Literature DB >> 21202651

(S)-2-(Pyrrolidinium-2-ylmethyl-sulfan-yl)pyridinium dibromide.

Shuai Zhang1, Yifeng Wang, Aibao Xia, Shuping Luo.   

Abstract

In the title compound, C(10)H(16)N(2)S(2+)·2Br(-), the pyrrolidine ring displays an envelope conformation, with the flap C atom lying 0.484 (5) Å out of the plane of the rest of the pyrrolidine ring. The thio-ether group connects the pyridine ring and the 2-methyl-pyrrolidine group. Both pyrrolidine NH bonds form hydrogen bonds to the bromide anions. These hydrogen bonds link the cations and anions in a helical chain along the c axis.

Entities:  

Year:  2008        PMID: 21202651      PMCID: PMC2961376          DOI: 10.1107/S1600536808008313

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Ishii et al. (2004 ▶); Xu et al. (2007 ▶); Larson (1970 ▶).

Experimental

Crystal data

C10H16N2S22Br M = 356.12 Trigonal, a = 8.9892 (9) Å c = 15.4567 (14) Å V = 1081.66 (18) Å3 Z = 3 Mo Kα radiation μ = 5.76 mm−1 T = 296 (1) K 0.35 × 0.30 × 0.23 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi,1995 ▶) T min = 0.162, T max = 0.266 10585 measured reflections 3169 independent reflections 1902 reflections with F 2 > 2.0σ(F 2) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.108 S = 1.01 3169 reflections 138 parameters H-atom parameters constrained Δρmax = 0.67 e Å−3 Δρmin = −0.53 e Å−3 Absolute structure: Flack (1983 ▶), 1037 Friedel pairs Flack parameter: 0.017 (2) Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808008313/pk2087sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808008313/pk2087Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H16N2S2+·2BrZ = 3
Mr = 356.12F000 = 528.00
Trigonal, P32Dx = 1.640 Mg m3
Hall symbol: P 32Mo Kα radiation λ = 0.71073 Å
a = 8.9892 (9) ÅCell parameters from 5169 reflections
b = 8.9892 (9) Åθ = 3.7–27.4º
c = 15.4567 (14) ŵ = 5.76 mm1
α = 90ºT = 296 (1) K
β = 90ºChunk, colorless
γ = 120º0.35 × 0.30 × 0.23 mm
V = 1081.66 (18) Å3
Rigaku R-AXIS RAPID diffractometer1902 reflections with F2 > 2.0σ(F2)
Detector resolution: 10.00 pixels mm-1Rint = 0.061
ω scansθmax = 27.4º
Absorption correction: multi-scan(ABSCOR; Higashi,1995)h = −11→11
Tmin = 0.162, Tmax = 0.266k = −11→10
10585 measured reflectionsl = −18→20
3169 independent reflections
Refinement on F2(Δ/σ)max = 0.013
R[F2 > 2σ(F2)] = 0.036Δρmax = 0.67 e Å3
wR(F2) = 0.108Δρmin = −0.53 e Å3
S = 1.01Extinction correction: Larson (1970) Crystallographic Computing eq. 22
3169 reflectionsExtinction coefficient: 385 (18)
138 parametersAbsolute structure: Flack (1983), 1037 Friedel Pairs
H-atom parameters constrainedFlack parameter: 0.017 (2)
  w = 1/[0.7600σ(Fo2)]/(4Fo2)
Refinement. Refinement using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
Br10.51453 (17)0.87503 (13)0.16904 (9)0.1032 (4)
Br20.10004 (11)0.14553 (10)0.04190 (9)0.0605 (2)
S10.0678 (3)0.4733 (3)0.31433 (12)0.0671 (7)
N10.4515 (9)0.5570 (8)0.2963 (3)0.067 (2)
N20.0359 (7)0.6865 (8)0.2110 (3)0.053 (2)
C10.3184 (9)0.4069 (9)0.2462 (4)0.053 (2)
C20.3905 (11)0.2858 (11)0.2388 (5)0.071 (3)
C30.5771 (13)0.4004 (16)0.2379 (8)0.086 (5)
C40.6121 (14)0.5513 (18)0.2933 (7)0.077 (5)
C50.1434 (10)0.3261 (10)0.2879 (4)0.059 (2)
C60.0388 (9)0.5412 (9)0.2143 (4)0.050 (2)
C70.0160 (10)0.4576 (10)0.1352 (4)0.059 (2)
C8−0.0040 (10)0.5283 (11)0.0612 (4)0.066 (2)
C9−0.0037 (10)0.6817 (12)0.0635 (4)0.067 (2)
C100.0138 (10)0.7576 (11)0.1396 (4)0.062 (2)
H10.31050.44600.18800.064*
H20.46730.65110.27350.080*
H30.41870.55090.34910.080*
H70.01440.35340.13300.071*
H8−0.01800.47240.00870.079*
H9−0.01540.73100.01300.080*
H100.01080.85930.14320.074*
H210.35600.20850.28790.085*
H220.35220.21950.18570.085*
H310.61690.43770.17930.103*
H320.63430.34210.26140.103*
H410.64500.53690.35110.092*
H420.70330.65640.26820.092*
H510.14770.27080.34090.071*
H520.06140.24030.24840.071*
H2010.04940.74030.25900.064*
U11U22U33U12U13U23
Br10.1369 (10)0.0925 (8)0.0513 (4)0.0357 (7)0.0061 (5)0.0034 (4)
Br20.0670 (6)0.0510 (5)0.0630 (4)0.0292 (4)0.0073 (4)0.0054 (3)
S10.0848 (16)0.0802 (16)0.0554 (11)0.0555 (14)0.0125 (10)0.0098 (10)
N10.072 (4)0.063 (4)0.053 (3)0.026 (4)−0.001 (3)−0.006 (3)
N20.055 (4)0.055 (4)0.053 (3)0.029 (3)0.011 (2)0.003 (2)
C10.052 (4)0.046 (4)0.058 (4)0.022 (4)−0.001 (3)−0.001 (3)
C20.055 (5)0.082 (6)0.084 (5)0.040 (5)0.000 (4)−0.005 (4)
C30.070 (8)0.088 (10)0.090 (14)0.032 (7)0.004 (7)0.000 (10)
C40.061 (7)0.083 (14)0.093 (10)0.041 (9)−0.004 (6)−0.003 (10)
C50.051 (5)0.063 (5)0.065 (5)0.030 (4)0.011 (3)0.009 (3)
C60.056 (5)0.041 (4)0.060 (4)0.030 (4)0.008 (3)−0.003 (3)
C70.075 (5)0.056 (5)0.055 (4)0.040 (4)0.002 (3)0.002 (3)
C80.071 (6)0.078 (6)0.053 (4)0.041 (5)0.001 (3)0.001 (4)
C90.077 (6)0.082 (6)0.053 (4)0.049 (5)−0.002 (3)0.002 (4)
C100.088 (6)0.061 (5)0.050 (4)0.048 (5)0.002 (3)0.009 (3)
S1—C51.811 (11)N1—H30.860
S1—C61.729 (7)N2—H2010.860
N1—C11.496 (8)C1—H10.980
N1—C41.471 (18)C2—H210.970
N2—C61.321 (12)C2—H220.970
N2—C101.339 (10)C3—H310.970
C1—C21.524 (16)C3—H320.970
C1—C51.508 (10)C4—H410.970
C2—C31.465 (12)C4—H420.970
C3—C41.499 (9)C5—H510.970
C6—C71.396 (9)C5—H520.970
C7—C81.363 (12)C7—H70.930
C8—C91.379 (16)C8—H80.930
C9—C101.329 (10)C9—H90.930
N1—H20.860C10—H100.930
C5—S1—C6103.5 (4)C1—C2—H22110.8
C1—N1—C4108.0 (8)C3—C2—H21110.8
C6—N2—C10125.8 (6)C3—C2—H22110.8
N1—C1—C2104.4 (7)H21—C2—H22109.5
N1—C1—C5112.6 (6)C2—C3—H31110.3
C2—C1—C5113.7 (6)C2—C3—H32110.3
C1—C2—C3104.2 (8)C4—C3—H31110.3
C2—C3—C4106.2 (11)C4—C3—H32110.3
N1—C4—C3106.5 (8)H31—C3—H32109.5
S1—C5—C1115.3 (6)N1—C4—H41110.2
S1—C6—N2117.7 (5)N1—C4—H42110.2
S1—C6—C7126.9 (7)C3—C4—H41110.2
N2—C6—C7115.4 (7)C3—C4—H42110.2
C6—C7—C8120.2 (9)H41—C4—H42109.5
C7—C8—C9120.7 (7)S1—C5—H51108.0
C8—C9—C10118.4 (8)S1—C5—H52108.0
N2—C10—C9119.5 (10)C1—C5—H51108.0
C1—N1—H2109.8C1—C5—H52108.0
C1—N1—H3109.8H51—C5—H52109.5
C4—N1—H2109.8C6—C7—H7119.9
C4—N1—H3109.8C8—C7—H7119.9
H2—N1—H3109.5C7—C8—H8119.7
C6—N2—H201117.1C9—C8—H8119.7
C10—N2—H201117.1C8—C9—H9120.8
N1—C1—H1108.7C10—C9—H9120.8
C2—C1—H1108.7N2—C10—H10120.2
C5—C1—H1108.7C9—C10—H10120.2
C1—C2—H21110.8
C5—S1—C6—N2−159.4 (5)N1—C1—C5—S151.7 (8)
C5—S1—C6—C721.3 (8)C2—C1—C5—S1170.2 (5)
C6—S1—C5—C166.8 (5)C5—C1—C2—C3−153.7 (7)
C1—N1—C4—C32.2 (10)C1—C2—C3—C432.4 (11)
C4—N1—C1—C217.3 (7)C2—C3—C4—N1−22.0 (12)
C4—N1—C1—C5141.1 (8)S1—C6—C7—C8−179.4 (6)
C6—N2—C10—C9−1.5 (12)N2—C6—C7—C81.2 (11)
C10—N2—C6—S1−179.6 (5)C6—C7—C8—C9−0.6 (10)
C10—N2—C6—C7−0.1 (9)C7—C8—C9—C10−1.0 (12)
N1—C1—C2—C3−30.6 (8)C8—C9—C10—N22.1 (12)
D—H···AD—HH···AD···AD—H···A
N1—H2···Br10.862.453.278 (7)163
N1—H3···Br1i0.862.433.271 (5)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H2⋯Br10.862.453.278 (7)163
N1—H3⋯Br1i0.862.433.271 (5)165

Symmetry code: (i) .

  2 in total

1.  A new class of chiral pyrrolidine-pyridine conjugate base catalysts for use in asymmetric Michael addition reactions.

Authors:  Takaaki Ishii; Shingo Fujioka; Yusuke Sekiguchi; Hiyoshizo Kotsuki
Journal:  J Am Chem Soc       Date:  2004-08-11       Impact factor: 15.419

2.  Organocatalysts wrapped around by poly(ethylene glycol)s (PEGs): a unique host-guest system for asymmetric Michael addition reactions.

Authors:  Dan Qian Xu; Shu Ping Luo; Yi Feng Wang; Ai Bao Xia; Hua Dong Yue; Li Ping Wang; Zhen Yuan Xu
Journal:  Chem Commun (Camb)       Date:  2007-08-17       Impact factor: 6.222

  2 in total

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