Literature DB >> 21202395

2-[2-(1H-indol-3-yl)ethyl-iminiomethyl]-4-nitro-phenolate.

Hapipah M Ali1, M I Mohamed Mustafa, M Razali Rizal, Seik Weng Ng.   

Abstract

The title Schiff base, C(17)H(15)N(3)O(3), exists in the zwitterionic form with the phenol H atom transferred to the imine group. Adjacent zwitterions are linked into a linear chain running along the a axis by an indole-hydr-oxy N-H⋯O hydrogen bond [3.100 (2) Å].

Entities:  

Year:  2008        PMID: 21202395      PMCID: PMC2961249          DOI: 10.1107/S1600536808011185

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the zwitterionic 2-{[3-(indol-3-yl)propen­yl]methyl­ammonio}-4-methyl­phenolate, see: Ali et al. (2007 ▶).

Experimental

Crystal data

C17H15N3O3 M = 309.32 Monoclinic, a = 14.5990 (7) Å b = 9.5027 (5) Å c = 21.5373 (10) Å β = 95.712 (2)° V = 2973.0 (3) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 139 (2) K 0.51 × 0.30 × 0.19 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: none 6383 measured reflections 3312 independent reflections 2403 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.161 S = 1.06 3312 reflections 216 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.18 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011185/bv2090sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011185/bv2090Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15N3O3F(000) = 1296
Mr = 309.32Dx = 1.382 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -c 2ycCell parameters from 2068 reflections
a = 14.5990 (7) Åθ = 5.1–59.5°
b = 9.5027 (5) ŵ = 0.10 mm1
c = 21.5373 (10) ÅT = 139 K
β = 95.712 (2)°Irregular, yellow
V = 2973.0 (3) Å30.51 × 0.30 × 0.19 mm
Z = 8
Bruker APEXII diffractometer2403 reflections with I > 2σ(I)
Radiation source: medium-focus sealed tubeRint = 0.023
graphiteθmax = 27.5°, θmin = 1.9°
φ and ω scansh = −14→18
6383 measured reflectionsk = −12→9
3312 independent reflectionsl = −27→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0911P)2 + 1.065P] where P = (Fo2 + 2Fc2)/3
3312 reflections(Δ/σ)max = 0.001
216 parametersΔρmax = 1.18 e Å3
2 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.60196 (9)0.52975 (15)0.49373 (6)0.0348 (3)
O21.01389 (10)0.6546 (2)0.56727 (9)0.0596 (5)
O30.95763 (10)0.75509 (18)0.64477 (7)0.0501 (5)
N10.94781 (11)0.68697 (19)0.59563 (8)0.0377 (4)
N20.53650 (11)0.61992 (16)0.59452 (7)0.0278 (4)
N30.16678 (11)0.81046 (17)0.64386 (8)0.0308 (4)
C10.68118 (12)0.56415 (18)0.51803 (8)0.0254 (4)
C20.76150 (13)0.54714 (19)0.48512 (8)0.0286 (4)
H20.75470.50850.44420.034*
C30.84661 (13)0.58457 (19)0.51059 (9)0.0283 (4)
H30.89860.57050.48800.034*
C40.85759 (12)0.64418 (19)0.57044 (9)0.0273 (4)
C50.78428 (12)0.66384 (18)0.60489 (8)0.0258 (4)
H50.79350.70370.64550.031*
C60.69633 (12)0.62481 (18)0.57975 (8)0.0241 (4)
C70.62047 (12)0.65009 (18)0.61477 (8)0.0258 (4)
H70.63210.69110.65500.031*
C80.45617 (12)0.6528 (2)0.62664 (9)0.0285 (4)
H8A0.47610.68350.66980.034*
H8B0.41770.56750.62880.034*
C90.39951 (13)0.7694 (2)0.59244 (9)0.0303 (4)
H9A0.43750.85560.59180.036*
H9B0.38230.74020.54870.036*
C100.31404 (12)0.80148 (19)0.62293 (8)0.0253 (4)
C110.22563 (13)0.77101 (19)0.60122 (9)0.0298 (4)
H110.20720.72840.56210.036*
C120.21685 (12)0.86790 (19)0.69435 (9)0.0269 (4)
C130.18875 (15)0.9262 (2)0.74883 (10)0.0391 (5)
H130.12590.92620.75670.047*
C140.25584 (18)0.9837 (3)0.79057 (10)0.0482 (6)
H140.23871.02380.82810.058*
C150.34794 (18)0.9848 (2)0.77940 (10)0.0467 (6)
H150.39231.02670.80900.056*
C160.37574 (14)0.9260 (2)0.72603 (9)0.0349 (5)
H160.43890.92650.71880.042*
C170.30999 (12)0.86553 (18)0.68270 (8)0.0240 (4)
H2N0.5301 (16)0.578 (2)0.5578 (6)0.047 (7)*
H3N0.1078 (8)0.790 (3)0.6400 (11)0.052 (7)*
U11U22U33U12U13U23
O10.0221 (7)0.0421 (8)0.0390 (8)−0.0044 (6)−0.0020 (6)−0.0080 (6)
O20.0177 (8)0.0831 (13)0.0789 (12)−0.0053 (8)0.0097 (8)−0.0235 (10)
O30.0286 (9)0.0690 (12)0.0514 (9)−0.0109 (8)−0.0022 (7)−0.0173 (8)
N10.0197 (9)0.0436 (10)0.0493 (10)−0.0028 (7)0.0012 (7)−0.0020 (8)
N20.0194 (8)0.0308 (8)0.0334 (8)0.0039 (6)0.0040 (6)−0.0015 (6)
N30.0162 (8)0.0303 (8)0.0452 (9)−0.0007 (6)0.0001 (7)−0.0016 (7)
C10.0211 (9)0.0229 (8)0.0316 (9)0.0007 (7)−0.0006 (7)0.0002 (7)
C20.0290 (10)0.0274 (9)0.0298 (9)0.0004 (8)0.0041 (8)−0.0010 (7)
C30.0229 (9)0.0273 (9)0.0357 (10)0.0014 (7)0.0076 (7)0.0024 (8)
C40.0164 (9)0.0269 (9)0.0378 (10)−0.0005 (7)−0.0007 (7)0.0025 (7)
C50.0216 (9)0.0243 (9)0.0311 (9)−0.0001 (7)0.0004 (7)0.0001 (7)
C60.0194 (9)0.0224 (8)0.0305 (9)0.0013 (7)0.0020 (7)0.0017 (7)
C70.0225 (10)0.0241 (8)0.0305 (9)0.0029 (7)0.0013 (7)0.0016 (7)
C80.0202 (10)0.0343 (10)0.0319 (9)0.0042 (7)0.0069 (7)0.0022 (7)
C90.0269 (10)0.0329 (10)0.0319 (9)0.0082 (8)0.0063 (8)0.0027 (8)
C100.0226 (9)0.0255 (8)0.0275 (9)0.0044 (7)0.0012 (7)0.0012 (7)
C110.0281 (10)0.0276 (9)0.0323 (9)0.0039 (8)−0.0047 (8)−0.0027 (7)
C120.0209 (9)0.0258 (9)0.0341 (9)0.0029 (7)0.0031 (7)0.0033 (7)
C130.0362 (12)0.0413 (11)0.0422 (11)0.0092 (9)0.0162 (9)0.0023 (9)
C140.0619 (16)0.0498 (13)0.0336 (11)0.0158 (12)0.0087 (11)−0.0085 (10)
C150.0499 (14)0.0478 (13)0.0388 (11)0.0072 (11)−0.0129 (10)−0.0144 (10)
C160.0262 (10)0.0361 (10)0.0406 (11)0.0029 (8)−0.0063 (8)−0.0047 (8)
C170.0190 (9)0.0239 (8)0.0286 (9)0.0034 (7)0.0005 (7)0.0006 (7)
O1—C11.264 (2)C7—H70.9500
O2—N11.231 (2)C8—C91.527 (3)
O3—N11.237 (2)C8—H8A0.9900
N1—C41.433 (2)C8—H8B0.9900
N2—C71.292 (2)C9—C101.498 (2)
N2—C81.454 (2)C9—H9A0.9900
N2—H2N0.883 (10)C9—H9B0.9900
N3—C121.363 (3)C10—C111.359 (3)
N3—C111.371 (2)C10—C171.430 (2)
N3—H3N0.879 (10)C11—H110.9500
C1—C21.439 (2)C12—C131.396 (3)
C1—C61.446 (3)C12—C171.407 (2)
C2—C31.355 (3)C13—C141.375 (3)
C2—H20.9500C13—H130.9500
C3—C41.402 (3)C14—C151.389 (4)
C3—H30.9500C14—H140.9500
C4—C51.375 (2)C15—C161.375 (3)
C5—C61.393 (3)C15—H150.9500
C5—H50.9500C16—C171.394 (3)
C6—C71.421 (2)C16—H160.9500
O2—N1—O3121.71 (18)N2—C8—H8B109.5
O2—N1—C4118.51 (17)C9—C8—H8B109.5
O3—N1—C4119.78 (16)H8A—C8—H8B108.1
C7—N2—C8125.09 (16)C10—C9—C8111.78 (14)
C7—N2—H2N114.5 (16)C10—C9—H9A109.3
C8—N2—H2N120.4 (16)C8—C9—H9A109.3
C12—N3—C11108.79 (15)C10—C9—H9B109.3
C12—N3—H3N127.4 (16)C8—C9—H9B109.3
C11—N3—H3N123.3 (16)H9A—C9—H9B107.9
O1—C1—C2121.60 (16)C11—C10—C17106.10 (15)
O1—C1—C6122.27 (16)C11—C10—C9127.56 (17)
C2—C1—C6116.12 (16)C17—C10—C9126.29 (17)
C3—C2—C1122.05 (17)C10—C11—N3110.38 (16)
C3—C2—H2119.0C10—C11—H11124.8
C1—C2—H2119.0N3—C11—H11124.8
C2—C3—C4119.64 (16)N3—C12—C13130.60 (18)
C2—C3—H3120.2N3—C12—C17107.60 (15)
C4—C3—H3120.2C13—C12—C17121.76 (19)
C5—C4—C3121.81 (17)C14—C13—C12117.22 (19)
C5—C4—N1119.53 (17)C14—C13—H13121.4
C3—C4—N1118.65 (16)C12—C13—H13121.4
C4—C5—C6119.41 (17)C13—C14—C15121.91 (19)
C4—C5—H5120.3C13—C14—H14119.0
C6—C5—H5120.3C15—C14—H14119.0
C5—C6—C7119.05 (16)C16—C15—C14120.9 (2)
C5—C6—C1120.95 (16)C16—C15—H15119.6
C7—C6—C1119.97 (16)C14—C15—H15119.6
N2—C7—C6123.14 (17)C15—C16—C17119.08 (19)
N2—C7—H7118.4C15—C16—H16120.5
C6—C7—H7118.4C17—C16—H16120.5
N2—C8—C9110.52 (14)C16—C17—C12119.15 (17)
N2—C8—H8A109.5C16—C17—C10133.65 (16)
C9—C8—H8A109.5C12—C17—C10107.12 (16)
O1—C1—C2—C3179.54 (17)C8—C9—C10—C11−108.7 (2)
C6—C1—C2—C30.6 (3)C8—C9—C10—C1768.3 (2)
C1—C2—C3—C4−1.2 (3)C17—C10—C11—N3−0.7 (2)
C2—C3—C4—C51.2 (3)C9—C10—C11—N3176.80 (17)
C2—C3—C4—N1−178.08 (17)C12—N3—C11—C100.1 (2)
O2—N1—C4—C5172.08 (18)C11—N3—C12—C13178.3 (2)
O3—N1—C4—C5−8.1 (3)C11—N3—C12—C170.5 (2)
O2—N1—C4—C3−8.7 (3)N3—C12—C13—C14−176.5 (2)
O3—N1—C4—C3171.20 (18)C17—C12—C13—C141.0 (3)
C3—C4—C5—C6−0.5 (3)C12—C13—C14—C150.2 (3)
N1—C4—C5—C6178.68 (16)C13—C14—C15—C16−0.9 (4)
C4—C5—C6—C7−177.79 (16)C14—C15—C16—C170.4 (3)
C4—C5—C6—C1−0.1 (3)C15—C16—C17—C120.8 (3)
O1—C1—C6—C5−178.92 (17)C15—C16—C17—C10177.4 (2)
C2—C1—C6—C50.1 (2)N3—C12—C17—C16176.45 (17)
O1—C1—C6—C7−1.2 (3)C13—C12—C17—C16−1.5 (3)
C2—C1—C6—C7177.77 (16)N3—C12—C17—C10−0.9 (2)
C8—N2—C7—C6−175.39 (16)C13—C12—C17—C10−178.93 (18)
C5—C6—C7—N2178.55 (16)C11—C10—C17—C16−175.9 (2)
C1—C6—C7—N20.8 (3)C9—C10—C17—C166.6 (3)
C7—N2—C8—C9109.1 (2)C11—C10—C17—C121.0 (2)
N2—C8—C9—C10177.58 (15)C9—C10—C17—C12−176.53 (17)
D—H···AD—HH···AD···AD—H···A
N2—H2n···O10.88 (1)1.87 (2)2.602 (2)139 (2)
N3—H3n···O2i0.88 (1)2.36 (2)3.027 (2)133 (2)
N3—H3n···O3i0.88 (1)2.23 (1)3.100 (2)171 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2n⋯O10.88 (1)1.87 (2)2.602 (2)139 (2)
N3—H3n⋯O2i0.88 (1)2.36 (2)3.027 (2)133 (2)
N3—H3n⋯O3i0.88 (1)2.23 (1)3.100 (2)171 (2)

Symmetry code: (i) .

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