Literature DB >> 21202955

2-(1H-Imidazo[4,5-f][1,10]phenanthrolin-2-yl)phenol monohydrate.

Wen-Zhi Zhang1, Li Li, Ying-Hui Xiao.   

Abstract

The asymmetric unit of the title compound, C(19)H(12)N(4)O·H(2)O, contains one organic molecule and one solvent water mol-ecule, which are connected by N-H⋯O and O-H⋯N hydrogen bonds. In addition, there is one intra-molecular O-H⋯N hydrogen bond. The organic mol-ecule is essentially planar (r.m.s. deviation for all non-H atoms = 0.028 Å).

Entities:  

Year:  2008        PMID: 21202955      PMCID: PMC2961708          DOI: 10.1107/S1600536808018527

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Yin (2008 ▶). For a related structure, see: Sun et al. (2007 ▶).

Experimental

Crystal data

C19H12N4H2O M = 330.34 Monoclinic, a = 4.5272 (9) Å b = 19.822 (4) Å c = 16.956 (3) Å β = 94.15 (3)° V = 1517.6 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 (2) K 0.21 × 0.17 × 0.15 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.975, T max = 0.989 14107 measured reflections 3351 independent reflections 1342 reflections with I > 2σ(I) R int = 0.177

Refinement

R[F 2 > 2σ(F 2)] = 0.094 wR(F 2) = 0.205 S = 1.02 3351 reflections 232 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.21 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: PROCESS-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808018527/bt2727sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808018527/bt2727Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H12N4O·H2OF000 = 688
Mr = 330.34Dx = 1.446 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6908 reflections
a = 4.5272 (9) Åθ = 3.0–27.5º
b = 19.822 (4) ŵ = 0.10 mm1
c = 16.956 (3) ÅT = 293 (2) K
β = 94.15 (3)ºBlock, pale yellow
V = 1517.6 (5) Å30.21 × 0.17 × 0.15 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer3351 independent reflections
Radiation source: rotating anode1342 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.177
Detector resolution: 10.0 pixels mm-1θmax = 27.5º
T = 293(2) Kθmin = 3.2º
ω scansh = −5→5
Absorption correction: multi-scan(ABSCOR; Higashi, 1995)k = −25→25
Tmin = 0.975, Tmax = 0.989l = −21→21
14107 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.094H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.205  w = 1/[σ2(Fo2) + (0.0767P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.006
3351 reflectionsΔρmax = 0.20 e Å3
232 parametersΔρmin = −0.21 e Å3
3 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8402 (11)0.1329 (2)1.0945 (2)0.0583 (13)
H10.95020.13131.14290.070*
C20.6283 (11)0.0844 (3)1.0794 (2)0.0632 (14)
H20.59330.05191.11720.076*
C30.4704 (10)0.0846 (2)1.0080 (2)0.0568 (12)
H30.32340.05260.99640.068*
C40.5324 (9)0.1337 (2)0.9525 (2)0.0454 (11)
C50.7451 (9)0.1833 (2)0.9742 (2)0.0436 (10)
C60.8102 (9)0.2370 (2)0.9201 (2)0.0434 (10)
C71.0598 (11)0.3337 (2)0.8980 (3)0.0622 (13)
H71.19260.36690.91630.075*
C80.6649 (9)0.2387 (2)0.8427 (2)0.0414 (10)
C90.3919 (9)0.1377 (2)0.8750 (2)0.0419 (10)
C100.4603 (9)0.1867 (2)0.8232 (2)0.0413 (10)
C110.1276 (9)0.1180 (2)0.7673 (2)0.0421 (10)
C12−0.0845 (9)0.0871 (2)0.7108 (2)0.0467 (11)
C13−0.2259 (10)0.0279 (2)0.7296 (3)0.0544 (12)
C14−0.4299 (11)−0.0019 (3)0.6760 (3)0.0685 (14)
H14−0.5268−0.04110.68950.082*
C15−0.4894 (11)0.0265 (3)0.6030 (3)0.0740 (16)
H15−0.62680.00620.56710.089*
C16−0.1476 (10)0.1140 (2)0.6352 (2)0.0610 (13)
H16−0.05060.15290.62050.073*
C17−0.3502 (11)0.0840 (3)0.5825 (3)0.0717 (15)
H17−0.39240.10280.53270.086*
C180.9353 (10)0.3391 (2)0.8210 (2)0.0587 (13)
H180.98710.37450.78870.070*
C190.7362 (10)0.2917 (2)0.7935 (2)0.0486 (11)
H190.64850.29460.74230.058*
O1−0.1730 (7)−0.00281 (16)0.80052 (18)0.0763 (11)
H1A−0.04990.01890.82780.114*
N11.0015 (8)0.28440 (19)0.94675 (19)0.0546 (10)
N20.9002 (8)0.18203 (19)1.04526 (18)0.0504 (10)
N30.1823 (7)0.09440 (17)0.84045 (18)0.0449 (9)
N40.2873 (7)0.17430 (17)0.75510 (17)0.0458 (9)
H40.28140.19790.71250.055*
O1W0.3484 (8)0.24505 (18)0.61814 (17)0.0688 (10)
HW120.195 (7)0.257 (2)0.588 (2)0.083*
HW110.444 (9)0.219 (2)0.590 (2)0.083*
U11U22U33U12U13U23
C10.074 (4)0.061 (3)0.039 (2)0.011 (3)−0.006 (2)0.001 (2)
C20.075 (4)0.071 (4)0.044 (3)0.008 (3)0.004 (2)0.013 (2)
C30.064 (3)0.055 (3)0.052 (3)0.001 (3)0.007 (2)0.008 (2)
C40.049 (3)0.048 (3)0.039 (2)0.007 (2)0.0045 (19)0.002 (2)
C50.046 (3)0.044 (3)0.041 (2)0.008 (2)−0.0006 (19)−0.003 (2)
C60.045 (3)0.039 (3)0.046 (2)0.005 (2)0.002 (2)−0.005 (2)
C70.069 (4)0.053 (3)0.063 (3)−0.012 (3)−0.009 (2)−0.009 (3)
C80.043 (3)0.040 (3)0.041 (2)0.007 (2)0.0010 (19)0.0004 (19)
C90.040 (3)0.039 (3)0.047 (2)0.001 (2)0.0010 (19)0.000 (2)
C100.039 (3)0.042 (3)0.041 (2)0.004 (2)−0.0061 (19)−0.001 (2)
C110.043 (3)0.035 (2)0.047 (2)0.009 (2)0.0010 (19)−0.003 (2)
C120.044 (3)0.042 (3)0.053 (3)0.004 (2)−0.004 (2)−0.002 (2)
C130.055 (3)0.046 (3)0.062 (3)0.006 (2)0.002 (2)−0.006 (2)
C140.060 (4)0.056 (3)0.088 (4)−0.010 (3)0.001 (3)−0.022 (3)
C150.066 (4)0.078 (4)0.075 (4)−0.003 (3)−0.016 (3)−0.022 (3)
C160.058 (3)0.057 (3)0.066 (3)−0.001 (3)−0.009 (2)−0.003 (3)
C170.072 (4)0.071 (4)0.069 (3)−0.001 (3)−0.019 (3)−0.007 (3)
C180.069 (4)0.049 (3)0.057 (3)−0.007 (2)0.001 (2)0.004 (2)
C190.054 (3)0.046 (3)0.046 (2)0.001 (2)0.000 (2)0.002 (2)
O10.077 (2)0.066 (2)0.083 (2)−0.0178 (19)−0.0115 (18)0.0141 (19)
N10.063 (3)0.047 (2)0.053 (2)−0.011 (2)−0.0019 (18)−0.0013 (19)
N20.059 (2)0.052 (2)0.0394 (19)0.0082 (19)0.0000 (17)0.0002 (18)
N30.043 (2)0.046 (2)0.0449 (19)0.0014 (18)0.0012 (16)0.0004 (17)
N40.046 (2)0.044 (2)0.0463 (19)0.0008 (18)−0.0033 (16)0.0060 (17)
O1W0.077 (3)0.071 (3)0.0559 (19)0.000 (2)−0.0092 (16)0.0158 (17)
C1—N21.323 (5)C11—N31.332 (5)
C1—C21.370 (6)C11—N41.353 (5)
C1—H10.9300C11—C121.443 (5)
C2—C31.360 (5)C12—C131.384 (6)
C2—H20.9300C12—C161.400 (5)
C3—C41.397 (5)C13—O11.353 (5)
C3—H30.9300C13—C141.380 (6)
C4—C51.407 (6)C14—C151.368 (6)
C4—C91.420 (5)C14—H140.9300
C5—N21.351 (4)C15—C171.360 (7)
C5—C61.449 (5)C15—H150.9300
C6—N11.334 (5)C16—C171.370 (6)
C6—C81.424 (5)C16—H160.9300
C7—N11.318 (5)C17—H170.9300
C7—C181.389 (5)C18—C191.361 (6)
C7—H70.9300C18—H180.9300
C8—C191.393 (5)C19—H190.9300
C8—C101.410 (5)O1—H1A0.8200
C9—C101.360 (5)N4—H40.8600
C9—N31.378 (5)O1W—HW120.863 (18)
C10—N41.370 (4)O1W—HW110.841 (18)
N2—C1—C2124.9 (4)C13—C12—C16117.8 (4)
N2—C1—H1117.5C13—C12—C11120.3 (4)
C2—C1—H1117.5C16—C12—C11121.8 (4)
C3—C2—C1118.7 (4)O1—C13—C14117.4 (4)
C3—C2—H2120.7O1—C13—C12122.0 (4)
C1—C2—H2120.7C14—C13—C12120.6 (4)
C2—C3—C4118.9 (4)C15—C14—C13119.9 (5)
C2—C3—H3120.5C15—C14—H14120.1
C4—C3—H3120.5C13—C14—H14120.1
C3—C4—C5118.6 (4)C17—C15—C14120.8 (5)
C3—C4—C9124.4 (4)C17—C15—H15119.6
C5—C4—C9117.1 (4)C14—C15—H15119.6
N2—C5—C4121.4 (4)C17—C16—C12121.0 (5)
N2—C5—C6117.6 (4)C17—C16—H16119.5
C4—C5—C6121.0 (3)C12—C16—H16119.5
N1—C6—C8122.8 (4)C15—C17—C16119.8 (5)
N1—C6—C5117.3 (3)C15—C17—H17120.1
C8—C6—C5119.9 (4)C16—C17—H17120.1
N1—C7—C18124.1 (4)C19—C18—C7118.8 (4)
N1—C7—H7117.9C19—C18—H18120.6
C18—C7—H7117.9C7—C18—H18120.6
C19—C8—C10126.0 (3)C18—C19—C8119.5 (4)
C19—C8—C6117.2 (4)C18—C19—H19120.3
C10—C8—C6116.8 (4)C8—C19—H19120.3
C10—C9—N3110.6 (3)C13—O1—H1A109.5
C10—C9—C4122.0 (4)C7—N1—C6117.6 (4)
N3—C9—C4127.4 (4)C1—N2—C5117.4 (4)
C9—C10—N4105.8 (3)C11—N3—C9104.6 (3)
C9—C10—C8123.2 (3)C11—N4—C10107.3 (3)
N4—C10—C8130.9 (4)C11—N4—H4126.3
N3—C11—N4111.5 (3)C10—N4—H4126.3
N3—C11—C12122.5 (4)HW12—O1W—HW11105 (3)
N4—C11—C12125.9 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N30.821.832.569 (5)149
N4—H4···O1W0.861.902.744 (4)169
O1W—HW12···N2i0.863 (18)1.91 (2)2.715 (5)155 (4)
O1W—HW12···N1i0.863 (18)2.62 (4)3.255 (5)131 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N30.821.832.569 (5)149
N4—H4⋯O1W0.861.902.744 (4)169
O1W—HW12⋯N2i0.863 (18)1.91 (2)2.715 (5)155 (4)
O1W—HW12⋯N1i0.863 (18)2.62 (4)3.255 (5)131 (3)

Symmetry code: (i) .

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