Literature DB >> 21203277

6-Amino-4-(4-chloro-phen-yl)-2-oxo-1,2-dihydro-pyridine-3,5-dicarbonitrile ethanol solvate.

Runhong Jia, Shujiang Tu.   

Abstract

The title compound, C(13)H(7)ClN(4)O·C(2)H(6)O, was synthesized by the reaction of 4-chloro-benzaldehyde, malononitrile and 10% sodium hydroxide solution in an aqueous medium. In the crystal structure, the crystal packing is stabilized by inter-molecular N-H⋯N, O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21203277      PMCID: PMC2962196          DOI: 10.1107/S1600536808022551

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Hasvold et al. (2003 ▶); Kappe (2004 ▶); Li et al. (2000 ▶); Mederski et al. (1999 ▶); Parlow et al. (2003 ▶); Varma (1999 ▶).

Experimental

Crystal data

C13H7ClN4O·C2H6O M = 316.74 Triclinic, a = 6.7787 (10) Å b = 10.4318 (14) Å c = 11.2857 (17) Å α = 88.634 (2)° β = 84.643 (1)° γ = 81.700 (1)° V = 786.2 (2) Å3 Z = 2 Mo Kα radiation μ = 0.26 mm−1 T = 298 (2) K 0.14 × 0.09 × 0.03 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.965, T max = 0.992 4165 measured reflections 2727 independent reflections 1162 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.140 S = 1.01 2727 reflections 199 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SMART; data reduction: SAINT (Bruker, 1999 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808022551/bq2082sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022551/bq2082Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H7ClN4O·C2H6OZ = 2
Mr = 316.74F000 = 328
Triclinic, P1Dx = 1.338 Mg m3
a = 6.7787 (10) ÅMo Kα radiation λ = 0.71073 Å
b = 10.4318 (14) ÅCell parameters from 566 reflections
c = 11.2857 (17) Åθ = 2.7–20.3º
α = 88.634 (2)ºµ = 0.26 mm1
β = 84.6430 (10)ºT = 298 (2) K
γ = 81.7000 (10)ºBlock, colorless
V = 786.2 (2) Å30.14 × 0.09 × 0.03 mm
Bruker SMART CCD area-detector diffractometer2727 independent reflections
Radiation source: fine-focus sealed tube1162 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.033
T = 298(2) Kθmax = 25.0º
φ and ω scansθmin = 2.0º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −8→7
Tmin = 0.965, Tmax = 0.992k = −7→12
4165 measured reflectionsl = −13→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H-atom parameters constrained
wR(F2) = 0.140  w = 1/[σ2(Fo2) + (0.0453P)2 + 0.0621P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2727 reflectionsΔρmax = 0.31 e Å3
199 parametersΔρmin = −0.24 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.3974 (2)0.82840 (13)−0.02206 (12)0.0905 (6)
N10.5949 (5)0.1640 (3)0.4620 (3)0.0420 (9)
H10.62640.09640.50510.050*
N20.8641 (5)0.2447 (3)0.5286 (3)0.0520 (10)
H2A0.88770.17480.57000.062*
H2B0.93980.30400.53040.062*
N30.8433 (5)0.5684 (4)0.4171 (3)0.0565 (11)
N40.0902 (6)0.2779 (4)0.1960 (3)0.0705 (13)
O10.3337 (4)0.0727 (3)0.4075 (2)0.0544 (9)
O2−0.0003 (5)0.0195 (3)0.6598 (3)0.0923 (13)
H2−0.0927−0.02370.66390.138*
C10.7115 (6)0.2611 (4)0.4621 (3)0.0389 (11)
C20.6615 (5)0.3715 (4)0.3915 (3)0.0353 (10)
C30.5067 (6)0.3773 (4)0.3158 (3)0.0376 (10)
C40.3897 (6)0.2774 (4)0.3224 (3)0.0389 (11)
C50.4310 (6)0.1666 (4)0.3979 (3)0.0405 (11)
C60.7651 (6)0.4800 (4)0.4034 (3)0.0422 (11)
C70.2249 (6)0.2769 (4)0.2514 (4)0.0473 (12)
C80.4755 (6)0.4877 (4)0.2317 (3)0.0389 (10)
C90.2890 (6)0.5612 (4)0.2250 (4)0.0526 (12)
H90.17890.54060.27330.063*
C100.2668 (7)0.6653 (5)0.1464 (4)0.0615 (14)
H100.14160.71450.14270.074*
C110.4283 (8)0.6966 (4)0.0736 (4)0.0576 (13)
C120.6122 (7)0.6221 (4)0.0768 (4)0.0494 (12)
H120.72020.64120.02590.059*
C130.6369 (6)0.5191 (4)0.1552 (3)0.0425 (11)
H130.76220.46970.15740.051*
C140.0839 (8)0.0126 (5)0.7684 (4)0.0776 (16)
H14A0.1464−0.07530.78280.093*
H14B−0.02000.03590.83240.093*
C150.2369 (8)0.1030 (5)0.7664 (5)0.0884 (18)
H15A0.29410.09800.84130.133*
H15B0.17430.19000.75280.133*
H15C0.34040.07880.70370.133*
U11U22U33U12U13U23
Cl10.1212 (13)0.0645 (10)0.0815 (10)−0.0005 (8)−0.0159 (8)0.0352 (8)
N10.050 (2)0.032 (2)0.049 (2)−0.0153 (18)−0.0145 (17)0.0133 (18)
N20.058 (2)0.041 (2)0.065 (2)−0.0234 (19)−0.025 (2)0.015 (2)
N30.064 (3)0.056 (3)0.057 (2)−0.028 (2)−0.016 (2)0.010 (2)
N40.063 (3)0.068 (3)0.088 (3)−0.025 (2)−0.031 (2)0.018 (3)
O10.0521 (19)0.047 (2)0.074 (2)−0.0301 (16)−0.0224 (16)0.0188 (17)
O20.097 (3)0.081 (3)0.119 (3)−0.050 (2)−0.067 (2)0.045 (2)
C10.043 (3)0.036 (3)0.041 (2)−0.011 (2)−0.011 (2)0.004 (2)
C20.041 (3)0.031 (3)0.037 (2)−0.014 (2)−0.0074 (19)0.004 (2)
C30.041 (3)0.034 (3)0.038 (2)−0.011 (2)0.000 (2)0.004 (2)
C40.038 (2)0.040 (3)0.042 (2)−0.014 (2)−0.008 (2)0.008 (2)
C50.038 (3)0.040 (3)0.045 (3)−0.007 (2)−0.009 (2)0.008 (2)
C60.047 (3)0.041 (3)0.041 (3)−0.013 (2)−0.006 (2)0.007 (2)
C70.046 (3)0.043 (3)0.055 (3)−0.015 (2)−0.008 (2)0.013 (2)
C80.040 (3)0.034 (3)0.045 (3)−0.014 (2)−0.005 (2)0.007 (2)
C90.052 (3)0.040 (3)0.065 (3)−0.005 (2)−0.004 (2)0.009 (3)
C100.052 (3)0.050 (3)0.077 (4)0.006 (3)−0.005 (3)0.009 (3)
C110.072 (4)0.045 (3)0.057 (3)−0.004 (3)−0.018 (3)0.016 (3)
C120.064 (3)0.046 (3)0.042 (3)−0.023 (3)−0.010 (2)0.012 (2)
C130.043 (3)0.042 (3)0.045 (3)−0.012 (2)−0.010 (2)0.008 (2)
C140.103 (4)0.058 (4)0.078 (4)−0.023 (3)−0.027 (3)0.010 (3)
C150.085 (4)0.074 (4)0.115 (5)−0.020 (3)−0.036 (3)−0.014 (4)
Cl1—C111.728 (4)C4—C71.435 (5)
N1—C11.372 (4)C8—C91.388 (5)
N1—C51.377 (4)C8—C131.401 (5)
N1—H10.8600C9—C101.385 (5)
N2—C11.323 (4)C9—H90.9300
N2—H2A0.8600C10—C111.380 (6)
N2—H2B0.8600C10—H100.9300
N3—C61.147 (5)C11—C121.374 (6)
N4—C71.152 (5)C12—C131.377 (5)
O1—C51.255 (4)C12—H120.9300
O2—C141.396 (5)C13—H130.9300
O2—H20.8200C14—C151.497 (6)
C1—C21.404 (5)C14—H14A0.9700
C2—C31.407 (5)C14—H14B0.9700
C2—C61.432 (5)C15—H15A0.9600
C3—C41.395 (5)C15—H15B0.9600
C3—C81.479 (5)C15—H15C0.9600
C4—C51.429 (5)
C1—N1—C5124.9 (3)C10—C9—C8120.0 (4)
C1—N1—H1117.5C10—C9—H9120.0
C5—N1—H1117.5C8—C9—H9120.0
C1—N2—H2A120.0C11—C10—C9120.7 (4)
C1—N2—H2B120.0C11—C10—H10119.6
H2A—N2—H2B120.0C9—C10—H10119.6
C14—O2—H2109.5C12—C11—C10119.7 (4)
N2—C1—N1118.0 (4)C12—C11—Cl1120.5 (4)
N2—C1—C2124.1 (4)C10—C11—Cl1119.8 (4)
N1—C1—C2117.9 (4)C11—C12—C13120.2 (4)
C1—C2—C3120.7 (4)C11—C12—H12119.9
C1—C2—C6118.1 (3)C13—C12—H12119.9
C3—C2—C6121.1 (4)C12—C13—C8120.8 (4)
C4—C3—C2118.4 (4)C12—C13—H13119.6
C4—C3—C8122.5 (3)C8—C13—H13119.6
C2—C3—C8119.1 (4)O2—C14—C15109.8 (4)
C3—C4—C5121.8 (4)O2—C14—H14A109.7
C3—C4—C7122.4 (4)C15—C14—H14A109.7
C5—C4—C7115.7 (4)O2—C14—H14B109.7
O1—C5—N1118.8 (4)C15—C14—H14B109.7
O1—C5—C4125.3 (4)H14A—C14—H14B108.2
N1—C5—C4115.9 (4)C14—C15—H15A109.5
N3—C6—C2177.2 (5)C14—C15—H15B109.5
N4—C7—C4178.7 (5)H15A—C15—H15B109.5
C9—C8—C13118.5 (4)C14—C15—H15C109.5
C9—C8—C3121.9 (4)H15A—C15—H15C109.5
C13—C8—C3119.7 (4)H15B—C15—H15C109.5
C5—N1—C1—N2179.8 (4)C7—C4—C5—O1−1.2 (6)
C5—N1—C1—C2−0.3 (6)C3—C4—C5—N1−1.0 (6)
N2—C1—C2—C3174.8 (4)C7—C4—C5—N1177.1 (4)
N1—C1—C2—C3−5.0 (6)C4—C3—C8—C952.2 (6)
N2—C1—C2—C6−8.4 (6)C2—C3—C8—C9−128.5 (4)
N1—C1—C2—C6171.8 (3)C4—C3—C8—C13−127.0 (4)
C1—C2—C3—C47.1 (6)C2—C3—C8—C1352.4 (5)
C6—C2—C3—C4−169.6 (4)C13—C8—C9—C10−1.9 (6)
C1—C2—C3—C8−172.3 (4)C3—C8—C9—C10178.9 (4)
C6—C2—C3—C811.0 (6)C8—C9—C10—C110.4 (7)
C2—C3—C4—C5−4.0 (6)C9—C10—C11—C121.6 (7)
C8—C3—C4—C5175.4 (4)C9—C10—C11—Cl1−179.0 (4)
C2—C3—C4—C7178.1 (4)C10—C11—C12—C13−2.2 (7)
C8—C3—C4—C7−2.5 (6)Cl1—C11—C12—C13178.5 (3)
C1—N1—C5—O1−178.4 (4)C11—C12—C13—C80.7 (6)
C1—N1—C5—C43.3 (6)C9—C8—C13—C121.3 (6)
C3—C4—C5—O1−179.2 (4)C3—C8—C13—C12−179.5 (4)
D—H···AD—HH···AD···AD—H···A
O2—H2···O1i0.822.022.755 (4)149
N2—H2B···N3ii0.862.253.084 (5)164
N2—H2A···O2iii0.861.982.832 (4)168
N1—H1···O1iv0.862.002.849 (4)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O1i0.822.022.755 (4)149
N2—H2B⋯N3ii0.862.253.084 (5)164
N2—H2A⋯O2iii0.861.982.832 (4)168
N1—H1⋯O1iv0.862.002.849 (4)171

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  Crystal structures and Hirshfeld surface analyses of 2-amino-4-(4-bromo-phen-yl)-6-oxo-1-phenyl-1,4,5,6-tetra-hydro-pyridine-3-carbo-nitrile hemi-hydrate and 1,6-di-amino-2-oxo-4-phenyl-1,2-di-hydro-pyridine-3,5-dicarbo-nitrile.

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