| Literature DB >> 21581079 |
Kong Wai Tan, Chew Hee Ng, Mohd Jamil Maah, Seik Weng Ng.
Abstract
The approximately planar mol-ecule of the title compound, C(9)H(11)N(3)O(2)S, is linked to adjacent mol-ecules by O-H⋯S hydrogen bonds to form a zigzag chain. Adjacent chains are consolidated by N-H⋯O hydrogen bonds into a two-dimensional array. An intramolecular O-H⋯N link is also present.Entities:
Year: 2008 PMID: 21581079 PMCID: PMC2959547 DOI: 10.1107/S1600536808033308
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H11N3O2S | |
| Monoclinic, | Mo |
| Hall symbol: C -2yc | Cell parameters from 1090 reflections |
| θ = 2.4–24.9° | |
| µ = 0.31 mm−1 | |
| β = 106.695 (2)° | Prims, yellow |
| 0.09 × 0.06 × 0.03 mm | |
| Bruker SMART APEX diffractometer | 2128 independent reflections |
| Radiation source: fine-focus sealed tube | 1925 reflections with |
| graphite | |
| ω scans | θmax = 27.5°, θmin = 2.4° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | |
| 4390 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 2128 reflections | Δρmax = 0.31 e Å−3 |
| 153 parameters | Δρmin = −0.22 e Å−3 |
| 6 restraints | Absolute structure: Flack (1983), 814 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.00 (1) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| S1 | 0.50003 (5) | 0.63599 (16) | 0.50001 (6) | 0.01776 (19) | |
| O1 | 0.65168 (12) | −0.1181 (5) | 0.93136 (19) | 0.0174 (5) | |
| O2 | 0.84529 (13) | −0.8242 (5) | 1.05294 (19) | 0.0198 (5) | |
| N1 | 0.63927 (15) | 0.1424 (5) | 0.7309 (2) | 0.0144 (5) | |
| N2 | 0.60440 (15) | 0.2962 (6) | 0.6322 (2) | 0.0147 (5) | |
| N3 | 0.53164 (15) | 0.5567 (6) | 0.7241 (2) | 0.0166 (6) | |
| C1 | 0.73692 (17) | −0.2114 (7) | 0.8141 (2) | 0.0128 (6) | |
| C2 | 0.71210 (17) | −0.2660 (7) | 0.9113 (2) | 0.0122 (6) | |
| C3 | 0.74812 (18) | −0.4725 (7) | 0.9891 (3) | 0.0141 (6) | |
| H3 | 0.7300 | −0.5117 | 1.0530 | 0.017* | |
| C4 | 0.81112 (16) | −0.6232 (6) | 0.9739 (2) | 0.0142 (6) | |
| C5 | 0.83798 (18) | −0.5674 (7) | 0.8800 (3) | 0.0174 (7) | |
| H5 | 0.8815 | −0.6688 | 0.8704 | 0.021* | |
| C6 | 0.80096 (17) | −0.3645 (7) | 0.8017 (3) | 0.0159 (7) | |
| H6 | 0.8192 | −0.3274 | 0.7378 | 0.019* | |
| C7 | 0.69685 (17) | −0.0131 (7) | 0.7250 (2) | 0.0142 (6) | |
| H7 | 0.7142 | 0.0020 | 0.6590 | 0.017* | |
| C8 | 0.54711 (17) | 0.4887 (7) | 0.6279 (3) | 0.0149 (6) | |
| C9 | 0.47552 (19) | 0.7743 (8) | 0.7317 (3) | 0.0206 (7) | |
| H9A | 0.4879 | 0.8460 | 0.8099 | 0.031* | |
| H9B | 0.4234 | 0.6899 | 0.7100 | 0.031* | |
| H9C | 0.4773 | 0.9340 | 0.6804 | 0.031* | |
| H1O | 0.633 (3) | −0.017 (11) | 0.874 (3) | 0.08 (2)* | |
| H2O | 0.8796 (19) | −0.909 (8) | 1.032 (4) | 0.038 (13)* | |
| H2N | 0.6097 (19) | 0.218 (7) | 0.5703 (17) | 0.011 (8)* | |
| H3N | 0.5552 (19) | 0.476 (7) | 0.7898 (17) | 0.018 (9)* |
| S1 | 0.0196 (4) | 0.0180 (4) | 0.0138 (3) | 0.0027 (4) | 0.0018 (3) | 0.0021 (4) |
| O1 | 0.0193 (13) | 0.0174 (12) | 0.0159 (11) | 0.0038 (9) | 0.0059 (9) | 0.0029 (10) |
| O2 | 0.0216 (12) | 0.0196 (13) | 0.0171 (12) | 0.0069 (10) | 0.0037 (9) | 0.0040 (9) |
| N1 | 0.0159 (13) | 0.0126 (13) | 0.0125 (12) | −0.0018 (11) | 0.0008 (10) | 0.0013 (10) |
| N2 | 0.0176 (13) | 0.0163 (13) | 0.0097 (13) | 0.0024 (11) | 0.0030 (10) | −0.0001 (11) |
| N3 | 0.0195 (14) | 0.0144 (13) | 0.0152 (13) | 0.0023 (11) | 0.0037 (10) | 0.0014 (10) |
| C1 | 0.0153 (14) | 0.0135 (15) | 0.0103 (14) | −0.0029 (12) | 0.0048 (11) | −0.0005 (12) |
| C2 | 0.0105 (14) | 0.0147 (15) | 0.0129 (15) | −0.0017 (12) | 0.0056 (11) | −0.0034 (12) |
| C3 | 0.0162 (15) | 0.0159 (16) | 0.0120 (15) | −0.0032 (12) | 0.0069 (12) | −0.0012 (11) |
| C4 | 0.0148 (16) | 0.0139 (14) | 0.0113 (14) | −0.0007 (12) | −0.0006 (12) | 0.0000 (12) |
| C5 | 0.0155 (16) | 0.0163 (16) | 0.0180 (17) | 0.0012 (12) | 0.0010 (12) | −0.0031 (12) |
| C6 | 0.0121 (15) | 0.0214 (18) | 0.0134 (15) | −0.0031 (14) | 0.0023 (12) | −0.0033 (13) |
| C7 | 0.0157 (16) | 0.0164 (16) | 0.0117 (15) | −0.0035 (13) | 0.0058 (12) | −0.0016 (12) |
| C8 | 0.0154 (15) | 0.0127 (15) | 0.0175 (16) | −0.0031 (12) | 0.0064 (12) | 0.0002 (12) |
| C9 | 0.0169 (16) | 0.0266 (19) | 0.0201 (17) | 0.0003 (13) | 0.0079 (13) | −0.0038 (13) |
| S1—C8 | 1.699 (3) | C1—C2 | 1.413 (4) |
| O1—C2 | 1.367 (4) | C1—C7 | 1.454 (4) |
| O1—H1O | 0.838 (10) | C2—C3 | 1.378 (4) |
| O2—C4 | 1.360 (4) | C3—C4 | 1.391 (4) |
| O2—H2O | 0.836 (10) | C3—H3 | 0.9500 |
| N1—C7 | 1.283 (4) | C4—C5 | 1.397 (4) |
| N1—N2 | 1.392 (3) | C5—C6 | 1.374 (4) |
| N2—C8 | 1.354 (4) | C5—H5 | 0.9500 |
| N2—H2N | 0.871 (10) | C6—H6 | 0.9500 |
| N3—C8 | 1.328 (4) | C7—H7 | 0.9500 |
| N3—C9 | 1.451 (4) | C9—H9A | 0.9800 |
| N3—H3N | 0.880 (10) | C9—H9B | 0.9800 |
| C1—C6 | 1.400 (4) | C9—H9C | 0.9800 |
| C2—O1—H1O | 106 (4) | C3—C4—C5 | 120.5 (3) |
| C4—O2—H2O | 109 (3) | C6—C5—C4 | 119.5 (3) |
| C7—N1—N2 | 114.1 (3) | C6—C5—H5 | 120.3 |
| C8—N2—N1 | 121.4 (3) | C4—C5—H5 | 120.3 |
| C8—N2—H2N | 121 (2) | C5—C6—C1 | 121.4 (3) |
| N1—N2—H2N | 114 (2) | C5—C6—H6 | 119.3 |
| C8—N3—C9 | 123.4 (3) | C1—C6—H6 | 119.3 |
| C8—N3—H3N | 123 (3) | N1—C7—C1 | 123.2 (3) |
| C9—N3—H3N | 114 (3) | N1—C7—H7 | 118.4 |
| C6—C1—C2 | 118.1 (3) | C1—C7—H7 | 118.4 |
| C6—C1—C7 | 119.1 (3) | N3—C8—N2 | 118.3 (3) |
| C2—C1—C7 | 122.8 (3) | N3—C8—S1 | 123.4 (2) |
| O1—C2—C3 | 117.7 (3) | N2—C8—S1 | 118.3 (2) |
| O1—C2—C1 | 121.6 (3) | N3—C9—H9A | 109.5 |
| C3—C2—C1 | 120.8 (3) | N3—C9—H9B | 109.5 |
| C2—C3—C4 | 119.8 (3) | H9A—C9—H9B | 109.5 |
| C2—C3—H3 | 120.1 | N3—C9—H9C | 109.5 |
| C4—C3—H3 | 120.1 | H9A—C9—H9C | 109.5 |
| O2—C4—C3 | 117.9 (3) | H9B—C9—H9C | 109.5 |
| O2—C4—C5 | 121.6 (3) | ||
| C7—N1—N2—C8 | −174.4 (3) | C4—C5—C6—C1 | 0.2 (5) |
| C6—C1—C2—O1 | 177.7 (3) | C2—C1—C6—C5 | 1.4 (4) |
| C7—C1—C2—O1 | −4.9 (4) | C7—C1—C6—C5 | −176.0 (3) |
| C6—C1—C2—C3 | −2.5 (4) | N2—N1—C7—C1 | −174.0 (3) |
| C7—C1—C2—C3 | 174.8 (3) | C6—C1—C7—N1 | −177.7 (3) |
| O1—C2—C3—C4 | −178.3 (3) | C2—C1—C7—N1 | 5.0 (5) |
| C1—C2—C3—C4 | 1.9 (5) | C9—N3—C8—N2 | 175.6 (3) |
| C2—C3—C4—O2 | 179.7 (3) | C9—N3—C8—S1 | −3.1 (4) |
| C2—C3—C4—C5 | −0.2 (5) | N1—N2—C8—N3 | 8.8 (4) |
| O2—C4—C5—C6 | 179.3 (3) | N1—N2—C8—S1 | −172.5 (2) |
| C3—C4—C5—C6 | −0.9 (5) |
| H··· | ||||
| O1—H1O···N1 | 0.84 (1) | 1.93 (3) | 2.694 (3) | 151 (6) |
| O2—H2O···S1i | 0.84 (1) | 2.54 (1) | 3.365 (2) | 170 (4) |
| N2—H2N···O1ii | 0.87 (1) | 2.11 (1) | 2.950 (4) | 162 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1O⋯N1 | 0.84 (1) | 1.93 (3) | 2.694 (3) | 151 (6) |
| O2—H2O⋯S1i | 0.84 (1) | 2.54 (1) | 3.365 (2) | 170 (4) |
| N2—H2N⋯O1ii | 0.87 (1) | 2.11 (1) | 2.950 (4) | 162 (3) |
Symmetry codes: (i) ; (ii) .