Literature DB >> 21577552

2-[(E)-2-(4-Methyl-benzene-sulfonamido)ethyl-iminiometh-yl]-4-nitro-phenolate.

Marife Tüfekçi, Gökhan Alpaslan, Mustafa Macit, Ahmet Erdönmez.   

Abstract

The mol-ecule of the title compound, C(16)H(17)N(3)O(5)S, crystallizes in a zwitterionic form, with a strong intra-molecular N-H⋯O hydrogen bond. The dihedral angle between the two benzene rings is 7.06 (9)°. In the crystal, mol-ecules are linked into chains along the c axis by inter-molecular N-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21577552      PMCID: PMC2969864          DOI: 10.1107/S1600536809031481

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to Schiff bases, see: Calligaris et al. (1972 ▶); Cohen et al. (1964 ▶); Hadjoudis et al. (1987 ▶); Karabıyık et al. (2008 ▶). For the crystal structure of 2-[2-(1H-indol-3-yl)ethyl­iminiometh­yl]-4-nitro­phenolate, see: Ali et al. (2008 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H17N3O5S M = 363.39 Monoclinic, a = 17.915 (5) Å b = 7.342 (5) Å c = 13.055 (5) Å β = 103.928 (5)° V = 1666.7 (14) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 296 K 0.68 × 0.50 × 0.26 mm

Data collection

Stoe IPDS-II diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.887, T max = 0.956 22908 measured reflections 3272 independent reflections 2845 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.094 S = 1.07 3272 reflections 236 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.27 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809031481/ci2882sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809031481/ci2882Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17N3O5SF(000) = 760
Mr = 363.39Dx = 1.448 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71069 Å
Hall symbol: -P 2ybcCell parameters from 37649 reflections
a = 17.915 (5) Åθ = 1.6–28.0°
b = 7.342 (5) ŵ = 0.23 mm1
c = 13.055 (5) ÅT = 296 K
β = 103.928 (5)°Block, yellow
V = 1666.7 (14) Å30.68 × 0.50 × 0.26 mm
Z = 4
Stoe IPDS-II diffractometer3272 independent reflections
Radiation source: fine-focus sealed tube2845 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 6.67 pixels mm-1θmax = 26.0°, θmin = 2.3°
ω scansh = −22→22
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −9→9
Tmin = 0.887, Tmax = 0.956l = −16→15
22908 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.094w = 1/[σ2(Fo2) + (0.0542P)2 + 0.2378P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.004
3272 reflectionsΔρmax = 0.26 e Å3
236 parametersΔρmin = −0.27 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0025 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.73857 (9)0.1439 (2)0.58535 (12)0.0464 (3)
C20.81399 (10)0.1345 (2)0.64584 (14)0.0559 (4)
H20.82380.14050.71900.067*
C30.87338 (10)0.1163 (3)0.59823 (15)0.0604 (4)
C40.86008 (11)0.1075 (3)0.48830 (16)0.0648 (5)
H40.90120.09580.45670.078*
C50.78743 (11)0.1160 (3)0.42812 (15)0.0642 (5)
H50.77960.10930.35520.077*
C60.72214 (10)0.1346 (2)0.47198 (13)0.0523 (4)
C70.67882 (9)0.1617 (2)0.63841 (13)0.0463 (3)
H70.69250.16480.71180.056*
C80.54749 (9)0.1973 (2)0.65034 (13)0.0466 (4)
H8A0.56610.15050.72140.056*
H8B0.50240.12750.61620.056*
C90.52559 (8)0.3947 (2)0.65549 (12)0.0438 (3)
H9A0.50850.44190.58430.053*
H9B0.48290.40350.68890.053*
C100.69671 (8)0.65737 (19)0.62312 (11)0.0400 (3)
C110.69016 (9)0.6244 (2)0.51721 (12)0.0495 (4)
H110.64200.61820.47050.059*
C120.75608 (10)0.6008 (3)0.48147 (13)0.0571 (4)
H120.75150.57810.41020.068*
C130.82838 (10)0.6100 (2)0.54833 (15)0.0553 (4)
C140.83365 (10)0.6421 (3)0.65479 (15)0.0601 (4)
H140.88180.64740.70150.072*
C150.76879 (9)0.6661 (2)0.69225 (13)0.0522 (4)
H150.77330.68820.76360.063*
C160.89969 (12)0.5917 (3)0.50703 (19)0.0795 (6)
H16A0.88630.54030.43740.119*
H16B0.93590.51360.55290.119*
H16C0.92230.70970.50450.119*
N10.95110 (10)0.1062 (3)0.66326 (18)0.0917 (6)
N20.60663 (7)0.17413 (18)0.59235 (11)0.0456 (3)
N30.58876 (7)0.50612 (18)0.71366 (10)0.0448 (3)
O10.96069 (10)0.1084 (5)0.75840 (16)0.1571 (12)
O21.00420 (9)0.0954 (4)0.62016 (16)0.1183 (7)
O30.65360 (7)0.1427 (2)0.41569 (9)0.0669 (4)
O40.55334 (6)0.75149 (15)0.58460 (9)0.0479 (3)
O50.63776 (6)0.81294 (15)0.76080 (9)0.0522 (3)
S10.614192 (19)0.69488 (5)0.67146 (3)0.03887 (13)
H10.6088 (10)0.478 (2)0.7710 (14)0.048 (5)*
H1A0.5970 (12)0.176 (3)0.5235 (17)0.067 (6)*
U11U22U33U12U13U23
C10.0470 (8)0.0456 (8)0.0471 (8)−0.0002 (6)0.0121 (7)−0.0028 (7)
C20.0522 (9)0.0660 (10)0.0494 (9)−0.0005 (8)0.0124 (7)0.0003 (8)
C30.0452 (9)0.0709 (11)0.0658 (11)0.0025 (8)0.0148 (8)0.0017 (9)
C40.0601 (11)0.0720 (12)0.0701 (12)0.0056 (9)0.0307 (9)−0.0012 (10)
C50.0709 (12)0.0753 (12)0.0507 (9)0.0086 (10)0.0232 (9)−0.0062 (9)
C60.0568 (10)0.0516 (9)0.0487 (9)0.0038 (7)0.0130 (7)−0.0072 (7)
C70.0505 (9)0.0449 (8)0.0432 (8)−0.0021 (6)0.0107 (7)−0.0007 (6)
C80.0438 (8)0.0475 (8)0.0502 (9)−0.0058 (6)0.0147 (7)0.0030 (7)
C90.0348 (7)0.0498 (8)0.0472 (8)−0.0037 (6)0.0109 (6)0.0008 (7)
C100.0389 (7)0.0409 (7)0.0399 (7)−0.0016 (6)0.0089 (6)0.0033 (6)
C110.0425 (8)0.0643 (10)0.0407 (8)−0.0008 (7)0.0079 (6)0.0049 (7)
C120.0556 (10)0.0750 (12)0.0440 (9)0.0037 (8)0.0185 (7)0.0086 (8)
C130.0469 (9)0.0583 (10)0.0651 (11)0.0003 (7)0.0222 (8)0.0094 (8)
C140.0378 (8)0.0749 (12)0.0637 (11)−0.0013 (8)0.0044 (7)0.0005 (9)
C150.0444 (8)0.0643 (10)0.0450 (8)0.0001 (7)0.0054 (7)−0.0027 (7)
C160.0553 (11)0.0987 (16)0.0943 (15)0.0034 (11)0.0372 (11)0.0117 (13)
N10.0490 (9)0.1412 (19)0.0847 (13)0.0029 (11)0.0154 (9)0.0064 (13)
N20.0471 (7)0.0463 (7)0.0444 (7)−0.0015 (5)0.0131 (6)−0.0026 (6)
N30.0466 (7)0.0521 (8)0.0328 (7)−0.0071 (6)0.0041 (5)0.0045 (6)
O10.0575 (10)0.327 (4)0.0791 (12)0.0105 (15)0.0021 (9)0.0096 (18)
O20.0494 (8)0.195 (2)0.1165 (14)0.0089 (11)0.0310 (9)−0.0005 (14)
O30.0600 (8)0.0888 (9)0.0472 (7)0.0093 (7)0.0038 (6)−0.0159 (6)
O40.0417 (5)0.0488 (6)0.0494 (6)0.0043 (4)0.0034 (5)0.0055 (5)
O50.0512 (6)0.0543 (6)0.0504 (6)−0.0036 (5)0.0108 (5)−0.0159 (5)
S10.03696 (19)0.0403 (2)0.0382 (2)0.00009 (14)0.00693 (14)−0.00238 (14)
C1—C21.393 (2)C10—C151.387 (2)
C1—C71.414 (2)C10—S11.7631 (15)
C1—C61.440 (2)C11—C121.381 (2)
C2—C31.362 (2)C11—H110.93
C2—H20.93C12—C131.378 (3)
C3—C41.399 (3)C12—H120.93
C3—N11.448 (3)C13—C141.390 (3)
C4—C51.350 (3)C13—C161.507 (2)
C4—H40.93C14—C151.376 (2)
C5—C61.427 (2)C14—H140.93
C5—H50.93C15—H150.93
C6—O31.272 (2)C16—H16A0.96
C7—N21.292 (2)C16—H16B0.96
C7—H70.93C16—H16C0.96
C8—N21.4529 (19)N1—O11.212 (3)
C8—C91.507 (2)N1—O21.219 (2)
C8—H8A0.97N2—H1A0.87 (2)
C8—H8B0.97N3—S11.5976 (16)
C9—N31.4537 (19)N3—H10.777 (18)
C9—H9A0.97O4—S11.4325 (11)
C9—H9B0.97O5—S11.4329 (12)
C10—C111.381 (2)
C2—C1—C7118.18 (15)C10—C11—C12119.13 (15)
C2—C1—C6120.72 (15)C10—C11—H11120.4
C7—C1—C6121.10 (15)C12—C11—H11120.4
C3—C2—C1120.26 (16)C13—C12—C11121.97 (16)
C3—C2—H2119.9C13—C12—H12119.0
C1—C2—H2119.9C11—C12—H12119.0
C2—C3—C4120.93 (17)C12—C13—C14117.95 (15)
C2—C3—N1118.96 (18)C12—C13—C16121.15 (18)
C4—C3—N1120.11 (17)C14—C13—C16120.87 (17)
C5—C4—C3119.81 (16)C15—C14—C13121.12 (16)
C5—C4—H4120.1C15—C14—H14119.4
C3—C4—H4120.1C13—C14—H14119.4
C4—C5—C6122.64 (17)C14—C15—C10119.75 (16)
C4—C5—H5118.7C14—C15—H15120.1
C6—C5—H5118.7C10—C15—H15120.1
O3—C6—C5122.91 (16)C13—C16—H16A109.5
O3—C6—C1121.46 (15)C13—C16—H16B109.5
C5—C6—C1115.63 (16)H16A—C16—H16B109.5
N2—C7—C1124.73 (15)C13—C16—H16C109.5
N2—C7—H7117.6H16A—C16—H16C109.5
C1—C7—H7117.6H16B—C16—H16C109.5
N2—C8—C9111.47 (12)O1—N1—O2122.7 (2)
N2—C8—H8A109.3O1—N1—C3118.65 (18)
C9—C8—H8A109.3O2—N1—C3118.7 (2)
N2—C8—H8B109.3C7—N2—C8122.67 (14)
C9—C8—H8B109.3C7—N2—H1A114.1 (14)
H8A—C8—H8B108.0C8—N2—H1A123.0 (14)
N3—C9—C8112.72 (13)C9—N3—S1123.98 (11)
N3—C9—H9A109.0C9—N3—H1118.3 (13)
C8—C9—H9A109.0S1—N3—H1117.4 (13)
N3—C9—H9B109.0O4—S1—O5119.20 (8)
C8—C9—H9B109.0O4—S1—N3107.39 (7)
H9A—C9—H9B107.8O5—S1—N3107.26 (8)
C11—C10—C15120.07 (14)O4—S1—C10107.82 (7)
C11—C10—S1120.62 (11)O5—S1—C10106.12 (7)
C15—C10—S1119.29 (12)N3—S1—C10108.74 (7)
C7—C1—C2—C3179.67 (16)C12—C13—C14—C15−0.7 (3)
C6—C1—C2—C30.0 (3)C16—C13—C14—C15177.35 (18)
C1—C2—C3—C40.2 (3)C13—C14—C15—C100.3 (3)
C1—C2—C3—N1−179.76 (18)C11—C10—C15—C140.1 (3)
C2—C3—C4—C5−0.4 (3)S1—C10—C15—C14−178.20 (13)
N1—C3—C4—C5179.6 (2)C2—C3—N1—O12.3 (4)
C3—C4—C5—C60.3 (3)C4—C3—N1—O1−177.7 (3)
C4—C5—C6—O3180.00 (19)C2—C3—N1—O2−177.8 (2)
C4—C5—C6—C10.0 (3)C4—C3—N1—O22.2 (4)
C2—C1—C6—O3179.83 (16)C1—C7—N2—C8−178.27 (14)
C7—C1—C6—O30.2 (3)C9—C8—N2—C796.71 (17)
C2—C1—C6—C5−0.1 (2)C8—C9—N3—S1131.22 (13)
C7—C1—C6—C5−179.75 (16)C9—N3—S1—O414.65 (14)
C2—C1—C7—N2179.17 (15)C9—N3—S1—O5143.88 (12)
C6—C1—C7—N2−1.2 (3)C9—N3—S1—C10−101.76 (13)
N2—C8—C9—N3−63.94 (17)C11—C10—S1—O4−21.41 (15)
C15—C10—C11—C12−0.1 (2)C15—C10—S1—O4156.87 (13)
S1—C10—C11—C12178.14 (13)C11—C10—S1—O5−150.18 (13)
C10—C11—C12—C13−0.3 (3)C15—C10—S1—O528.09 (15)
C11—C12—C13—C140.7 (3)C11—C10—S1—N394.72 (14)
C11—C12—C13—C16−177.38 (18)C15—C10—S1—N3−87.00 (14)
D—H···AD—HH···AD···AD—H···A
N3—H1···O3i0.78 (2)2.06 (2)2.833 (2)170 (2)
N2—H1A···O30.87 (2)1.94 (2)2.648 (2)137 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H1⋯O3i0.78 (2)2.06 (2)2.833 (2)170 (2)
N2—H1A⋯O30.87 (2)1.94 (2)2.648 (2)137 (2)

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-[2-(1H-indol-3-yl)ethyl-iminiomethyl]-4-nitro-phenolate.

Authors:  Hapipah M Ali; M I Mohamed Mustafa; M Razali Rizal; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-26
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1.  (E)-2-[(2-Ethyl-phen-yl)iminiometh-yl]-6-hydroxy-phenolate.

Authors:  Serap Yazıcı; Ciğdem Albayrak; Ismail Gümrükçüoğlu; Ismet Senel; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-27
  1 in total

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