Literature DB >> 21580157

3-(1H-Imidazo[4,5-f][1,10]phenanthrolin-2-yl)benzonitrile methanol solvate.

Wen-Lan Wang1.   

Abstract

In the title compound, C(20)H(11)N(5)·CH(3)OH, the benzene ring is twisted by a small dihedral angle of 1.89 (11)° with respect to the imidazo[4,5-f][1,10]phenanthroline ring system. N-H⋯O and O-H⋯N hydrogen bonding is present in the crystal structure.

Entities:  

Year:  2009        PMID: 21580157      PMCID: PMC2980254          DOI: 10.1107/S1600536809051472

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Sun et al. (2007 ▶); Yin (2008 ▶); Zhang et al. (2008 ▶).

Experimental

Crystal data

C20H11N5·CH4O M = 353.38 Monoclinic, a = 7.115 (1) Å b = 18.385 (2) Å c = 13.5576 (12) Å β = 99.956 (19)° V = 1746.7 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.28 × 0.26 mm

Data collection

Rigaku, SCXmini diffractometer 15971 measured reflections 3432 independent reflections 2018 reflections with I > 2σ(I) R int = 0.099

Refinement

R[F 2 > 2σ(F 2)] = 0.072 wR(F 2) = 0.179 S = 1.04 3432 reflections 245 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809051472/xu2700sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809051472/xu2700Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H11N5·CH4OF(000) = 736
Mr = 353.38Dx = 1.344 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2018 reflections
a = 7.115 (1) Åθ = 3.0–26.0°
b = 18.385 (2) ŵ = 0.09 mm1
c = 13.5576 (12) ÅT = 293 K
β = 99.956 (19)°Block, colorless
V = 1746.7 (4) Å30.30 × 0.28 × 0.26 mm
Z = 4
Rigaku, SCXmini diffractometer2018 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.099
graphiteθmax = 26.0°, θmin = 3.0°
Detector resolution: 13.6612 pixels mm-1h = −8→8
ω scank = −22→22
15971 measured reflectionsl = −16→16
3432 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.072Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.179H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0784P)2 + 0.0647P] where P = (Fo2 + 2Fc2)/3
3432 reflections(Δ/σ)max < 0.001
245 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6541 (5)−0.05805 (18)0.7761 (3)0.0518 (8)
C20.6702 (4)−0.07430 (16)0.6737 (2)0.0430 (7)
C30.6441 (4)−0.14493 (17)0.6377 (3)0.0510 (8)
H3A0.6173−0.18220.67950.061*
C40.6581 (5)−0.15944 (17)0.5396 (3)0.0538 (9)
H4A0.6398−0.20660.51520.065*
C50.6993 (4)−0.10430 (17)0.4769 (2)0.0501 (8)
H5A0.7079−0.11490.41070.060*
C60.7281 (4)−0.03325 (15)0.5117 (2)0.0386 (7)
C70.7123 (4)−0.01864 (16)0.6113 (2)0.0407 (7)
H7A0.73000.02850.63600.049*
C80.7695 (4)0.02402 (15)0.4435 (2)0.0391 (7)
C90.8262 (4)0.08115 (15)0.3144 (2)0.0388 (7)
C100.8600 (4)0.10077 (16)0.2162 (2)0.0391 (7)
C110.8394 (4)0.05275 (17)0.1346 (2)0.0490 (8)
H11A0.79980.00510.14130.059*
C120.8787 (5)0.07721 (19)0.0448 (2)0.0567 (9)
H12A0.86290.0470−0.01100.068*
C130.9430 (5)0.14836 (19)0.0393 (2)0.0596 (10)
H13A0.97580.1633−0.02100.072*
C140.9157 (4)0.17313 (16)0.2013 (2)0.0411 (7)
C150.9232 (4)0.22708 (16)0.2820 (2)0.0407 (7)
C160.9749 (5)0.34573 (18)0.3349 (3)0.0622 (10)
H16A1.01030.39300.32210.075*
C170.9213 (5)0.33164 (18)0.4271 (2)0.0592 (9)
H17A0.91970.36870.47370.071*
C180.8714 (5)0.26248 (17)0.4477 (2)0.0511 (8)
H18A0.83650.25150.50900.061*
C190.8732 (4)0.20771 (15)0.3752 (2)0.0388 (7)
C200.8320 (4)0.13278 (15)0.3885 (2)0.0371 (7)
C210.9291 (6)0.1623 (3)0.7300 (3)0.1045 (16)
H21A0.90030.18770.78750.157*
H21B1.03530.18530.70750.157*
H21C0.96100.11270.74780.157*
N10.6392 (5)−0.04524 (19)0.8570 (2)0.0749 (9)
N20.7870 (3)0.01301 (12)0.34899 (16)0.0406 (6)
N30.7950 (3)0.09555 (12)0.47126 (17)0.0390 (6)
H3B0.78910.11370.52910.047*
N40.9610 (4)0.19635 (14)0.11301 (19)0.0550 (7)
N50.9787 (4)0.29620 (13)0.26399 (19)0.0513 (7)
O10.7700 (4)0.16399 (13)0.65327 (16)0.0640 (7)
H1E0.65780.17810.68230.14 (2)*
U11U22U33U12U13U23
C10.050 (2)0.061 (2)0.044 (2)−0.0024 (16)0.0072 (16)0.0113 (16)
C20.0349 (16)0.050 (2)0.0432 (18)0.0017 (13)0.0034 (14)0.0069 (14)
C30.051 (2)0.0400 (19)0.063 (2)−0.0021 (14)0.0118 (17)0.0147 (16)
C40.055 (2)0.0383 (19)0.070 (2)−0.0027 (14)0.0155 (18)−0.0017 (17)
C50.0488 (19)0.050 (2)0.052 (2)−0.0018 (15)0.0117 (16)−0.0018 (16)
C60.0300 (16)0.0410 (17)0.0446 (17)0.0024 (12)0.0063 (13)0.0044 (13)
C70.0409 (17)0.0381 (17)0.0426 (18)−0.0026 (13)0.0060 (14)0.0031 (13)
C80.0345 (16)0.0416 (17)0.0414 (17)0.0021 (12)0.0074 (13)0.0001 (13)
C90.0359 (16)0.0419 (18)0.0382 (16)−0.0003 (12)0.0051 (13)0.0016 (13)
C100.0351 (16)0.0460 (18)0.0361 (16)0.0024 (13)0.0062 (13)−0.0013 (13)
C110.053 (2)0.0483 (19)0.0457 (19)0.0018 (15)0.0095 (16)−0.0034 (15)
C120.070 (2)0.062 (2)0.0386 (19)0.0111 (17)0.0105 (17)−0.0064 (16)
C130.078 (3)0.066 (2)0.0375 (19)0.0088 (19)0.0183 (17)0.0087 (17)
C140.0407 (17)0.0470 (19)0.0357 (16)0.0054 (13)0.0071 (13)0.0038 (13)
C150.0378 (17)0.0422 (18)0.0422 (17)0.0020 (13)0.0077 (14)0.0027 (13)
C160.087 (3)0.0392 (19)0.063 (2)−0.0115 (17)0.021 (2)−0.0003 (17)
C170.079 (3)0.049 (2)0.052 (2)−0.0060 (17)0.0183 (18)−0.0075 (16)
C180.064 (2)0.049 (2)0.0429 (18)−0.0016 (16)0.0161 (16)−0.0037 (15)
C190.0389 (17)0.0409 (18)0.0377 (16)0.0005 (12)0.0099 (13)−0.0005 (13)
C200.0347 (16)0.0436 (18)0.0345 (16)0.0030 (12)0.0103 (13)0.0041 (13)
C210.082 (3)0.134 (4)0.092 (3)0.011 (3)−0.002 (3)−0.042 (3)
N10.071 (2)0.100 (3)0.053 (2)−0.0063 (18)0.0090 (17)0.0078 (18)
N20.0423 (15)0.0424 (15)0.0386 (14)−0.0004 (11)0.0114 (11)0.0001 (11)
N30.0434 (14)0.0430 (15)0.0322 (13)0.0006 (11)0.0110 (11)−0.0003 (11)
N40.073 (2)0.0573 (18)0.0366 (15)0.0024 (14)0.0161 (14)0.0035 (13)
N50.0651 (18)0.0425 (16)0.0489 (16)−0.0064 (13)0.0171 (13)−0.0016 (12)
O10.0695 (17)0.0778 (17)0.0474 (14)0.0083 (13)0.0177 (13)−0.0119 (12)
C1—N11.145 (4)C12—H12A0.9300
C1—C21.444 (4)C13—N41.323 (4)
C2—C31.388 (4)C13—H13A0.9300
C2—C71.393 (4)C14—N41.361 (4)
C3—C41.376 (4)C14—C151.471 (4)
C3—H3A0.9300C15—N51.365 (4)
C4—C51.387 (4)C15—C191.416 (4)
C4—H4A0.9300C16—N51.328 (4)
C5—C61.392 (4)C16—C171.393 (4)
C5—H5A0.9300C16—H16A0.9300
C6—C71.400 (4)C17—C181.362 (4)
C6—C81.465 (4)C17—H17A0.9300
C7—H7A0.9300C18—C191.409 (4)
C8—N21.324 (3)C18—H18A0.9300
C8—N31.371 (3)C19—C201.426 (4)
C9—C201.378 (4)C20—N31.377 (3)
C9—N21.383 (3)C21—O11.400 (4)
C9—C101.439 (4)C21—H21A0.9600
C10—C111.403 (4)C21—H21B0.9600
C10—C141.412 (4)C21—H21C0.9600
C11—C121.371 (4)N3—H3B0.8600
C11—H11A0.9300O1—H1E0.9842
C12—C131.392 (5)
N1—C1—C2179.2 (4)C12—C13—H13A117.4
C3—C2—C7120.2 (3)N4—C14—C10122.4 (3)
C3—C2—C1120.2 (3)N4—C14—C15117.3 (3)
C7—C2—C1119.5 (3)C10—C14—C15120.3 (3)
C4—C3—C2119.6 (3)N5—C15—C19121.3 (3)
C4—C3—H3A120.2N5—C15—C14118.0 (3)
C2—C3—H3A120.2C19—C15—C14120.8 (3)
C3—C4—C5120.6 (3)N5—C16—C17124.4 (3)
C3—C4—H4A119.7N5—C16—H16A117.8
C5—C4—H4A119.7C17—C16—H16A117.8
C4—C5—C6120.8 (3)C18—C17—C16118.6 (3)
C4—C5—H5A119.6C18—C17—H17A120.7
C6—C5—H5A119.6C16—C17—H17A120.7
C5—C6—C7118.4 (3)C17—C18—C19119.3 (3)
C5—C6—C8119.6 (3)C17—C18—H18A120.3
C7—C6—C8122.0 (3)C19—C18—H18A120.3
C2—C7—C6120.4 (3)C18—C19—C15118.5 (3)
C2—C7—H7A119.8C18—C19—C20125.1 (3)
C6—C7—H7A119.8C15—C19—C20116.4 (3)
N2—C8—N3112.4 (2)N3—C20—C9105.4 (2)
N2—C8—C6124.3 (3)N3—C20—C19131.0 (3)
N3—C8—C6123.2 (3)C9—C20—C19123.6 (3)
C20—C9—N2111.0 (3)O1—C21—H21A109.5
C20—C9—C10120.9 (3)O1—C21—H21B109.5
N2—C9—C10128.1 (3)H21A—C21—H21B109.5
C11—C10—C14118.3 (3)O1—C21—H21C109.5
C11—C10—C9124.1 (3)H21A—C21—H21C109.5
C14—C10—C9117.6 (3)H21B—C21—H21C109.5
C12—C11—C10119.0 (3)C8—N2—C9104.4 (2)
C12—C11—H11A120.5C8—N3—C20106.8 (2)
C10—C11—H11A120.5C8—N3—H3B126.6
C11—C12—C13118.4 (3)C20—N3—H3B126.6
C11—C12—H12A120.8C13—N4—C14116.7 (3)
C13—C12—H12A120.8C16—N5—C15117.8 (3)
N4—C13—C12125.2 (3)C21—O1—H1E108.4
N4—C13—H13A117.4
D—H···AD—HH···AD···AD—H···A
N3—H3B···O10.861.952.803 (3)174
O1—H1E···N5i0.981.892.857 (3)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3B⋯O10.861.952.803 (3)174
O1—H1E⋯N5i0.981.892.857 (3)168

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-[4-(Dimethyl-amino)phen-yl]imidazo[4,5-f][1,10]phenanthroline sesquihydrate.

Authors:  Gang-Qiang Yin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-07

3.  2-(1H-Imidazo[4,5-f][1,10]phenanthrolin-2-yl)phenol monohydrate.

Authors:  Wen-Zhi Zhang; Li Li; Ying-Hui Xiao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-25
  3 in total

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