ = 2.9–27.5º
b = 12.9761 (2) ŵ = 0.37 mm1
c = 21.9732 (5) ÅT = 120 (2) K
V = 3641.63 (13) Å3Block, colorless
Z = 80.50 × 0.40 × 0.20 mm
Bruker Nonius KappaCCD diffractometer4181 independent reflections
Radiation source: fine-focus sealed tube3311 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.048
Detector resolution: 9.091 pixels mm-1θmax = 27.8º
T = 120(2) Kθmin = 3.1º
φ and ω scansh = −13→16
Absorption correction: multi-scan(SADABS; Sheldrick, 2007)k = −14→16
Tmin = 0.835, Tmax = 0.929l = −28→22
27000 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullAll H-atom parameters refined
R[F2 > 2σ(F2)] = 0.047  w = 1/[σ2(Fo2) + (0.0688P)2 + 0.7891P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.122(Δ/σ)max < 0.001
S = 1.10Δρmax = 0.50 e Å3
4181 reflectionsΔρmin = −0.49 e Å3
300 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0141 (10)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.52705 (4)0.15868 (4)0.27568 (2)0.03062 (16)
Cl20.46363 (3)0.33374 (4)0.49707 (2)0.02746 (16)
O10.44665 (9)−0.10157 (10)0.42074 (6)0.0231 (3)
O20.36998 (8)0.13809 (9)0.42664 (5)0.0192 (3)
N10.24117 (10)0.14633 (11)0.53080 (7)0.0183 (3)
N20.22763 (11)0.31228 (12)0.56340 (7)0.0216 (3)
C10.21768 (13)0.24739 (13)0.51763 (9)0.0205 (4)
H10.1946 (14)0.2656 (15)0.4777 (9)0.018 (5)*
C20.26218 (12)0.24900 (13)0.61103 (8)0.0186 (4)
C30.28517 (13)0.27431 (15)0.67109 (9)0.0241 (4)
H30.2801 (14)0.3425 (15)0.6832 (9)0.018 (5)*
C40.31590 (13)0.19444 (16)0.70928 (10)0.0270 (4)
H40.3323 (15)0.2095 (16)0.7491 (10)0.026 (5)*
C50.32404 (14)0.09079 (16)0.68881 (9)0.0269 (4)
H50.3477 (15)0.0361 (15)0.7160 (9)0.026 (5)*
C60.30207 (13)0.06387 (14)0.62937 (9)0.0223 (4)
H60.3068 (15)−0.0068 (17)0.6154 (9)0.028 (5)*
C70.27122 (12)0.14474 (13)0.59120 (8)0.0186 (4)
C80.24218 (13)0.05901 (14)0.48853 (9)0.0198 (4)
H810.1896 (15)0.0733 (16)0.4578 (9)0.026 (5)*
H820.2223 (14)−0.0048 (16)0.5104 (8)0.020 (5)*
C90.34849 (12)0.04456 (13)0.46028 (8)0.0178 (4)
H90.3996 (14)0.0367 (14)0.4940 (8)0.015 (4)*
C100.35358 (12)−0.05012 (13)0.42090 (8)0.0190 (4)
C110.28836 (14)−0.09792 (15)0.38168 (9)0.0249 (4)
H110.2189 (17)−0.0773 (17)0.3727 (10)0.035 (6)*
C120.34340 (15)−0.18372 (15)0.35581 (9)0.0266 (4)
H120.3178 (16)−0.2308 (17)0.3271 (10)0.031 (6)*
C130.43807 (15)−0.18196 (15)0.38007 (9)0.0252 (4)
H130.4966 (17)−0.2303 (18)0.3736 (9)0.032 (6)*
C140.47740 (13)0.14762 (14)0.41337 (9)0.0206 (4)
H1410.5151 (15)0.1398 (14)0.4508 (10)0.019 (5)*
H1420.4958 (16)0.0907 (17)0.3863 (10)0.030 (5)*
C150.49591 (12)0.25242 (13)0.38536 (8)0.0177 (4)
C160.51955 (13)0.26642 (14)0.32382 (8)0.0204 (4)
C170.53897 (13)0.36388 (15)0.29854 (9)0.0243 (4)
H170.5544 (16)0.3651 (17)0.2524 (11)0.037 (6)*
C180.53539 (14)0.45094 (15)0.33540 (10)0.0263 (4)
H180.5515 (16)0.5199 (17)0.3202 (10)0.031 (6)*
C190.51163 (13)0.44195 (14)0.39651 (9)0.0232 (4)
H190.5110 (15)0.5037 (16)0.4233 (9)0.025 (5)*
C200.49238 (13)0.34367 (14)0.42002 (8)0.0190 (4)
U11U22U33U12U13U23
Cl10.0346 (3)0.0290 (3)0.0282 (3)0.00275 (18)−0.0013 (2)−0.0095 (2)
Cl20.0261 (2)0.0342 (3)0.0221 (3)−0.00255 (17)0.00426 (17)−0.00402 (19)
O10.0216 (6)0.0225 (7)0.0253 (7)0.0020 (5)0.0008 (5)−0.0037 (5)
O20.0150 (5)0.0167 (6)0.0258 (7)−0.0010 (4)0.0025 (5)0.0039 (5)
N10.0166 (7)0.0175 (8)0.0208 (8)0.0010 (5)0.0026 (6)0.0011 (6)
N20.0190 (7)0.0190 (8)0.0268 (9)0.0019 (6)0.0037 (6)0.0013 (6)
C10.0179 (8)0.0191 (9)0.0246 (10)0.0015 (7)0.0028 (7)0.0036 (8)
C20.0132 (7)0.0181 (9)0.0246 (10)0.0007 (6)0.0035 (7)−0.0012 (7)
C30.0175 (8)0.0240 (10)0.0308 (11)0.0001 (7)0.0023 (7)−0.0072 (8)
C40.0187 (8)0.0375 (11)0.0249 (11)0.0014 (7)−0.0022 (7)−0.0044 (9)
C50.0209 (8)0.0288 (10)0.0309 (11)0.0035 (7)−0.0013 (8)0.0042 (9)
C60.0189 (8)0.0202 (9)0.0279 (10)0.0018 (7)0.0008 (7)0.0019 (8)
C70.0125 (7)0.0208 (9)0.0224 (9)0.0002 (6)0.0021 (7)−0.0005 (7)
C80.0180 (8)0.0184 (9)0.0228 (10)−0.0029 (6)0.0009 (7)−0.0012 (7)
C90.0175 (8)0.0162 (8)0.0198 (9)−0.0010 (6)−0.0004 (7)0.0017 (7)
C100.0189 (8)0.0187 (9)0.0194 (9)0.0001 (6)0.0034 (7)0.0029 (7)
C110.0235 (9)0.0273 (10)0.0240 (10)−0.0006 (7)−0.0010 (7)−0.0003 (8)
C120.0321 (10)0.0253 (10)0.0224 (10)−0.0033 (8)0.0019 (8)−0.0047 (8)
C130.0304 (9)0.0216 (9)0.0235 (10)0.0019 (7)0.0060 (8)−0.0044 (8)
C140.0154 (8)0.0179 (9)0.0285 (11)−0.0003 (6)0.0027 (7)0.0026 (8)
C150.0118 (7)0.0182 (9)0.0233 (9)0.0002 (6)0.0006 (7)0.0012 (7)
C160.0166 (8)0.0214 (9)0.0232 (10)0.0002 (6)−0.0015 (7)−0.0027 (7)
C170.0214 (9)0.0286 (10)0.0229 (11)−0.0012 (7)−0.0019 (7)0.0061 (8)
C180.0243 (9)0.0203 (10)0.0344 (11)−0.0028 (7)−0.0040 (8)0.0076 (8)
C190.0198 (8)0.0188 (9)0.0311 (11)−0.0009 (7)−0.0033 (7)−0.0026 (8)
C200.0144 (7)0.0225 (9)0.0200 (9)0.0006 (6)−0.0009 (7)−0.0012 (7)
Cl1—C161.7557 (19)C8—H820.99 (2)
Cl2—C201.7373 (19)C9—C81.505 (2)
O1—C101.363 (2)C9—C101.504 (2)
O1—C131.378 (2)C9—H90.992 (18)
O2—C91.4474 (19)C10—C111.350 (2)
O2—C141.4081 (19)C11—C121.434 (3)
N1—C11.376 (2)C11—H110.95 (2)
N1—C71.382 (2)C12—H120.94 (2)
N1—C81.465 (2)C13—C121.322 (3)
N2—C11.318 (2)C13—H130.99 (2)
C1—H10.95 (2)C14—H1410.96 (2)
C2—N21.401 (2)C14—H1420.98 (2)
C2—C31.391 (3)C15—C141.511 (2)
C2—C71.426 (2)C15—C161.397 (3)
C3—H30.926 (19)C15—C201.409 (2)
C4—C31.390 (3)C17—C161.403 (3)
C4—C51.422 (3)C17—C181.391 (3)
C4—H40.92 (2)C17—H171.03 (2)
C5—H50.98 (2)C18—H180.98 (2)
C6—C51.381 (3)C19—C181.382 (3)
C6—C71.400 (2)C19—H190.99 (2)
C6—H60.97 (2)C20—C191.398 (2)
C8—H810.97 (2)
C10—O1—C13107.64 (14)C10—C9—H9108.5 (10)
C14—O2—C9111.36 (12)O1—C10—C9116.05 (14)
C1—N1—C7106.07 (15)C11—C10—O1108.15 (15)
C1—N1—C8127.26 (16)C11—C10—C9135.73 (15)
C7—N1—C8126.52 (15)C10—C11—C12107.90 (16)
C1—N2—C2103.05 (15)C10—C11—H11125.6 (14)
N1—C1—H1119.8 (12)C12—C11—H11126.5 (14)
N2—C1—N1115.30 (17)C11—C12—H12127.0 (13)
N2—C1—H1124.9 (12)C13—C12—C11105.97 (18)
N2—C2—C7110.68 (15)C13—C12—H12127.0 (13)
C3—C2—N2129.52 (17)O1—C13—H13121.0 (12)
C3—C2—C7119.78 (16)C12—C13—O1110.33 (17)
C4—C3—C2117.14 (18)C12—C13—H13128.6 (12)
C4—C3—H3123.9 (12)O2—C14—C15108.41 (13)
C2—C3—H3118.9 (12)O2—C14—H141107.6 (12)
C3—C4—C5122.33 (19)O2—C14—H142107.1 (12)
C3—C4—H4118.7 (13)C15—C14—H141111.5 (12)
C5—C4—H4119.0 (13)C15—C14—H142113.3 (13)
C4—C5—H5121.1 (12)H141—C14—H142108.7 (17)
C6—C5—C4121.58 (18)C16—C15—C20114.88 (15)
C6—C5—H5117.3 (12)C16—C15—C14123.02 (16)
C5—C6—C7115.74 (17)C20—C15—C14122.09 (16)
C5—C6—H6121.8 (12)C15—C16—C17122.57 (16)
C7—C6—H6122.5 (12)C15—C16—Cl1119.42 (13)
N1—C7—C6131.67 (17)C17—C16—Cl1118.00 (14)
N1—C7—C2104.89 (14)C16—C17—H17115.9 (12)
C6—C7—C2123.42 (17)C18—C17—C16119.71 (18)
N1—C8—C9111.46 (14)C18—C17—H17124.4 (12)
N1—C8—H81106.7 (12)C17—C18—H18122.6 (13)
N1—C8—H82109.6 (11)C19—C18—C17120.31 (18)
C9—C8—H81111.2 (12)C19—C18—H18117.1 (13)
C9—C8—H82109.1 (11)C18—C19—C20118.35 (18)
H81—C8—H82108.7 (16)C18—C19—H19120.6 (12)
O2—C9—C10112.52 (14)C20—C19—H19121.0 (12)
O2—C9—C8106.10 (13)C15—C20—Cl2118.12 (13)
O2—C9—H9110.0 (10)C19—C20—C15124.17 (17)
C8—C9—H9107.4 (10)C19—C20—Cl2117.71 (14)
C10—C9—C8112.22 (14)
C13—O1—C10—C110.53 (19)C5—C6—C7—C2−0.1 (2)
C13—O1—C10—C9−176.90 (14)O2—C9—C8—N1−61.67 (18)
C10—O1—C13—C12−1.1 (2)O2—C9—C10—C11−81.3 (2)
C14—O2—C9—C10−74.57 (17)O2—C9—C10—O195.24 (17)
C14—O2—C9—C8162.36 (15)C8—C9—C10—C1138.3 (3)
C9—O2—C14—C15−173.07 (14)C8—C9—C10—O1−145.19 (15)
C7—N1—C1—N2−0.99 (19)C10—C9—C8—N1175.07 (14)
C8—N1—C1—N2−176.72 (15)O1—C10—C11—C120.1 (2)
C1—N1—C7—C20.65 (16)C9—C10—C11—C12176.83 (18)
C1—N1—C7—C6178.95 (17)C10—C11—C12—C13−0.8 (2)
C8—N1—C7—C2176.41 (14)O1—C13—C12—C111.1 (2)
C8—N1—C7—C6−5.3 (3)C16—C15—C14—O2−108.33 (18)
C1—N1—C8—C990.6 (2)C20—C15—C14—O272.8 (2)
C7—N1—C8—C9−84.3 (2)C14—C15—C16—Cl10.8 (2)
C2—N2—C1—N10.85 (18)C14—C15—C16—C17−178.50 (15)
C3—C2—N2—C1−179.27 (17)C20—C15—C16—Cl1179.66 (11)
C7—C2—N2—C1−0.38 (17)C20—C15—C16—C170.4 (2)
N2—C2—C3—C4178.50 (16)C14—C15—C20—Cl2−1.0 (2)
C7—C2—C3—C4−0.3 (2)C14—C15—C20—C19178.26 (15)
N2—C2—C7—N1−0.18 (17)C16—C15—C20—Cl2−179.96 (12)
N2—C2—C7—C6−178.66 (15)C16—C15—C20—C19−0.7 (2)
C3—C2—C7—N1178.83 (14)C18—C17—C16—Cl1−178.99 (13)
C3—C2—C7—C60.3 (2)C18—C17—C16—C150.3 (3)
C5—C4—C3—C20.0 (3)C16—C17—C18—C19−0.8 (3)
C3—C4—C5—C60.3 (3)C20—C19—C18—C170.5 (3)
C7—C6—C5—C4−0.2 (2)Cl2—C20—C19—C18179.51 (13)
C5—C6—C7—N1−178.12 (16)C15—C20—C19—C180.2 (3)
D—H···AD—HH···AD···AD—H···A
C19—H19···Cl2i1.00 (2)2.76 (2)3.7470 (19)172.0 (15)
C1—H1···Cg1ii0.95 (2)2.533 (19)3.441 (2)158.8 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C19—H19⋯Cl2i1.00 (2)2.76 (2)3.7470 (19)172.0 (15)
C1—H1⋯Cg1ii0.95 (2)2.533 (19)3.441 (2)158.8 (16)

Symmetry codes: (i) ; (ii) .

  5 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Single-dose oral fluconazole in the treatment of vaginal candidosis.

Authors:  K W Brammer; J M Feczko
Journal:  Ann N Y Acad Sci       Date:  1988       Impact factor: 5.691

3.  Synthesis and antimicrobial activity of some novel phenyl and benzimidazole substituted benzyl ethers.

Authors:  Ozden Ozel Güven; Taner Erdoğan; Hakan Göker; Sulhiye Yildiz
Journal:  Bioorg Med Chem Lett       Date:  2007-01-25       Impact factor: 2.823

4.  Preparation and crystal characterization of a polymorph, a monohydrate, and an ethyl acetate solvate of the antifungal fluconazole.

Authors:  Mino R Caira; Khouloud A Alkhamis; Rana M Obaidat
Journal:  J Pharm Sci       Date:  2004-03       Impact factor: 3.534

5.  The antifungal drug clotrimazole.

Authors:  H Song; H S Shin
Journal:  Acta Crystallogr C       Date:  1998-11-15       Impact factor: 1.172

  5 in total
  12 in total

1.  1-[2-(4-Chloro-benz-yloxy)-2-phenyl-ethyl]-1H-benzotriazole.

Authors:  Ozden Ozel Güven; Meral Bayraktar; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-08

2.  1-[2-(2,4-Dichloro-benz-yloxy)-2-phenyl-ethyl]-1H-1,2,4-triazole.

Authors:  Ozden Ozel Güven; Hakan Tahtacı; M Nawaz Tahir; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-29

3.  1-(1H-Benzimidazol-1-ylmeth-yl)-3-[2-(di-isopropyl-amino)eth-yl]-1H-benzimid-azolium bromide 0.25-hydrate.

Authors:  Hakan Arslan; Don Vanderveer; Serpil Demir; Ismail Ozdemir; Bekir Cetinkaya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-06

4.  1-[2-(2,4-Dichloro-benz-yloxy)-2-(2-fur-yl)eth-yl]-1H-1,2,4-triazole.

Authors:  Ozden Ozel Güven; Hakan Tahtacı; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

5.  1-[2-(4-Bromo-benz-yloxy)-2-phenyl-ethyl]-1H-1,2,4-triazole.

Authors:  Ozden Ozel Güven; Hakan Tahtacı; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13

6.  1-[2-(2,6-Dichloro-benz-yloxy)-2-(2-fur-yl)eth-yl]-1H-1,2,4-triazole.

Authors:  Ozden Ozel Güven; Hakan Tahtacı; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12

7.  1-{2-Phenyl-2-[4-(trifluoro-meth-yl)-benzyl-oxy]eth-yl}-1H-benzimidazole.

Authors:  Ozden Ozel Güven; Taner Erdoğan; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31

8.  1-[2-(3,4-Dichloro-benz-yloxy)-2-phenyl-ethyl]-1H-benzimidazole.

Authors:  Ozden Ozel Güven; Taner Erdoğan; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26

9.  1-[2-(2,4-Dichloro-benz-yloxy)-2-(furan-2-yl)eth-yl]-1H-benzotriazole.

Authors:  Ozden Ozel Güven; Meral Bayraktar; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-17

10.  1-{2-Benz-yloxy-2-[4-(morpholin-4-yl)phen-yl]eth-yl}-1H-benzimidazole.

Authors:  Ozden Ozel Güven; Seval Capanlar; Philip D F Adler; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-22
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