| Literature DB >> 21580157 |
Abstract
In the title compound, C(20)H(11)N(5)·CH(3)OH, the benzene ring is twisted by a small dihedral angle of 1.89 (11)° with respect to the imidazo[4,5-f][1,10]phenanthroline ring system. N-H⋯O and O-H⋯N hydrogen bonding is present in the crystal structure.Entities:
Year: 2009 PMID: 21580157 PMCID: PMC2980254 DOI: 10.1107/S1600536809051472
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H11N5·CH4O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 2018 reflections |
| θ = 3.0–26.0° | |
| µ = 0.09 mm−1 | |
| β = 99.956 (19)° | Block, colorless |
| 0.30 × 0.28 × 0.26 mm | |
| Rigaku, SCXmini diffractometer | 2018 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 26.0°, θmin = 3.0° |
| Detector resolution: 13.6612 pixels mm-1 | |
| ω scan | |
| 15971 measured reflections | |
| 3432 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3432 reflections | (Δ/σ)max < 0.001 |
| 245 parameters | Δρmax = 0.18 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.6541 (5) | −0.05805 (18) | 0.7761 (3) | 0.0518 (8) | |
| C2 | 0.6702 (4) | −0.07430 (16) | 0.6737 (2) | 0.0430 (7) | |
| C3 | 0.6441 (4) | −0.14493 (17) | 0.6377 (3) | 0.0510 (8) | |
| H3A | 0.6173 | −0.1822 | 0.6795 | 0.061* | |
| C4 | 0.6581 (5) | −0.15944 (17) | 0.5396 (3) | 0.0538 (9) | |
| H4A | 0.6398 | −0.2066 | 0.5152 | 0.065* | |
| C5 | 0.6993 (4) | −0.10430 (17) | 0.4769 (2) | 0.0501 (8) | |
| H5A | 0.7079 | −0.1149 | 0.4107 | 0.060* | |
| C6 | 0.7281 (4) | −0.03325 (15) | 0.5117 (2) | 0.0386 (7) | |
| C7 | 0.7123 (4) | −0.01864 (16) | 0.6113 (2) | 0.0407 (7) | |
| H7A | 0.7300 | 0.0285 | 0.6360 | 0.049* | |
| C8 | 0.7695 (4) | 0.02402 (15) | 0.4435 (2) | 0.0391 (7) | |
| C9 | 0.8262 (4) | 0.08115 (15) | 0.3144 (2) | 0.0388 (7) | |
| C10 | 0.8600 (4) | 0.10077 (16) | 0.2162 (2) | 0.0391 (7) | |
| C11 | 0.8394 (4) | 0.05275 (17) | 0.1346 (2) | 0.0490 (8) | |
| H11A | 0.7998 | 0.0051 | 0.1413 | 0.059* | |
| C12 | 0.8787 (5) | 0.07721 (19) | 0.0448 (2) | 0.0567 (9) | |
| H12A | 0.8629 | 0.0470 | −0.0110 | 0.068* | |
| C13 | 0.9430 (5) | 0.14836 (19) | 0.0393 (2) | 0.0596 (10) | |
| H13A | 0.9758 | 0.1633 | −0.0210 | 0.072* | |
| C14 | 0.9157 (4) | 0.17313 (16) | 0.2013 (2) | 0.0411 (7) | |
| C15 | 0.9232 (4) | 0.22708 (16) | 0.2820 (2) | 0.0407 (7) | |
| C16 | 0.9749 (5) | 0.34573 (18) | 0.3349 (3) | 0.0622 (10) | |
| H16A | 1.0103 | 0.3930 | 0.3221 | 0.075* | |
| C17 | 0.9213 (5) | 0.33164 (18) | 0.4271 (2) | 0.0592 (9) | |
| H17A | 0.9197 | 0.3687 | 0.4737 | 0.071* | |
| C18 | 0.8714 (5) | 0.26248 (17) | 0.4477 (2) | 0.0511 (8) | |
| H18A | 0.8365 | 0.2515 | 0.5090 | 0.061* | |
| C19 | 0.8732 (4) | 0.20771 (15) | 0.3752 (2) | 0.0388 (7) | |
| C20 | 0.8320 (4) | 0.13278 (15) | 0.3885 (2) | 0.0371 (7) | |
| C21 | 0.9291 (6) | 0.1623 (3) | 0.7300 (3) | 0.1045 (16) | |
| H21A | 0.9003 | 0.1877 | 0.7875 | 0.157* | |
| H21B | 1.0353 | 0.1853 | 0.7075 | 0.157* | |
| H21C | 0.9610 | 0.1127 | 0.7478 | 0.157* | |
| N1 | 0.6392 (5) | −0.04524 (19) | 0.8570 (2) | 0.0749 (9) | |
| N2 | 0.7870 (3) | 0.01301 (12) | 0.34899 (16) | 0.0406 (6) | |
| N3 | 0.7950 (3) | 0.09555 (12) | 0.47126 (17) | 0.0390 (6) | |
| H3B | 0.7891 | 0.1137 | 0.5291 | 0.047* | |
| N4 | 0.9610 (4) | 0.19635 (14) | 0.11301 (19) | 0.0550 (7) | |
| N5 | 0.9787 (4) | 0.29620 (13) | 0.26399 (19) | 0.0513 (7) | |
| O1 | 0.7700 (4) | 0.16399 (13) | 0.65327 (16) | 0.0640 (7) | |
| H1E | 0.6578 | 0.1781 | 0.6823 | 0.14 (2)* |
| C1 | 0.050 (2) | 0.061 (2) | 0.044 (2) | −0.0024 (16) | 0.0072 (16) | 0.0113 (16) |
| C2 | 0.0349 (16) | 0.050 (2) | 0.0432 (18) | 0.0017 (13) | 0.0034 (14) | 0.0069 (14) |
| C3 | 0.051 (2) | 0.0400 (19) | 0.063 (2) | −0.0021 (14) | 0.0118 (17) | 0.0147 (16) |
| C4 | 0.055 (2) | 0.0383 (19) | 0.070 (2) | −0.0027 (14) | 0.0155 (18) | −0.0017 (17) |
| C5 | 0.0488 (19) | 0.050 (2) | 0.052 (2) | −0.0018 (15) | 0.0117 (16) | −0.0018 (16) |
| C6 | 0.0300 (16) | 0.0410 (17) | 0.0446 (17) | 0.0024 (12) | 0.0063 (13) | 0.0044 (13) |
| C7 | 0.0409 (17) | 0.0381 (17) | 0.0426 (18) | −0.0026 (13) | 0.0060 (14) | 0.0031 (13) |
| C8 | 0.0345 (16) | 0.0416 (17) | 0.0414 (17) | 0.0021 (12) | 0.0074 (13) | 0.0001 (13) |
| C9 | 0.0359 (16) | 0.0419 (18) | 0.0382 (16) | −0.0003 (12) | 0.0051 (13) | 0.0016 (13) |
| C10 | 0.0351 (16) | 0.0460 (18) | 0.0361 (16) | 0.0024 (13) | 0.0062 (13) | −0.0013 (13) |
| C11 | 0.053 (2) | 0.0483 (19) | 0.0457 (19) | 0.0018 (15) | 0.0095 (16) | −0.0034 (15) |
| C12 | 0.070 (2) | 0.062 (2) | 0.0386 (19) | 0.0111 (17) | 0.0105 (17) | −0.0064 (16) |
| C13 | 0.078 (3) | 0.066 (2) | 0.0375 (19) | 0.0088 (19) | 0.0183 (17) | 0.0087 (17) |
| C14 | 0.0407 (17) | 0.0470 (19) | 0.0357 (16) | 0.0054 (13) | 0.0071 (13) | 0.0038 (13) |
| C15 | 0.0378 (17) | 0.0422 (18) | 0.0422 (17) | 0.0020 (13) | 0.0077 (14) | 0.0027 (13) |
| C16 | 0.087 (3) | 0.0392 (19) | 0.063 (2) | −0.0115 (17) | 0.021 (2) | −0.0003 (17) |
| C17 | 0.079 (3) | 0.049 (2) | 0.052 (2) | −0.0060 (17) | 0.0183 (18) | −0.0075 (16) |
| C18 | 0.064 (2) | 0.049 (2) | 0.0429 (18) | −0.0016 (16) | 0.0161 (16) | −0.0037 (15) |
| C19 | 0.0389 (17) | 0.0409 (18) | 0.0377 (16) | 0.0005 (12) | 0.0099 (13) | −0.0005 (13) |
| C20 | 0.0347 (16) | 0.0436 (18) | 0.0345 (16) | 0.0030 (12) | 0.0103 (13) | 0.0041 (13) |
| C21 | 0.082 (3) | 0.134 (4) | 0.092 (3) | 0.011 (3) | −0.002 (3) | −0.042 (3) |
| N1 | 0.071 (2) | 0.100 (3) | 0.053 (2) | −0.0063 (18) | 0.0090 (17) | 0.0078 (18) |
| N2 | 0.0423 (15) | 0.0424 (15) | 0.0386 (14) | −0.0004 (11) | 0.0114 (11) | 0.0001 (11) |
| N3 | 0.0434 (14) | 0.0430 (15) | 0.0322 (13) | 0.0006 (11) | 0.0110 (11) | −0.0003 (11) |
| N4 | 0.073 (2) | 0.0573 (18) | 0.0366 (15) | 0.0024 (14) | 0.0161 (14) | 0.0035 (13) |
| N5 | 0.0651 (18) | 0.0425 (16) | 0.0489 (16) | −0.0064 (13) | 0.0171 (13) | −0.0016 (12) |
| O1 | 0.0695 (17) | 0.0778 (17) | 0.0474 (14) | 0.0083 (13) | 0.0177 (13) | −0.0119 (12) |
| C1—N1 | 1.145 (4) | C12—H12A | 0.9300 |
| C1—C2 | 1.444 (4) | C13—N4 | 1.323 (4) |
| C2—C3 | 1.388 (4) | C13—H13A | 0.9300 |
| C2—C7 | 1.393 (4) | C14—N4 | 1.361 (4) |
| C3—C4 | 1.376 (4) | C14—C15 | 1.471 (4) |
| C3—H3A | 0.9300 | C15—N5 | 1.365 (4) |
| C4—C5 | 1.387 (4) | C15—C19 | 1.416 (4) |
| C4—H4A | 0.9300 | C16—N5 | 1.328 (4) |
| C5—C6 | 1.392 (4) | C16—C17 | 1.393 (4) |
| C5—H5A | 0.9300 | C16—H16A | 0.9300 |
| C6—C7 | 1.400 (4) | C17—C18 | 1.362 (4) |
| C6—C8 | 1.465 (4) | C17—H17A | 0.9300 |
| C7—H7A | 0.9300 | C18—C19 | 1.409 (4) |
| C8—N2 | 1.324 (3) | C18—H18A | 0.9300 |
| C8—N3 | 1.371 (3) | C19—C20 | 1.426 (4) |
| C9—C20 | 1.378 (4) | C20—N3 | 1.377 (3) |
| C9—N2 | 1.383 (3) | C21—O1 | 1.400 (4) |
| C9—C10 | 1.439 (4) | C21—H21A | 0.9600 |
| C10—C11 | 1.403 (4) | C21—H21B | 0.9600 |
| C10—C14 | 1.412 (4) | C21—H21C | 0.9600 |
| C11—C12 | 1.371 (4) | N3—H3B | 0.8600 |
| C11—H11A | 0.9300 | O1—H1E | 0.9842 |
| C12—C13 | 1.392 (5) | ||
| N1—C1—C2 | 179.2 (4) | C12—C13—H13A | 117.4 |
| C3—C2—C7 | 120.2 (3) | N4—C14—C10 | 122.4 (3) |
| C3—C2—C1 | 120.2 (3) | N4—C14—C15 | 117.3 (3) |
| C7—C2—C1 | 119.5 (3) | C10—C14—C15 | 120.3 (3) |
| C4—C3—C2 | 119.6 (3) | N5—C15—C19 | 121.3 (3) |
| C4—C3—H3A | 120.2 | N5—C15—C14 | 118.0 (3) |
| C2—C3—H3A | 120.2 | C19—C15—C14 | 120.8 (3) |
| C3—C4—C5 | 120.6 (3) | N5—C16—C17 | 124.4 (3) |
| C3—C4—H4A | 119.7 | N5—C16—H16A | 117.8 |
| C5—C4—H4A | 119.7 | C17—C16—H16A | 117.8 |
| C4—C5—C6 | 120.8 (3) | C18—C17—C16 | 118.6 (3) |
| C4—C5—H5A | 119.6 | C18—C17—H17A | 120.7 |
| C6—C5—H5A | 119.6 | C16—C17—H17A | 120.7 |
| C5—C6—C7 | 118.4 (3) | C17—C18—C19 | 119.3 (3) |
| C5—C6—C8 | 119.6 (3) | C17—C18—H18A | 120.3 |
| C7—C6—C8 | 122.0 (3) | C19—C18—H18A | 120.3 |
| C2—C7—C6 | 120.4 (3) | C18—C19—C15 | 118.5 (3) |
| C2—C7—H7A | 119.8 | C18—C19—C20 | 125.1 (3) |
| C6—C7—H7A | 119.8 | C15—C19—C20 | 116.4 (3) |
| N2—C8—N3 | 112.4 (2) | N3—C20—C9 | 105.4 (2) |
| N2—C8—C6 | 124.3 (3) | N3—C20—C19 | 131.0 (3) |
| N3—C8—C6 | 123.2 (3) | C9—C20—C19 | 123.6 (3) |
| C20—C9—N2 | 111.0 (3) | O1—C21—H21A | 109.5 |
| C20—C9—C10 | 120.9 (3) | O1—C21—H21B | 109.5 |
| N2—C9—C10 | 128.1 (3) | H21A—C21—H21B | 109.5 |
| C11—C10—C14 | 118.3 (3) | O1—C21—H21C | 109.5 |
| C11—C10—C9 | 124.1 (3) | H21A—C21—H21C | 109.5 |
| C14—C10—C9 | 117.6 (3) | H21B—C21—H21C | 109.5 |
| C12—C11—C10 | 119.0 (3) | C8—N2—C9 | 104.4 (2) |
| C12—C11—H11A | 120.5 | C8—N3—C20 | 106.8 (2) |
| C10—C11—H11A | 120.5 | C8—N3—H3B | 126.6 |
| C11—C12—C13 | 118.4 (3) | C20—N3—H3B | 126.6 |
| C11—C12—H12A | 120.8 | C13—N4—C14 | 116.7 (3) |
| C13—C12—H12A | 120.8 | C16—N5—C15 | 117.8 (3) |
| N4—C13—C12 | 125.2 (3) | C21—O1—H1E | 108.4 |
| N4—C13—H13A | 117.4 |
| H··· | ||||
| N3—H3B···O1 | 0.86 | 1.95 | 2.803 (3) | 174 |
| O1—H1E···N5i | 0.98 | 1.89 | 2.857 (3) | 168 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.86 | 1.95 | 2.803 (3) | 174 |
| O1—H1 | 0.98 | 1.89 | 2.857 (3) | 168 |
Symmetry code: (i) .