Literature DB >> 35974827

Crystal structures and Hirshfeld surface analyses of 2-amino-4-(4-bromo-phen-yl)-6-oxo-1-phenyl-1,4,5,6-tetra-hydro-pyridine-3-carbo-nitrile hemi-hydrate and 1,6-di-amino-2-oxo-4-phenyl-1,2-di-hydro-pyridine-3,5-dicarbo-nitrile.

Farid N Naghiyev1, Victor N Khrustalev2,3, Nikolai U Venskovsky2, Tatiana A Tereshina3, Ali N Khalilov4,1, Mehmet Akkurt5, Ajaya Bhattarai6, İbrahim G Mamedov1.   

Abstract

In 2-amino-4-(4-bromo-phen-yl)-6-oxo-1-phenyl-1,4,5,6-tetra-hydro-pyridine-3-carbo-nitrile hemihydrate, C18H14BrN3O·0.5H2O, (I), pairs of mol-ecules are linked by pairs of N-H⋯N hydrogen bonds, forming dimers with an R 2 2(12) ring motif. The dimers are connected by N-H⋯Br and O-H⋯O hydrogen bonds, and C-Br⋯π inter-actions, forming layers parallel to the (010) plane. 1,6-Di-amino-2-oxo-4-phenyl-1,2-di-hydro-pyridine-3,5-dicarbo-nitrile, C13H9N5O, (II), crystallizes in the triclinic space group P with two independent mol-ecules (IIA and IIB) in the asymmetric unit. In the crystal of (II), mol-ecules IIA and IIB are linked by inter-molecular N-H⋯N and N-H⋯O hydrogen bonds into layers parallel to (001). These layers are connected along the c-axis direction by weak C-H⋯N contacts. C-H⋯π and C-N⋯π inter-actions connect adjacent mol-ecules, forming chains along the a-axis direction. In (I) and (II), the stability of the packing is ensured by van der Waals inter-actions between the layers. In (I), Hirshfeld surface analysis showed that the most important contributions to the crystal packing are from H⋯H (37.9%), C⋯H/H⋯C (18.4%), Br⋯H/H⋯Br (13.3%), N⋯H/H⋯N (11.5%) and O⋯H/H⋯O (10.0%) inter-actions, while in (II), H⋯H inter-actions are the most significant contributors to the crystal packing (27.6% for mol-ecule IIA and 23.1% for mol-ecule IIB). © Naghiyev et al. 2022.

Entities:  

Keywords:  Hirshfeld surface analysis; crystal structure; dimers; disorder; hydrogen bonds; van der Waals inter­actions

Year:  2022        PMID: 35974827      PMCID: PMC9361375          DOI: 10.1107/S2056989022007356

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

The formation of C—C, C—O, and C—N bonds is one of the essential transformation reactions of organic chemistry (Zubkov et al., 2018 ▸; Shikhaliyev et al., 2019 ▸; Viswanathan et al., 2019 ▸; Gurbanov et al., 2020 ▸). Nitro­gen-containing heterocycles, especially tetra­hydro­pyridine homologs, are well-known heterocyclic scaffolds that exhibit a broad spectrum of biological and pharmaceutical activities (Sośnicki & Idzik, 2019 ▸; Sangwan et al., 2022 ▸). Being an important structural fragment of various natural products, they play a key role in cell metabolism. In view of the growing biological value of pyridine derivatives, we have considered the study of this class of compounds (Naghiyev et al., 2020b ▸) to be of great inter­est. Thus, in the framework of our ongoing structural studies (Naghiyev et al., 2020a ▸,b ▸, 2021 ▸, 2021a ▸,b ▸, 2022 ▸; Khalilov et al., 2022 ▸), we report here the crystal structures and Hirshfeld surface analyses of 2-amino-4-(4-bromo­phen­yl)-6-oxo-1-phenyl-1,4,5,6-tetra­hydro­pyridine-3-carbo­nitrile hemihydrate (I) and 1,6-di­amino-2-oxo-4-phenyl-1,2-di­hydro­pyridine-3,5-dicarbo­nitrile (II).

Structural commentary

Compound (I) crystallizes in the monoclinic space group C2/c with Z = 4. In (I) (Fig. 1 ▸), the conformation of the central di­hydro­pyridine ring is close to screw-boat with puckering parameters (Cremer & Pople, 1975 ▸) Q T = 0.4650 (16) Å, θ = 61.3 (2)° and φ = 211.4 (2)°. The phenyl (C7–C12) and bromo­phenyl (C14–C19) rings form dihedral angles of 64.68 (8) and 88.25 (7)°, respectively, with the mean plane of the central di­hydro­pyridine ring. The chirality about the C4 atom is S for this molecule, but both enantiomers are present in the crystal. The Br atom is disordered over two sites in a 0.59 (2):0.41 (2) ratio.
Figure 1

The mol­ecular structure of compound (I) with displacement ellipsoids drawn at the 30% probability level. The O—H⋯O hydrogen bond is drawn with a dashed line. Only the major component of the bromide disorder is shown for clarity.

Compound (II) (Fig. 2 ▸) contains two independent mol­ecules (IIA and IIB, atom labels for mol­ecule IIB including the suffix ’) in the asymmetric unit. Fig. 3 ▸ shows the overlay of mol­ecules IIA and IIB (r.m.s. deviation = 0.210 Å). The pyridine and phenyl rings subtend dihedral angles of 52.95 (4)° in mol­ecule IIA and 56.75 (3) ° in mol­ecule IIB.
Figure 2

The mol­ecular structure of compound (II). Displacement ellipsoids are drawn at the 50% probability level.

Figure 3

Overlay image of the two independent mol­ecules (IIA and IIB) in the asymmetric unit of compound (II). Color code: carbon (gray), hydrogen (white), nitro­gen (blue) and oxygen (red).

The geometric parameters of mol­ecules (I), (IIA) and (IIB) are normal and comparable to those of related compounds listed in the Database survey section.

Supra­molecular features

In (I), pairs of N—H⋯N hydrogen bonds connect the mol­ecules, forming dimers with an (12) ring motif (Fig. 4 ▸, Table 1 ▸). Further N—H⋯Br and O—H⋯O hydrogen bonds, as well as C—Br⋯π inter­actions [C17—Br1⋯Cg2vii: Br1⋯Cg2vii = 3.493 (2) Å, C17⋯Cg2vii = 5.3027 (18) Å, C17—Br1⋯Cg2vii = 157.80 (14)°; C17—Br1A⋯Cg2vii: Br1A⋯Cg2vii = 3.434 (6) Å, C17⋯Cg2vii = 5.3027 (18) Å, C17—Br1A⋯Cg2vii = 164.8 (3)°; symmetry code: (vii) x, 2 − y, −z +  ; Cg2 is the centroid of the C7–C12 phenyl ring], link the dimers, forming layers parallel to the (010) plane (Fig. 4 ▸). Inter­layer van der Waals inter­actions strengthen the mol­ecular packing.
Figure 4

Crystal packing of compound (I) viewed down the b axis, showing the O—H⋯O, N—H⋯O and C—Br⋯π inter­actions.

Table 1

Hydrogen-bond geometry (Å, °) for (I)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯Br1i 0.82 (2)2.75 (2)3.507 (3)154.4 (19)
N2—H2A⋯Br1A i 0.82 (2)2.73 (2)3.493 (4)155.1 (19)
N2—H2B⋯N3ii 0.84 (2)2.24 (2)3.0583 (18)165 (2)
C5—H5B⋯N3iii 0.992.593.5426 (19)160
C8—H8⋯O2iv 0.952.493.223 (2)134
C12—H12⋯N3v 0.952.653.411 (2)138
C16—H16⋯N3vi 0.952.623.5283 (19)160
O2—H2C⋯O10.85 (1)2.09 (2)2.8739 (14)153 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

In the crystal of (II), mol­ecules IIA and IIB are linked by inter­molecular N—H⋯N and N—H⋯O hydrogen bonds (Table 2 ▸) into layers parallel to (001). These layers are connected along the c-axis direction by weak C—H⋯N contacts. Furthermore, C—H⋯π (Table 1 ▸) and C—N⋯π [C7—N3⋯Cg3: N3⋯Cg3 = 3.0831 (8) Å, C7⋯Cg3 = 3.3390 (8) Å, C7—N3⋯Cg3 = 92.50 (5)°; C7′—N3′⋯Cg1v: N3′⋯Cg1v = 3.4626 (9) Å, C7′⋯Cg1v = 3.7591 (9) Å, C7′—N3′⋯Cg1v = 95.78 (6)°; C14—N4⋯Cg3vi: N4⋯Cg3vi = 3.3807 (7) Å, C14⋯Cg3vi = 3.8513 (7) Å, C14—N4⋯Cg3vi = 105.23 (5)°; symmetry codes: (v) 1 + x, y, z, (vi) −1 + x, 1 + y, z; where Cg1 and Cg3 are the centroids of the N1/C2 –C6 and N1′/C2′ –C6′ pyridine rings of mol­ecules IIA and IIB, respectively] inter­actions connect the adjacent mol­ecules, forming chains along the a-axis direction (Fig. 5 ▸). The stability of the mol­ecular packaging is ensured by van der Waals inter­actions between the layers.
Table 2

Hydrogen-bond geometry (Å, °) for (II)

Cg2 is the centroid of the C8–C13 phenyl ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯N4i 0.913 (13)2.541 (13)3.3713 (9)151.6 (11)
N2—H2B⋯N4ii 0.916 (14)2.495 (14)3.2404 (10)138.7 (11)
N2—H2B⋯O1iii 0.916 (14)2.381 (13)3.0650 (8)131.5 (11)
N5—H5A⋯N3′ii 0.897 (14)2.525 (14)3.1431 (9)126.6 (11)
N5—H5B⋯O1′ii 0.930 (14)1.986 (14)2.8853 (8)162.3 (12)
N2′—H2A′⋯O1′iv 0.898 (13)2.186 (13)3.0608 (8)164.4 (11)
N2′—H2B′⋯N2iii 0.902 (15)2.681 (14)3.1829 (8)116.1 (10)
N2′—H2B′⋯O10.902 (15)2.250 (15)3.1373 (9)167.5 (12)
N5′—H5A′⋯N3′i 0.887 (15)2.102 (15)2.9314 (8)155.2 (13)
C9′—H9′⋯Cg20.952.933.7972 (5)153

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Figure 5

View down the b axis of compound (II) showing the C—H⋯π and C—N⋯π hydrogen bonds (dashed lines). The intra­molecular C—N⋯π inter­action in mol­ecule IIA is omitted for clarity.

Hirshfeld surface analyses

CrystalExplorer17.5 (Turner et al., 2017 ▸) was used to construct Hirshfeld surfaces and generate the related two-dimensional fingerprint plots to illustrate the inter­molecular inter­actions for mol­ecules (I) and (II). The d norm mappings of (I) were conducted in the range −0.4915 to +1.2143 a.u. Bright-red circles on the d norm surfaces (Fig. 6 ▸ a,b) represent N—H⋯O and O—H⋯O inter­action zones. Red areas on the Hirshfeld surfaces are also caused by the N—H⋯Br and C—H⋯N inter­actions (Tables 1 ▸ and 3 ▸).
Figure 6

(a) Front and (b) back views of the Hirshfeld surfaces mapped over d norm for (I).

Table 3

Summary of short inter­atomic contacts (Å) in compound (I)

ContactDistanceSymmetry operation
Br1A⋯H2A 2.73 x, 2 − y, −  + z
O1⋯H2C 2.091 − x, y,  − z
O1⋯H192.40 x, −1 + y, z
N3⋯H2B 2.24  − x,  − y, 1 − z
H12⋯N32.65  − x,  − y, 1 − z
N3⋯H162.62  − x,  + y,  − z
H8⋯O22.49 x, 1 + y, z
H9⋯C182.691 − x, y,  − z
O2⋯O12.871 − x, y,  − z
The fingerprint plots of (I) (Fig. 7 ▸) show that, while H⋯H (37.9%; Fig. 7 ▸ b) inter­actions provide the highest contribution (Table 3 ▸), as would be expected for a mol­ecule with so many H atoms, C⋯H/H⋯C (18.4%; Fig. 7 ▸ c), Br⋯H/H⋯Br (13.3%; Fig. 7 ▸ d), N⋯H/H⋯N (11.5%; Fig. 7 ▸ e) and O⋯H/H⋯O (10.0%; Fig. 7 ▸ f) contacts are also significant. Table 5 ▸ shows the contributions of all contacts.
Figure 7

The two-dimensional fingerprint plots of (I), showing all inter­actions (a), and those delineated into H⋯H (b), C⋯H/H⋯C (c), Br⋯H/H⋯Br (d), N⋯H/H⋯N (e) and O⋯H/H⋯O (f) inter­actions. The d i and d e values are the closest inter­nal and external distances (in Å) from given points on the Hirshfeld surfaces.

Table 5

Percentage contributions of inter­atomic contacts to the Hirshfeld surface for compound (I)

ContactPercentage contribution
H⋯H37.9
C⋯H/H⋯C18.4
Br⋯H/H⋯Br13.3
N⋯H/H⋯N11.5
O⋯H/H⋯O10.0
Br⋯C/C⋯Br4.2
C⋯C1.5
N⋯C/C⋯N1.3
N⋯N0.8
Br⋯Br0.6
C⋯O/O⋯C0.5
In (II), the d norm mappings for mol­ecules IIA and IIB were performed in the ranges −0.5399 to 1.2085 a.u. and −0.5388 to 1.1921 a.u., respectively. The locations of N—H⋯N inter­actions are shown by bright red circles on the d norm surfaces (Fig. 8 ▸ a,b for A and Fig. 8 ▸ c,d for B). Red spots on the Hirshfeld surfaces are also caused by N—H⋯O inter­actions (Tables 2 ▸ and 4 ▸).
Figure 8

Front and back views of the three-dimensional Hirshfeld surface of mol­ecules (IIA) and (IIB) plotted over d norm in the range −0.5399 to 1.2085 a.u. for (IIA) and in the range −0.5388 to 1.1921 a.u. for (IIB).

Table 4

Summary of short inter­atomic contacts (Å) in compound (II)

ContactDistanceSymmetry operation
O1⋯H2B2.25 x, y, z
H2A⋯N42.54 x, −1 + y, z
H2B⋯O12.381 − x, −y, 1 − z
H13⋯H5A 2.461 − x, 1 − y, 1 − z
N2⋯H2B2.681 − x, −y, 1 − z
H10⋯H12′2.462 − x, 1 − y, −z
N4⋯H2A2.82−1 + x, 1 + y, z
H5B⋯O1′1.991 − x, 1 − y, 1 − z
H9⋯C12′2.83−1 + x, y, z
H12⋯N5′2.89 x, 1 + y, z
H2A′⋯O1′2.192 − x, −y, 1 − z
N3′⋯H5A2.101 + x, y, z
H10′⋯N4′2.552 − x, 1 − y, −z
H12′⋯H12′2.363 − x, 1 − y, −z
Fig. 9 ▸ displays the full two-dimensional fingerprint plot and those delineated into the major contacts. H⋯H inter­actions (Fig. 9 ▸ b; 27.6% contribution for IIA; 23.1% for IIB) are the major factor in the crystal packing with N⋯H/H⋯N (Fig. 9 ▸ c; 25.2% for IIA; 28.3% for IIB), C⋯H/H⋯C (Fig. 9 ▸ d; 15.2% for IIA; 21.2% for IIB) and O⋯H/H⋯O (Fig. 9 ▸ e; 11.4% for IIA; 8.8% for IIB) inter­actions representing the next highest contributions. The percentage contributions of comparative weaker inter­actions of mol­ecules IIA and IIB are given in Table 6 ▸. The surroundings of mol­ecules IIA and IIB are quite similar, as seen by the data comparison.
Figure 9

The full two-dimensional fingerprint plots for mol­ecules (IIA) and (IIB), showing all inter­actions (a) and those delineated into N⋯H/H⋯N (b), C⋯H/H⋯C (c) and O⋯H/H⋯O (d) inter­actions. The d i and d e values are the closest inter­nal and external distances (in Å) from given points on the Hirshfeld surface.

Table 6

Percentage contributions of inter­atomic contacts to the Hirshfeld surface for compound (II)

Contact% contribution for IIA% contribution for IIB
H⋯H27.623.1
N⋯H/H⋯N25.228.3
C⋯H/H⋯C15.221.2
O⋯H/H⋯O11.48.8
N⋯C/C⋯N8.66.7
C⋯C6.87.5
N⋯N2.12.8
N⋯O/O⋯N1.70.6
C⋯O/O⋯C1.30.9

Database survey

A search of the Cambridge Structural Database (CSD, Version 5.42, update of September 2021; Groom et al., 2016 ▸) gave eleven compounds closely related to the title compounds, viz. CSD refcodes YAXQAT (I) (Mamedov et al., 2022 ▸), OZAKOS (II) (Naghiyev et al., 2021 ▸), JEBREQ (III) (Mohana et al., 2017 ▸), JEBRAM (IV) (Mohana et al., 2017 ▸), SETWUK (V) (Suresh et al., 2007 ▸), SETWOE (VI) (Suresh et al., 2007 ▸), IQEFOC (VII) (Naghiyev et al., 2021a ▸), MOKBUL (VIII) (Mohamed et al., 2014 ▸), PAVQIO (IX) (Al-Said et al., 2012 ▸), YIZGOE01 (X) (Jia & Tu, 2008 ▸) and YIBZAL (XI) (Eyduran et al., 2007 ▸). In the crystal of (I) (space group: Pc), the two mol­ecules in the asymmetric unit are joined together by N—H⋯O hydrogen bonds, forming a dimer with an (16) ring motif. N—H⋯O and N—H⋯N hydrogen bonds link the dimers, generating chains along the c-axis direction, which are connected by C—Br⋯π inter­actions. In (II) (space group: Pc), inter­molecular N—H⋯N and C—H⋯N hydrogen bonds, as well as N—H⋯π and C—H⋯π inter­actions, connect mol­ecules in the crystal, generating a 3D network. In both (III) (space group: P ) and (IV) (space group: P ), a supra­molecular homosynthon [ (8) ring motif] is formed through N—H⋯N hydrogen bonds. The mol­ecular structures are further stabilized by π–π stacking, and C=O⋯π, C—H⋯O and C—H⋯Cl inter­actions. In (V) (space group: P21/n), the crystal structure is stabilized by inter­molecular C—H⋯F and C—H⋯π inter­actions, and in (VI) (space group: P21/c), by inter­molecular C—H⋯O and C—H⋯π inter­actions. In (VII) (space group: Cc), inter­molecular N—H⋯N and C—H⋯N hydrogen bonds form mol­ecular sheets parallel to the (110) and (110) planes, crossing each other. Adjacent mol­ecules are further linked by C—H⋯π inter­actions, which form zigzag chains propagating parallel to [100]. The compound (VIII) (space group: Pca21) crystallizes with two independent mol­ecules, A and B, in the asymmetric unit. In the crystal, mol­ecules A and B are linked by N—H⋯S, N—H⋯N and C—H⋯S hydrogen bonds, forming a three-dimensional network. In (IX) (space group: P21/c), mol­ecules are linked into a chain along the b-axis direction via C—H⋯O inter­actions. In (X) (space group: P ), the crystal packing is stabilized by inter­molecular N—H⋯N, O—H⋯O and N—H⋯O hydrogen bonds. In (XI) (space group: P21/c), the mol­ecules form centrosymmetric dimers via N—H⋯S hydrogen bonds.

Synthesis and crystallization

Compounds (I) and (II) were synthesized using reported procedures [Mamedov et al. (2020 ▸) and Soto et al. (1981 ▸), respectively]. Colorless crystals of (I) were obtained at room temperature upon slow evaporation of a homogeneous methanol solution, while colorless needle-like crystals of (II) were obtained at room temperature upon slow evaporation from an ethanol/water (3:1) homogeneous solution.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 7 ▸. In (I), the H atoms were placed at calculated positions (C—H = 0.95–1.00 Å) and refined as riding with U iso(H) = 1.2U eq(C) or 1.5U eq(C-meth­yl). The N-bound H atoms and the H atoms of the water mol­ecule located at the coordinates (0.5, y, 0.25) were found in a difference-Fourier map, and refined freely [N2—H2A = 0.82 (2), N2—H2B = 0.84 (2) Å, and O2—H2C = 0.849 (10), O2—H2C(−x + 1, y, −z +  ) = 0.849 (10) Å, with U iso(H) = 1.2 or 1.5U eq(N, O). The DFIX instruction was applied to constrain the distance O2—H2C. The Br1 atom is disordered over two positions with refined occupancies of 0.59 (2) and 0.41 (2).
Table 7

Experimental details

 (I)(II)
Crystal data
Chemical formula2C18H14BrN3O·H2OC13H9N5O
M r 754.48251.25
Crystal system, space groupMonoclinic, C2/c Triclinic, P
Temperature (K)100100
a, b, c (Å)27.539 (3), 6.3430 (6), 21.3540 (19)8.6444 (1), 8.9104 (2), 16.0902 (2)
α, β, γ (°)90, 118.170 (12), 9079.196 (1), 86.485 (1), 69.003 (2)
V3)3288.2 (6)1136.52 (4)
Z 44
Radiation typeSynchrotron, λ = 0.74500 ÅMo Kα
μ (mm−1)2.830.10
Crystal size (mm)0.10 × 0.07 × 0.050.15 × 0.12 × 0.06
 
Data collection
DiffractometerRayonix SX-165 CCDXtaLAB Synergy, Dualflex, HyPix
Absorption correctionMulti-scan (SCALA; Evans, 2006)Multi-scan (CrysAlis PRO; Rigaku OD, 2021)
T min, T max 0.742, 0.8510.972, 0.980
No. of measured, independent and observed [I > 2σ(I)] reflections28485, 4492, 404788754, 9666, 8561
R int 0.0250.029
(sin θ/λ)max−1)0.6920.816
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.031, 0.086, 1.060.039, 0.118, 1.03
No. of reflections44929666
No. of parameters233363
No. of restraints20
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.45, −0.430.54, −0.31

Computer programs: Marccd (Doyle, 2011 ▸), CrysAlis PRO (Rigaku OD, 2021 ▸), iMosflm (Battye et al., 2011 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), and PLATON (Spek, 2020 ▸).

In (II), the H atoms were placed at calculated positions (C—H = 0.95 Å) and refined using a riding model with U iso(H) = 1.2U eq(C). N-bound H atoms were found in a difference Fourier map and refined freely [N2—H2A = 0.913 (13), N2—H2B = 0.916 (14), N5—H5A = 0.897 (14) and N5—H5B = 0.930 (14) Å for mol­ecule IIA, and N2′—H2A′ = 0.898 (13), N2′—H2B′ = 0.902 (15), N5′—H5A′ = 0.887 (15) and N5′—H5B′ = 0.889 (12) Å for mol­ecule IIB]. Crystal structure: contains datablock(s) I, II, global. DOI: 10.1107/S2056989022007356/tx2055sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989022007356/tx2055Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989022007356/tx2055Isup4.cml Structure factors: contains datablock(s) II. DOI: 10.1107/S2056989022007356/tx2055IIsup3.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989022007356/tx2055IIsup5.cml CCDC references: 2190978, 2190977 Additional supporting information: crystallographic information; 3D view; checkCIF report
2C18H14BrN3O·H2OF(000) = 1528
Mr = 754.48Dx = 1.524 Mg m3
Monoclinic, C2/cSynchrotron radiation, λ = 0.74500 Å
a = 27.539 (3) ÅCell parameters from 1000 reflections
b = 6.3430 (6) Åθ = 1.8–24.0°
c = 21.3540 (19) ŵ = 2.83 mm1
β = 118.170 (12)°T = 100 K
V = 3288.2 (6) Å3Prism, yellow
Z = 40.10 × 0.07 × 0.05 mm
Rayonix SX-165 CCD diffractometer4047 reflections with I > 2σ(I)
/f scanRint = 0.025
Absorption correction: multi-scan (SCALA; Evans, 2006)θmax = 31.0°, θmin = 1.8°
Tmin = 0.742, Tmax = 0.851h = −38→38
28485 measured reflectionsk = −8→8
4492 independent reflectionsl = −29→29
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.031w = 1/[σ2(Fo2) + (0.0485P)2 + 2.5862P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.086(Δ/σ)max = 0.001
S = 1.06Δρmax = 0.45 e Å3
4492 reflectionsΔρmin = −0.43 e Å3
233 parametersExtinction correction: SHELXL-2018/3 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
2 restraintsExtinction coefficient: 0.0066 (5)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
Br10.58033 (10)1.0754 (4)0.04138 (12)0.0362 (3)0.59 (2)
Br1A0.5838 (2)1.1121 (17)0.0450 (2)0.0521 (7)0.41 (2)
O10.61090 (5)0.37633 (17)0.30715 (7)0.0337 (3)
N10.63725 (5)0.65818 (18)0.38065 (6)0.0224 (2)
N20.66784 (6)0.9297 (2)0.46401 (7)0.0259 (2)
H2A0.6410 (10)0.904 (3)0.4699 (12)0.031*
H2B0.6843 (9)1.044 (3)0.4797 (11)0.031*
N30.78997 (5)1.13330 (19)0.47344 (7)0.0273 (2)
C20.67632 (6)0.8155 (2)0.41704 (7)0.0221 (2)
C30.71957 (6)0.8467 (2)0.40309 (7)0.0228 (2)
C40.72370 (6)0.7256 (2)0.34490 (7)0.0222 (2)
H40.7633850.7163450.3568210.027*
C50.70242 (6)0.5023 (2)0.34527 (8)0.0248 (3)
H5A0.7005330.4224490.3043380.030*
H5B0.7287080.4289330.3892380.030*
C60.64645 (6)0.5040 (2)0.34127 (8)0.0248 (3)
C70.58549 (6)0.6519 (2)0.38258 (7)0.0249 (3)
C80.54681 (7)0.8076 (3)0.34787 (9)0.0339 (3)
H80.5542010.9183090.3236260.041*
C90.49690 (8)0.7984 (3)0.34924 (11)0.0446 (4)
H90.4701560.9055290.3264860.053*
C100.48580 (7)0.6351 (3)0.38334 (11)0.0442 (4)
H100.4513080.6294900.3832990.053*
C110.52464 (7)0.4800 (3)0.41753 (10)0.0382 (4)
H110.5168060.3677890.4408490.046*
C120.57518 (7)0.4881 (2)0.41780 (9)0.0304 (3)
H120.6022850.3829640.4417290.037*
C130.75857 (6)1.0032 (2)0.44177 (7)0.0230 (2)
C140.69159 (6)0.8247 (2)0.27130 (7)0.0222 (2)
C150.69605 (6)0.7419 (2)0.21353 (8)0.0284 (3)
H150.7211230.6299450.2209940.034*
C160.66441 (7)0.8207 (3)0.14545 (8)0.0320 (3)
H160.6670740.7617900.1062810.038*
C170.62892 (6)0.9867 (3)0.13569 (8)0.0293 (3)
C180.62500 (6)1.0777 (2)0.19181 (8)0.0264 (3)
H180.6014361.1949730.1843830.032*
C190.65621 (6)0.9943 (2)0.25941 (7)0.0235 (3)
H190.6533451.0542660.2983000.028*
O20.5000000.2217 (3)0.2500000.0497 (5)
H2C0.5274 (8)0.305 (4)0.2670 (16)0.075*
U11U22U33U12U13U23
Br10.0326 (4)0.0536 (6)0.0240 (3)0.0061 (6)0.0149 (3)0.0099 (3)
Br1A0.0486 (12)0.0873 (19)0.0298 (7)0.0336 (9)0.0262 (7)0.0238 (8)
O10.0301 (6)0.0284 (5)0.0446 (6)−0.0049 (4)0.0193 (5)−0.0142 (4)
N10.0219 (5)0.0217 (5)0.0239 (5)−0.0008 (4)0.0109 (4)−0.0025 (4)
N20.0274 (6)0.0263 (5)0.0266 (6)−0.0044 (5)0.0149 (5)−0.0058 (4)
N30.0290 (6)0.0255 (5)0.0276 (6)−0.0020 (5)0.0133 (5)−0.0005 (4)
C20.0238 (6)0.0203 (5)0.0205 (5)0.0009 (4)0.0090 (5)0.0005 (4)
C30.0235 (6)0.0221 (5)0.0216 (6)−0.0002 (5)0.0096 (5)−0.0003 (4)
C40.0220 (6)0.0212 (5)0.0239 (6)0.0014 (4)0.0112 (5)−0.0004 (4)
C50.0259 (7)0.0200 (5)0.0298 (6)0.0031 (5)0.0142 (5)0.0004 (5)
C60.0259 (7)0.0204 (5)0.0278 (6)0.0009 (5)0.0126 (5)−0.0015 (5)
C70.0208 (6)0.0277 (6)0.0254 (6)−0.0014 (5)0.0102 (5)−0.0055 (5)
C80.0285 (8)0.0374 (8)0.0329 (7)0.0058 (6)0.0122 (6)−0.0010 (6)
C90.0278 (8)0.0549 (10)0.0469 (10)0.0111 (7)0.0143 (7)−0.0055 (8)
C100.0258 (8)0.0594 (11)0.0507 (10)−0.0063 (7)0.0207 (8)−0.0189 (9)
C110.0336 (8)0.0426 (9)0.0448 (9)−0.0120 (7)0.0238 (7)−0.0119 (7)
C120.0277 (7)0.0303 (7)0.0350 (7)−0.0053 (6)0.0162 (6)−0.0049 (6)
C130.0247 (6)0.0229 (6)0.0221 (6)0.0020 (5)0.0116 (5)0.0021 (5)
C140.0230 (6)0.0213 (5)0.0241 (6)−0.0007 (5)0.0125 (5)−0.0010 (4)
C150.0299 (7)0.0300 (6)0.0290 (7)0.0052 (5)0.0169 (6)−0.0007 (5)
C160.0325 (8)0.0429 (8)0.0259 (7)0.0041 (6)0.0182 (6)−0.0009 (6)
C170.0271 (7)0.0396 (7)0.0227 (6)0.0028 (6)0.0132 (5)0.0068 (6)
C180.0275 (7)0.0263 (6)0.0268 (6)0.0026 (5)0.0139 (6)0.0036 (5)
C190.0274 (7)0.0218 (6)0.0232 (6)0.0002 (5)0.0135 (5)−0.0009 (5)
O20.0349 (10)0.0329 (9)0.0631 (13)0.0000.0082 (9)0.000
Br1—C171.902 (3)C8—C91.390 (2)
Br1A—C171.912 (4)C8—H80.9500
O1—C61.2131 (18)C9—C101.381 (3)
N1—C61.3886 (17)C9—H90.9500
N1—C21.4027 (17)C10—C111.381 (3)
N1—C71.4460 (18)C10—H100.9500
N2—C21.3440 (17)C11—C121.390 (2)
N2—H2A0.82 (2)C11—H110.9500
N2—H2B0.84 (2)C12—H120.9500
N3—C131.1551 (19)C14—C191.3921 (18)
C2—C31.3716 (19)C14—C151.3986 (18)
C3—C131.4080 (19)C15—C161.388 (2)
C3—C41.5101 (18)C15—H150.9500
C4—C141.5278 (19)C16—C171.384 (2)
C4—C51.5347 (18)C16—H160.9500
C4—H41.0000C17—C181.380 (2)
C5—C61.5031 (19)C18—C191.390 (2)
C5—H5A0.9900C18—H180.9500
C5—H5B0.9900C19—H190.9500
C7—C81.383 (2)O2—H2C0.849 (10)
C7—C121.389 (2)O2—H2Ci0.849 (10)
C6—N1—C2121.67 (12)C10—C9—H9119.7
C6—N1—C7117.52 (11)C8—C9—H9119.7
C2—N1—C7120.82 (11)C9—C10—C11120.26 (16)
C2—N2—H2A119.6 (14)C9—C10—H10119.9
C2—N2—H2B120.8 (15)C11—C10—H10119.9
H2A—N2—H2B118 (2)C10—C11—C12120.00 (17)
N2—C2—C3123.97 (13)C10—C11—H11120.0
N2—C2—N1116.02 (12)C12—C11—H11120.0
C3—C2—N1120.00 (12)C7—C12—C11119.05 (16)
C2—C3—C13118.33 (12)C7—C12—H12120.5
C2—C3—C4121.03 (12)C11—C12—H12120.5
C13—C3—C4120.55 (12)N3—C13—C3179.02 (15)
C3—C4—C14113.92 (11)C19—C14—C15118.33 (13)
C3—C4—C5106.75 (11)C19—C14—C4121.39 (11)
C14—C4—C5110.35 (11)C15—C14—C4120.26 (12)
C3—C4—H4108.6C16—C15—C14121.04 (13)
C14—C4—H4108.6C16—C15—H15119.5
C5—C4—H4108.6C14—C15—H15119.5
C6—C5—C4112.13 (11)C17—C16—C15118.77 (13)
C6—C5—H5A109.2C17—C16—H16120.6
C4—C5—H5A109.2C15—C16—H16120.6
C6—C5—H5B109.2C18—C17—C16121.80 (13)
C4—C5—H5B109.2C18—C17—Br1119.43 (14)
H5A—C5—H5B107.9C16—C17—Br1118.58 (14)
O1—C6—N1120.51 (13)C18—C17—Br1A115.2 (2)
O1—C6—C5122.98 (12)C16—C17—Br1A123.0 (2)
N1—C6—C5116.49 (12)C17—C18—C19118.64 (13)
C8—C7—C12121.46 (14)C17—C18—H18120.7
C8—C7—N1119.04 (13)C19—C18—H18120.7
C12—C7—N1119.49 (13)C18—C19—C14121.34 (12)
C7—C8—C9118.56 (17)C18—C19—H19119.3
C7—C8—H8120.7C14—C19—H19119.3
C9—C8—H8120.7H2C—O2—H2Ci103 (4)
C10—C9—C8120.66 (17)
C6—N1—C2—N2−167.48 (13)C12—C7—C8—C90.5 (2)
C7—N1—C2—N212.90 (18)N1—C7—C8—C9179.12 (14)
C6—N1—C2—C313.26 (19)C7—C8—C9—C10−1.3 (3)
C7—N1—C2—C3−166.35 (13)C8—C9—C10—C110.9 (3)
N2—C2—C3—C132.1 (2)C9—C10—C11—C120.1 (3)
N1—C2—C3—C13−178.68 (12)C8—C7—C12—C110.5 (2)
N2—C2—C3—C4−174.42 (13)N1—C7—C12—C11−178.07 (13)
N1—C2—C3—C44.77 (19)C10—C11—C12—C7−0.8 (2)
C2—C3—C4—C1485.13 (15)C3—C4—C14—C19−8.24 (18)
C13—C3—C4—C14−91.35 (15)C5—C4—C14—C19111.81 (14)
C2—C3—C4—C5−36.93 (16)C3—C4—C14—C15173.58 (13)
C13—C3—C4—C5146.59 (12)C5—C4—C14—C15−66.37 (16)
C3—C4—C5—C652.57 (15)C19—C14—C15—C16−2.6 (2)
C14—C4—C5—C6−71.70 (14)C4—C14—C15—C16175.64 (14)
C2—N1—C6—O1−176.04 (13)C14—C15—C16—C171.3 (2)
C7—N1—C6—O13.6 (2)C15—C16—C17—C181.2 (2)
C2—N1—C6—C55.58 (18)C15—C16—C17—Br1−173.74 (14)
C7—N1—C6—C5−174.79 (12)C15—C16—C17—Br1A179.2 (4)
C4—C5—C6—O1141.73 (14)C16—C17—C18—C19−2.4 (2)
C4—C5—C6—N1−39.93 (17)Br1—C17—C18—C19172.52 (13)
C6—N1—C7—C8−110.24 (15)Br1A—C17—C18—C19179.5 (3)
C2—N1—C7—C869.39 (18)C17—C18—C19—C141.1 (2)
C6—N1—C7—C1268.39 (17)C15—C14—C19—C181.4 (2)
C2—N1—C7—C12−111.98 (15)C4—C14—C19—C18−176.83 (13)
D—H···AD—HH···AD···AD—H···A
N2—H2A···Br1ii0.82 (2)2.75 (2)3.507 (3)154.4 (19)
N2—H2A···Br1Aii0.82 (2)2.73 (2)3.493 (4)155.1 (19)
N2—H2B···N3iii0.84 (2)2.24 (2)3.0583 (18)165 (2)
C5—H5B···N3iv0.992.593.5426 (19)160
C8—H8···O2v0.952.493.223 (2)134
C12—H12···N3vi0.952.653.411 (2)138
C16—H16···N3vii0.952.623.5283 (19)160
O2—H2C···O10.85 (1)2.09 (2)2.8739 (14)153 (3)
C13H9N5OZ = 4
Mr = 251.25F(000) = 520
Triclinic, P1Dx = 1.468 Mg m3
a = 8.6444 (1) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.9104 (2) ÅCell parameters from 60859 reflections
c = 16.0902 (2) Åθ = 2.5–35.6°
α = 79.196 (1)°µ = 0.10 mm1
β = 86.485 (1)°T = 100 K
γ = 69.003 (2)°Prism, colourless
V = 1136.52 (4) Å30.15 × 0.12 × 0.06 mm
XtaLAB Synergy, Dualflex, HyPix diffractometer8561 reflections with I > 2σ(I)
Radiation source: micro-focus sealed X-ray tubeRint = 0.029
φ and ω scansθmax = 35.4°, θmin = 2.5°
Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2021)h = −14→13
Tmin = 0.972, Tmax = 0.980k = −14→14
88754 measured reflectionsl = −25→26
9666 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.118w = 1/[σ2(Fo2) + (0.0719P)2 + 0.2449P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
9666 reflectionsΔρmax = 0.54 e Å3
363 parametersΔρmin = −0.31 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C20.49789 (8)0.24937 (8)0.36884 (4)0.01381 (11)
C30.53566 (8)0.37133 (8)0.30738 (4)0.01370 (11)
C40.48775 (8)0.53309 (8)0.31837 (4)0.01268 (10)
C50.39202 (8)0.57960 (7)0.38978 (4)0.01268 (10)
C60.33478 (8)0.46771 (8)0.44558 (4)0.01249 (10)
C70.63071 (9)0.31152 (8)0.23688 (4)0.01525 (11)
C80.53483 (8)0.65513 (8)0.25605 (4)0.01337 (11)
C90.50427 (10)0.67233 (8)0.16981 (4)0.01755 (12)
H90.4538110.6056950.1510800.021*
C100.54766 (11)0.78697 (9)0.11127 (5)0.02109 (14)
H100.5264890.7982390.0527600.025*
C110.62188 (10)0.88513 (9)0.13807 (5)0.02022 (13)
H110.6522790.9624600.0979610.024*
C120.65120 (9)0.86934 (8)0.22373 (5)0.01812 (12)
H120.7005590.9370290.2422770.022*
C130.60864 (9)0.75488 (8)0.28249 (4)0.01520 (11)
H130.6297970.7443300.3409460.018*
C140.34605 (8)0.74045 (8)0.40775 (4)0.01414 (11)
N10.38849 (7)0.30955 (7)0.43300 (4)0.01336 (10)
N20.33246 (8)0.19935 (7)0.49062 (4)0.01632 (11)
H2A0.3085 (16)0.1388 (16)0.4569 (8)0.027 (3)*
H2B0.4202 (17)0.1317 (16)0.5247 (8)0.029 (3)*
N30.70345 (9)0.25693 (8)0.18045 (4)0.02017 (12)
N40.31176 (8)0.86837 (7)0.42590 (4)0.01799 (11)
N50.23470 (8)0.50589 (7)0.51032 (4)0.01504 (10)
H5A0.1960 (17)0.4294 (17)0.5378 (8)0.030 (3)*
H5B0.1916 (17)0.6134 (17)0.5190 (9)0.031 (3)*
O10.55120 (7)0.10126 (6)0.36855 (3)0.01817 (10)
C2'0.97520 (8)0.16536 (7)0.35832 (4)0.01262 (11)
C3'1.02820 (8)0.27412 (7)0.29632 (4)0.01245 (10)
C4'1.08425 (8)0.23854 (7)0.21668 (4)0.01188 (10)
C5'1.09636 (8)0.08798 (7)0.19804 (4)0.01221 (10)
C6'1.04791 (8)−0.02418 (7)0.25855 (4)0.01190 (10)
C7'1.02248 (9)0.42022 (8)0.32183 (4)0.01393 (11)
C8'1.12573 (5)0.36189 (4)0.15294 (3)0.01286 (11)
C9'1.00656 (4)0.51639 (5)0.13008 (3)0.01666 (12)
H9'0.8997830.5418830.1549790.020*
C10'1.04361 (6)0.63360 (4)0.07079 (3)0.02107 (14)
H10'0.9621580.7391940.0551670.025*
C11'1.19983 (6)0.59630 (5)0.03436 (3)0.02295 (15)
H11'1.2251530.676408−0.0061580.028*
C12'1.31900 (5)0.44180 (6)0.05723 (3)0.02250 (15)
H12'1.4257760.4163110.0323290.027*
C13'1.28195 (5)0.32459 (4)0.11652 (3)0.01777 (12)
H13'1.3634040.2189980.1321410.021*
C14'1.14171 (9)0.04541 (8)0.11662 (4)0.01460 (11)
N1'0.98460 (7)0.01996 (6)0.33357 (3)0.01239 (10)
N2'0.93299 (8)−0.09390 (7)0.39068 (4)0.01582 (11)
H2A'0.9758 (16)−0.1024 (15)0.4416 (8)0.022 (3)*
H2B'0.8215 (18)−0.0479 (17)0.3919 (9)0.032 (3)*
N3'1.01668 (9)0.53667 (7)0.34567 (4)0.01855 (12)
N4'1.17585 (9)0.00229 (8)0.05229 (4)0.02098 (12)
N5'1.05814 (8)−0.16991 (7)0.24521 (4)0.01556 (11)
H5A'1.0282 (19)−0.2369 (18)0.2854 (9)0.039 (4)*
H5B'1.0896 (15)−0.2001 (15)0.1954 (8)0.023 (3)*
O1'0.92331 (7)0.18943 (6)0.42983 (3)0.01749 (10)
U11U22U33U12U13U23
C20.0160 (3)0.0122 (2)0.0135 (2)−0.0053 (2)0.0029 (2)−0.00348 (19)
C30.0169 (3)0.0119 (2)0.0126 (2)−0.0055 (2)0.0032 (2)−0.00320 (19)
C40.0144 (3)0.0120 (2)0.0119 (2)−0.0050 (2)0.00073 (19)−0.00226 (18)
C50.0156 (3)0.0106 (2)0.0122 (2)−0.0051 (2)0.00160 (19)−0.00266 (18)
C60.0145 (3)0.0116 (2)0.0115 (2)−0.0046 (2)0.00057 (19)−0.00262 (18)
C70.0173 (3)0.0134 (2)0.0150 (3)−0.0056 (2)0.0018 (2)−0.0027 (2)
C80.0160 (3)0.0117 (2)0.0121 (2)−0.0049 (2)0.00167 (19)−0.00189 (18)
C90.0234 (3)0.0156 (3)0.0129 (3)−0.0059 (2)−0.0002 (2)−0.0026 (2)
C100.0292 (4)0.0173 (3)0.0127 (3)−0.0047 (3)0.0022 (2)−0.0006 (2)
C110.0244 (3)0.0141 (3)0.0183 (3)−0.0046 (2)0.0068 (2)0.0002 (2)
C120.0199 (3)0.0147 (3)0.0204 (3)−0.0078 (2)0.0051 (2)−0.0028 (2)
C130.0177 (3)0.0144 (3)0.0146 (3)−0.0073 (2)0.0020 (2)−0.0025 (2)
C140.0156 (3)0.0135 (2)0.0138 (2)−0.0059 (2)0.0018 (2)−0.00275 (19)
N10.0169 (2)0.0103 (2)0.0131 (2)−0.00544 (18)0.00382 (18)−0.00272 (17)
N20.0212 (3)0.0126 (2)0.0161 (2)−0.0083 (2)0.0051 (2)−0.00171 (18)
N30.0222 (3)0.0194 (3)0.0181 (3)−0.0063 (2)0.0046 (2)−0.0052 (2)
N40.0207 (3)0.0149 (2)0.0200 (3)−0.0077 (2)0.0039 (2)−0.0052 (2)
N50.0189 (3)0.0128 (2)0.0133 (2)−0.00552 (19)0.00438 (19)−0.00362 (17)
O10.0235 (2)0.0112 (2)0.0197 (2)−0.00596 (18)0.00526 (19)−0.00440 (16)
C2'0.0176 (3)0.0089 (2)0.0115 (2)−0.0048 (2)0.00219 (19)−0.00237 (18)
C3'0.0179 (3)0.0091 (2)0.0115 (2)−0.0061 (2)0.00252 (19)−0.00242 (18)
C4'0.0144 (3)0.0097 (2)0.0116 (2)−0.00459 (19)0.00144 (19)−0.00171 (18)
C5'0.0168 (3)0.0100 (2)0.0101 (2)−0.0053 (2)0.00269 (19)−0.00226 (18)
C6'0.0149 (3)0.0095 (2)0.0115 (2)−0.00460 (19)0.00159 (19)−0.00249 (18)
C7'0.0186 (3)0.0113 (2)0.0123 (2)−0.0063 (2)0.0015 (2)−0.00144 (19)
C8'0.0178 (3)0.0108 (2)0.0112 (2)−0.0070 (2)0.00243 (19)−0.00177 (18)
C9'0.0212 (3)0.0126 (2)0.0142 (3)−0.0052 (2)0.0010 (2)0.0004 (2)
C10'0.0331 (4)0.0148 (3)0.0148 (3)−0.0099 (3)−0.0004 (3)0.0017 (2)
C11'0.0400 (4)0.0200 (3)0.0153 (3)−0.0195 (3)0.0056 (3)−0.0022 (2)
C12'0.0300 (4)0.0217 (3)0.0226 (3)−0.0175 (3)0.0122 (3)−0.0076 (3)
C13'0.0199 (3)0.0152 (3)0.0208 (3)−0.0094 (2)0.0068 (2)−0.0051 (2)
C14'0.0190 (3)0.0113 (2)0.0133 (2)−0.0057 (2)0.0020 (2)−0.00160 (19)
N1'0.0184 (2)0.0086 (2)0.0109 (2)−0.00621 (18)0.00355 (17)−0.00196 (16)
N2'0.0235 (3)0.0116 (2)0.0138 (2)−0.0093 (2)0.0063 (2)−0.00122 (17)
N3'0.0277 (3)0.0133 (2)0.0168 (2)−0.0098 (2)0.0017 (2)−0.00329 (19)
N4'0.0300 (3)0.0178 (3)0.0148 (2)−0.0079 (2)0.0039 (2)−0.0045 (2)
N5'0.0239 (3)0.0105 (2)0.0146 (2)−0.0085 (2)0.0047 (2)−0.00454 (18)
O1'0.0286 (3)0.0125 (2)0.0116 (2)−0.00763 (18)0.00628 (18)−0.00403 (15)
C2—O11.2330 (8)C2'—O1'1.2376 (7)
C2—N11.4044 (8)C2'—N1'1.3992 (8)
C2—C31.4412 (9)C2'—C3'1.4296 (8)
C3—C41.3925 (9)C3'—C4'1.3939 (9)
C3—C71.4300 (9)C3'—C7'1.4204 (9)
C4—C51.4117 (9)C4'—C5'1.3954 (8)
C4—C81.4872 (9)C4'—C8'1.4843
C5—C61.4172 (9)C5'—C6'1.4167 (8)
C5—C141.4243 (9)C5'—C14'1.4251 (9)
C6—N51.3268 (8)C6'—N5'1.3266 (8)
C6—N11.3672 (8)C6'—N1'1.3617 (8)
C7—N31.1545 (9)C7'—N3'1.1558 (8)
C8—C91.3982 (9)C8'—C9'1.3900
C8—C131.3999 (9)C8'—C13'1.3900
C9—C101.3935 (10)C9'—C10'1.3900
C9—H90.9500C9'—H9'0.9500
C10—C111.3928 (12)C10'—C11'1.3900
C10—H100.9500C10'—H10'0.9500
C11—C121.3887 (11)C11'—C12'1.3900
C11—H110.9500C11'—H11'0.9500
C12—C131.3907 (9)C12'—C13'1.3900
C12—H120.9500C12'—H12'0.9500
C13—H130.9500C13'—H13'0.9500
C14—N41.1595 (9)C14'—N4'1.1561 (9)
N1—N21.4151 (8)N1'—N2'1.4132 (7)
N2—H2A0.913 (13)N2'—H2A'0.898 (13)
N2—H2B0.916 (14)N2'—H2B'0.902 (15)
N5—H5A0.897 (14)N5'—H5A'0.887 (15)
N5—H5B0.930 (14)N5'—H5B'0.889 (12)
O1—C2—N1118.98 (6)O1'—C2'—N1'118.89 (6)
O1—C2—C3125.76 (6)O1'—C2'—C3'125.90 (6)
N1—C2—C3115.25 (5)N1'—C2'—C3'115.20 (5)
C4—C3—C7123.26 (6)C4'—C3'—C7'122.09 (6)
C4—C3—C2121.92 (6)C4'—C3'—C2'122.48 (5)
C7—C3—C2114.77 (5)C7'—C3'—C2'115.42 (5)
C3—C4—C5118.58 (6)C3'—C4'—C5'118.84 (5)
C3—C4—C8120.96 (6)C3'—C4'—C8'119.79 (5)
C5—C4—C8120.46 (5)C5'—C4'—C8'121.35 (5)
C4—C5—C6120.81 (6)C4'—C5'—C6'120.19 (5)
C4—C5—C14121.79 (6)C4'—C5'—C14'122.74 (6)
C6—C5—C14117.38 (6)C6'—C5'—C14'116.82 (5)
N5—C6—N1117.80 (6)N5'—C6'—N1'117.96 (6)
N5—C6—C5124.17 (6)N5'—C6'—C5'123.20 (6)
N1—C6—C5118.01 (6)N1'—C6'—C5'118.83 (5)
N3—C7—C3176.29 (7)N3'—C7'—C3'177.41 (7)
C9—C8—C13119.10 (6)C9'—C8'—C13'120.0
C9—C8—C4120.01 (6)C9'—C8'—C4'119.3
C13—C8—C4120.89 (6)C13'—C8'—C4'120.7
C10—C9—C8120.16 (7)C8'—C9'—C10'120.0
C10—C9—H9119.9C8'—C9'—H9'120.0
C8—C9—H9119.9C10'—C9'—H9'120.0
C11—C10—C9120.37 (7)C11'—C10'—C9'120.0
C11—C10—H10119.8C11'—C10'—H10'120.0
C9—C10—H10119.8C9'—C10'—H10'120.0
C12—C11—C10119.63 (6)C10'—C11'—C12'120.0
C12—C11—H11120.2C10'—C11'—H11'120.0
C10—C11—H11120.2C12'—C11'—H11'120.0
C11—C12—C13120.31 (7)C13'—C12'—C11'120.0
C11—C12—H12119.8C13'—C12'—H12'120.0
C13—C12—H12119.8C11'—C12'—H12'120.0
C12—C13—C8120.42 (6)C12'—C13'—C8'120.0
C12—C13—H13119.8C12'—C13'—H13'120.0
C8—C13—H13119.8C8'—C13'—H13'120.0
N4—C14—C5176.96 (7)N4'—C14'—C5'175.70 (7)
C6—N1—C2124.55 (5)C6'—N1'—C2'124.25 (5)
C6—N1—N2116.97 (5)C6'—N1'—N2'116.70 (5)
C2—N1—N2118.46 (5)C2'—N1'—N2'118.98 (5)
N1—N2—H2A103.6 (8)N1'—N2'—H2A'107.0 (8)
N1—N2—H2B107.6 (8)N1'—N2'—H2B'104.9 (9)
H2A—N2—H2B108.0 (11)H2A'—N2'—H2B'110.0 (12)
C6—N5—H5A117.0 (9)C6'—N5'—H5A'120.0 (10)
C6—N5—H5B119.9 (8)C6'—N5'—H5B'121.0 (8)
H5A—N5—H5B122.0 (12)H5A'—N5'—H5B'118.9 (12)
O1—C2—C3—C4−171.43 (7)O1'—C2'—C3'—C4'−179.57 (7)
N1—C2—C3—C49.53 (10)N1'—C2'—C3'—C4'0.40 (10)
O1—C2—C3—C76.26 (10)O1'—C2'—C3'—C7'1.41 (10)
N1—C2—C3—C7−172.78 (6)N1'—C2'—C3'—C7'−178.62 (6)
C7—C3—C4—C5179.14 (6)C7'—C3'—C4'—C5'175.94 (6)
C2—C3—C4—C5−3.36 (10)C2'—C3'—C4'—C5'−3.01 (10)
C7—C3—C4—C8−0.34 (10)C7'—C3'—C4'—C8'−5.56 (10)
C2—C3—C4—C8177.16 (6)C2'—C3'—C4'—C8'175.49 (6)
C3—C4—C5—C6−4.87 (10)C3'—C4'—C5'—C6'1.73 (10)
C8—C4—C5—C6174.61 (6)C8'—C4'—C5'—C6'−176.75 (5)
C3—C4—C5—C14176.52 (6)C3'—C4'—C5'—C14'175.69 (6)
C8—C4—C5—C14−3.99 (10)C8'—C4'—C5'—C14'−2.79 (10)
C4—C5—C6—N5−174.96 (6)C4'—C5'—C6'—N5'−179.18 (6)
C14—C5—C6—N53.70 (10)C14'—C5'—C6'—N5'6.51 (10)
C4—C5—C6—N16.35 (9)C4'—C5'—C6'—N1'2.15 (10)
C14—C5—C6—N1−174.99 (6)C14'—C5'—C6'—N1'−172.16 (6)
C3—C4—C8—C950.86 (9)C3'—C4'—C8'—C9'−56.14 (7)
C5—C4—C8—C9−128.61 (7)C5'—C4'—C8'—C9'122.33 (6)
C3—C4—C8—C13−129.66 (7)C3'—C4'—C8'—C13'123.55 (6)
C5—C4—C8—C1350.87 (9)C5'—C4'—C8'—C13'−57.99 (7)
C13—C8—C9—C100.27 (10)C13'—C8'—C9'—C10'0.0
C4—C8—C9—C10179.76 (6)C4'—C8'—C9'—C10'179.7
C8—C9—C10—C110.08 (11)C8'—C9'—C10'—C11'0.0
C9—C10—C11—C12−0.60 (12)C9'—C10'—C11'—C12'0.0
C10—C11—C12—C130.77 (11)C10'—C11'—C12'—C13'0.0
C11—C12—C13—C8−0.43 (11)C11'—C12'—C13'—C8'0.0
C9—C8—C13—C12−0.10 (10)C9'—C8'—C13'—C12'0.0
C4—C8—C13—C12−179.58 (6)C4'—C8'—C13'—C12'−179.7
N5—C6—N1—C2−178.25 (6)N5'—C6'—N1'—C2'176.16 (6)
C5—C6—N1—C20.53 (10)C5'—C6'—N1'—C2'−5.10 (10)
N5—C6—N1—N2−0.09 (9)N5'—C6'—N1'—N2'−0.78 (9)
C5—C6—N1—N2178.69 (6)C5'—C6'—N1'—N2'177.97 (6)
O1—C2—N1—C6172.72 (7)O1'—C2'—N1'—C6'−176.24 (6)
C3—C2—N1—C6−8.16 (10)C3'—C2'—N1'—C6'3.79 (10)
O1—C2—N1—N2−5.41 (10)O1'—C2'—N1'—N2'0.63 (10)
C3—C2—N1—N2173.70 (6)C3'—C2'—N1'—N2'−179.34 (6)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N4i0.913 (13)2.541 (13)3.3713 (9)151.6 (11)
N2—H2B···N4ii0.916 (14)2.495 (14)3.2404 (10)138.7 (11)
N2—H2B···O1iii0.916 (14)2.381 (13)3.0650 (8)131.5 (11)
N5—H5A···N3′ii0.897 (14)2.525 (14)3.1431 (9)126.6 (11)
N5—H5B···O1′ii0.930 (14)1.986 (14)2.8853 (8)162.3 (12)
N2′—H2A′···O1′iv0.898 (13)2.186 (13)3.0608 (8)164.4 (11)
N2′—H2B′···N2iii0.902 (15)2.681 (14)3.1829 (8)116.1 (10)
N2′—H2B′···O10.902 (15)2.250 (15)3.1373 (9)167.5 (12)
N5′—H5A′···N3′i0.887 (15)2.102 (15)2.9314 (8)155.2 (13)
C9′—H9′···Cg20.952.933.7972 (5)153
  19 in total

1.  Crystal structure and Hirshfeld surface analysis of 1-(tert-butyl-amino)-3-mesitylpropan-2-ol hemi-hydrate.

Authors:  Ali N Khalilov; Victor N Khrustalev; Tatiana A Tereshina; Mehmet Akkurt; Rovnag M Rzayev; Anzurat A Akobirshoeva; İbrahim G Mamedov
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-04-28

2.  Ethyl 4-hydroxy-2,6-diphenyl-5-(phenylsulfanyl)pyridine-3-carboxylate and ethyl 2,6-bis(4-fluorophenyl)-4-hydroxy-5-(4-methylphenylsulfanyl)pyridine-3-carboxylate: supramolecular aggregation through C-H...O, C-H...F and C-H...pi interactions.

Authors:  J Suresh; R Suresh Kumar; S Perumal; A Mostad; S Natarajan
Journal:  Acta Crystallogr C       Date:  2007-01-31       Impact factor: 1.172

3.  Crystal Structure and Hirshfeld Surface Analysis of Acetoacetanilide Based Reaction Products.

Authors:  Farid N Naghiyev; Jonathan Cisterna; Ali N Khalilov; Abel M Maharramov; Rizvan K Askerov; Khammed A Asadov; Ibrahim G Mamedov; Khaver S Salmanli; Alejandro Cárdenas; Ivan Brito
Journal:  Molecules       Date:  2020-05-09       Impact factor: 4.411

Review 4.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

5.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

6.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

7.  Crystal structure and Hirshfeld surface analysis of 6-benzoyl-3,5-di-phenyl-cyclo-hex-2-en-1-one.

Authors:  Farid N Naghiyev; Mehmet Akkurt; Rizvan K Askerov; Ibrahim G Mamedov; Rovnag M Rzayev; Taras Chyrka; Abel M Maharramov
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2020-04-21

8.  Crystal structure and Hirshfeld surface analysis of 5-acetyl-2-amino-4-(4-bromo-phen-yl)-6-oxo-1-phenyl-1,4,5,6-tetra-hydro-pyridine-3-carbo-nitrile.

Authors:  Ibrahim G Mamedov; Victor N Khrustalev; Mehmet Akkurt; Anton P Novikov; Ayten R Asgarova; Khatira N Aliyeva; Anzurat A Akobirshoeva
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-02-03

9.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
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