Literature DB >> 21581079

2,4-Dihydroxy-benzaldehyde 4-methyl-thio-semicarbazone.

Kong Wai Tan, Chew Hee Ng, Mohd Jamil Maah, Seik Weng Ng.   

Abstract

The approximately planar mol-ecule of the title compound, C(9)H(11)N(3)O(2)S, is linked to adjacent mol-ecules by O-H⋯S hydrogen bonds to form a zigzag chain. Adjacent chains are consolidated by N-H⋯O hydrogen bonds into a two-dimensional array. An intramolecular O-H⋯N link is also present.

Entities:  

Year:  2008        PMID: 21581079      PMCID: PMC2959547          DOI: 10.1107/S1600536808033308

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of isomeric 2,5-dihydroxy­benzaldehyde 4-methyl­thio­semicarbazone, see: Tan et al. (2008 ▶).

Experimental

Crystal data

C9H11N3O2S M = 225.27 Monoclinic, a = 18.0046 (6) Å b = 4.6436 (1) Å c = 12.2842 (4) Å β = 106.695 (2)° V = 983.74 (5) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 100 (2) K 0.09 × 0.06 × 0.03 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.973, T max = 0.991 4390 measured reflections 2128 independent reflections 1925 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.109 S = 1.11 2128 reflections 153 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), with 814 Friedel pairs Flack parameter: 0.00 (1) Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808033308/tk2316sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808033308/tk2316Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N3O2SF(000) = 472
Mr = 225.27Dx = 1.521 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 1090 reflections
a = 18.0046 (6) Åθ = 2.4–24.9°
b = 4.6436 (1) ŵ = 0.31 mm1
c = 12.2842 (4) ÅT = 100 K
β = 106.695 (2)°Prims, yellow
V = 983.74 (5) Å30.09 × 0.06 × 0.03 mm
Z = 4
Bruker SMART APEX diffractometer2128 independent reflections
Radiation source: fine-focus sealed tube1925 reflections with I > 2σ(I)
graphiteRint = 0.034
ω scansθmax = 27.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −23→22
Tmin = 0.973, Tmax = 0.991k = −6→6
4390 measured reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0598P)2] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max = 0.001
2128 reflectionsΔρmax = 0.31 e Å3
153 parametersΔρmin = −0.22 e Å3
6 restraintsAbsolute structure: Flack (1983), 814 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.00 (1)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.50003 (5)0.63599 (16)0.50001 (6)0.01776 (19)
O10.65168 (12)−0.1181 (5)0.93136 (19)0.0174 (5)
O20.84529 (13)−0.8242 (5)1.05294 (19)0.0198 (5)
N10.63927 (15)0.1424 (5)0.7309 (2)0.0144 (5)
N20.60440 (15)0.2962 (6)0.6322 (2)0.0147 (5)
N30.53164 (15)0.5567 (6)0.7241 (2)0.0166 (6)
C10.73692 (17)−0.2114 (7)0.8141 (2)0.0128 (6)
C20.71210 (17)−0.2660 (7)0.9113 (2)0.0122 (6)
C30.74812 (18)−0.4725 (7)0.9891 (3)0.0141 (6)
H30.7300−0.51171.05300.017*
C40.81112 (16)−0.6232 (6)0.9739 (2)0.0142 (6)
C50.83798 (18)−0.5674 (7)0.8800 (3)0.0174 (7)
H50.8815−0.66880.87040.021*
C60.80096 (17)−0.3645 (7)0.8017 (3)0.0159 (7)
H60.8192−0.32740.73780.019*
C70.69685 (17)−0.0131 (7)0.7250 (2)0.0142 (6)
H70.71420.00200.65900.017*
C80.54711 (17)0.4887 (7)0.6279 (3)0.0149 (6)
C90.47552 (19)0.7743 (8)0.7317 (3)0.0206 (7)
H9A0.48790.84600.80990.031*
H9B0.42340.68990.71000.031*
H9C0.47730.93400.68040.031*
H1O0.633 (3)−0.017 (11)0.874 (3)0.08 (2)*
H2O0.8796 (19)−0.909 (8)1.032 (4)0.038 (13)*
H2N0.6097 (19)0.218 (7)0.5703 (17)0.011 (8)*
H3N0.5552 (19)0.476 (7)0.7898 (17)0.018 (9)*
U11U22U33U12U13U23
S10.0196 (4)0.0180 (4)0.0138 (3)0.0027 (4)0.0018 (3)0.0021 (4)
O10.0193 (13)0.0174 (12)0.0159 (11)0.0038 (9)0.0059 (9)0.0029 (10)
O20.0216 (12)0.0196 (13)0.0171 (12)0.0069 (10)0.0037 (9)0.0040 (9)
N10.0159 (13)0.0126 (13)0.0125 (12)−0.0018 (11)0.0008 (10)0.0013 (10)
N20.0176 (13)0.0163 (13)0.0097 (13)0.0024 (11)0.0030 (10)−0.0001 (11)
N30.0195 (14)0.0144 (13)0.0152 (13)0.0023 (11)0.0037 (10)0.0014 (10)
C10.0153 (14)0.0135 (15)0.0103 (14)−0.0029 (12)0.0048 (11)−0.0005 (12)
C20.0105 (14)0.0147 (15)0.0129 (15)−0.0017 (12)0.0056 (11)−0.0034 (12)
C30.0162 (15)0.0159 (16)0.0120 (15)−0.0032 (12)0.0069 (12)−0.0012 (11)
C40.0148 (16)0.0139 (14)0.0113 (14)−0.0007 (12)−0.0006 (12)0.0000 (12)
C50.0155 (16)0.0163 (16)0.0180 (17)0.0012 (12)0.0010 (12)−0.0031 (12)
C60.0121 (15)0.0214 (18)0.0134 (15)−0.0031 (14)0.0023 (12)−0.0033 (13)
C70.0157 (16)0.0164 (16)0.0117 (15)−0.0035 (13)0.0058 (12)−0.0016 (12)
C80.0154 (15)0.0127 (15)0.0175 (16)−0.0031 (12)0.0064 (12)0.0002 (12)
C90.0169 (16)0.0266 (19)0.0201 (17)0.0003 (13)0.0079 (13)−0.0038 (13)
S1—C81.699 (3)C1—C21.413 (4)
O1—C21.367 (4)C1—C71.454 (4)
O1—H1O0.838 (10)C2—C31.378 (4)
O2—C41.360 (4)C3—C41.391 (4)
O2—H2O0.836 (10)C3—H30.9500
N1—C71.283 (4)C4—C51.397 (4)
N1—N21.392 (3)C5—C61.374 (4)
N2—C81.354 (4)C5—H50.9500
N2—H2N0.871 (10)C6—H60.9500
N3—C81.328 (4)C7—H70.9500
N3—C91.451 (4)C9—H9A0.9800
N3—H3N0.880 (10)C9—H9B0.9800
C1—C61.400 (4)C9—H9C0.9800
C2—O1—H1O106 (4)C3—C4—C5120.5 (3)
C4—O2—H2O109 (3)C6—C5—C4119.5 (3)
C7—N1—N2114.1 (3)C6—C5—H5120.3
C8—N2—N1121.4 (3)C4—C5—H5120.3
C8—N2—H2N121 (2)C5—C6—C1121.4 (3)
N1—N2—H2N114 (2)C5—C6—H6119.3
C8—N3—C9123.4 (3)C1—C6—H6119.3
C8—N3—H3N123 (3)N1—C7—C1123.2 (3)
C9—N3—H3N114 (3)N1—C7—H7118.4
C6—C1—C2118.1 (3)C1—C7—H7118.4
C6—C1—C7119.1 (3)N3—C8—N2118.3 (3)
C2—C1—C7122.8 (3)N3—C8—S1123.4 (2)
O1—C2—C3117.7 (3)N2—C8—S1118.3 (2)
O1—C2—C1121.6 (3)N3—C9—H9A109.5
C3—C2—C1120.8 (3)N3—C9—H9B109.5
C2—C3—C4119.8 (3)H9A—C9—H9B109.5
C2—C3—H3120.1N3—C9—H9C109.5
C4—C3—H3120.1H9A—C9—H9C109.5
O2—C4—C3117.9 (3)H9B—C9—H9C109.5
O2—C4—C5121.6 (3)
C7—N1—N2—C8−174.4 (3)C4—C5—C6—C10.2 (5)
C6—C1—C2—O1177.7 (3)C2—C1—C6—C51.4 (4)
C7—C1—C2—O1−4.9 (4)C7—C1—C6—C5−176.0 (3)
C6—C1—C2—C3−2.5 (4)N2—N1—C7—C1−174.0 (3)
C7—C1—C2—C3174.8 (3)C6—C1—C7—N1−177.7 (3)
O1—C2—C3—C4−178.3 (3)C2—C1—C7—N15.0 (5)
C1—C2—C3—C41.9 (5)C9—N3—C8—N2175.6 (3)
C2—C3—C4—O2179.7 (3)C9—N3—C8—S1−3.1 (4)
C2—C3—C4—C5−0.2 (5)N1—N2—C8—N38.8 (4)
O2—C4—C5—C6179.3 (3)N1—N2—C8—S1−172.5 (2)
C3—C4—C5—C6−0.9 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1O···N10.84 (1)1.93 (3)2.694 (3)151 (6)
O2—H2O···S1i0.84 (1)2.54 (1)3.365 (2)170 (4)
N2—H2N···O1ii0.87 (1)2.11 (1)2.950 (4)162 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯N10.84 (1)1.93 (3)2.694 (3)151 (6)
O2—H2O⋯S1i0.84 (1)2.54 (1)3.365 (2)170 (4)
N2—H2N⋯O1ii0.87 (1)2.11 (1)2.950 (4)162 (3)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,5-Dihydroxy-benzaldehyde 4-methyl-thio-semicarbazone.

Authors:  Kong Wai Tan; Chew Hee Ng; Mohd Jamil Maah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-28
  2 in total
  1 in total

1.  Crystal structure of a new monoclinic polymorph of 2,4-di-hydroxy-benzaldehyde 4-methyl-thio-semi-carbazone.

Authors:  M A Salam; Mouayed A Hussein; Edward R T Tiekink
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-01
  1 in total

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