Literature DB >> 21201065

Diaqua-(2,5-di-4-pyridyl-1,3,4-thia-diazole-κN)bis-(thio-cyanato-κN)nickel(II) dihydrate.

Ming-Hua Yang1.   

Abstract

In the title mononuclear complex, [Ni(NCS)(2)(C(12)H(8)N(4)S)(2)(H(2)O)(2)]·2H(2)O, the Ni(II) atom is located on an inversion center and is octa-hedrally coordinated by four N atoms from two 2,5-di-4-pyridyl-1,3,4-thia-diazole (n class="Chemical">bpt) ligands and two thio-cyanate mol-ecules forming the equatorial plane; the axial positions are occupied by two O atoms of coordinated water mol-ecules. O-H⋯O, O-H⋯N and O-H⋯S hydrogen bonds, involving the uncoordinated water molecules, result in the formation of a sheet structure developing parallel to (021).

Entities:  

Year:  2008        PMID: 21201065      PMCID: PMC2959476          DOI: 10.1107/S1600536808030444

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ma & Yang (2008 ▶); Du et al. (2002 ▶); Dong et al. (2003 ▶); Gudbjarlson et al. (1991 ▶). For related literature, see: Su et al. (2005 ▶).

Experimental

Crystal data

[Ni(NCS)2(C12H8N4S)2(H2O)2]·2H2O M = 727.50 Triclinic, a = 7.0555 (11) Å b = 8.3034 (13) Å c = 14.849 (2) Å α = 104.629 (2)° β = 93.067 (2)° γ = 112.228 (2)° V = 768.3 (2) Å3 Z = 1 Mo Kα radiation μ = 0.95 mm−1 T = 298 (2) K 0.26 × 0.21 × 0.17 mm

Data collection

Bruker SMART diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.789, T max = 0.855 3967 measured reflections 2747 independent reflections 1810 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.143 S = 1.06 2747 reflections 205 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.51 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and CAMERON (Pearce et al., 2000 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808030444/dn2378sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808030444/dn2378Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(NCS)2(C12H8N4S)2(H2O)2]·2H2OZ = 1
Mr = 727.50F(000) = 374
Triclinic, P1Dx = 1.572 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.0555 (11) ÅCell parameters from 2721 reflections
b = 8.3034 (13) Åθ = 1.4–25.2°
c = 14.849 (2) ŵ = 0.96 mm1
α = 104.629 (2)°T = 298 K
β = 93.067 (2)°Block, green
γ = 112.228 (2)°0.26 × 0.21 × 0.17 mm
V = 768.3 (2) Å3
Bruker SMART diffractometer2747 independent reflections
Radiation source: fine-focus sealed tube1810 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 25.3°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→5
Tmin = 0.789, Tmax = 0.855k = −9→9
3967 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0643P)2 + 0.1149P] where P = (Fo2 + 2Fc2)/3
2747 reflections(Δ/σ)max < 0.001
205 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.51 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.50000.50000.50000.0397 (3)
S1−0.0367 (2)0.2796 (2)0.90422 (9)0.0507 (4)
S20.7893 (2)0.05582 (18)0.46356 (10)0.0499 (4)
N10.4008 (5)0.4385 (5)0.6282 (3)0.0370 (9)
N20.3264 (6)0.2926 (6)0.9413 (3)0.0507 (11)
N30.2307 (7)0.2566 (6)1.0167 (3)0.0512 (11)
N4−0.3536 (7)0.1274 (6)1.2103 (3)0.0530 (11)
N50.6832 (6)0.3540 (6)0.4939 (3)0.0439 (10)
O1W0.2492 (4)0.2685 (4)0.4104 (2)0.0456 (8)
H1WA0.13000.23240.42680.068*
H1WB0.26550.17510.37920.068*
C10.2114 (7)0.4119 (6)0.6465 (3)0.0448 (12)
H10.12170.42670.60420.054*
C20.1394 (7)0.3639 (7)0.7239 (3)0.0479 (13)
H20.00260.34090.73170.058*
C30.2717 (7)0.3502 (6)0.7897 (3)0.0392 (11)
C40.4712 (8)0.3790 (7)0.7725 (3)0.0490 (13)
H40.56560.36970.81490.059*
C50.5267 (7)0.4217 (7)0.6915 (3)0.0454 (12)
H50.66060.43990.68030.054*
C60.2059 (7)0.3069 (6)0.8769 (3)0.0408 (12)
C70.0422 (8)0.2485 (7)1.0080 (3)0.0435 (12)
C8−0.0933 (7)0.2144 (6)1.0799 (3)0.0395 (11)
C9−0.0247 (8)0.1812 (7)1.1595 (3)0.0514 (13)
H90.10900.18671.17040.062*
C10−0.1584 (8)0.1398 (8)1.2222 (4)0.0573 (15)
H10−0.11080.11911.27600.069*
C11−0.4142 (8)0.1632 (7)1.1355 (4)0.0516 (13)
H11−0.54770.15931.12730.062*
C12−0.2923 (7)0.2065 (7)1.0682 (3)0.0459 (12)
H12−0.34330.22981.01600.055*
C130.7270 (6)0.2306 (7)0.4811 (3)0.0366 (11)
O2W0.3283 (5)−0.0225 (5)0.3113 (2)0.0604 (10)
H2WA0.3641−0.05090.35830.091*
H2WB0.43420.02420.28710.091*
U11U22U33U12U13U23
Ni10.0396 (5)0.0406 (5)0.0449 (6)0.0187 (4)0.0124 (4)0.0176 (4)
S10.0513 (8)0.0705 (10)0.0435 (8)0.0301 (7)0.0153 (6)0.0290 (7)
S20.0508 (8)0.0442 (8)0.0686 (9)0.0269 (6)0.0198 (7)0.0260 (7)
N10.034 (2)0.039 (2)0.041 (2)0.0152 (17)0.0086 (17)0.0156 (18)
N20.046 (3)0.065 (3)0.045 (3)0.022 (2)0.013 (2)0.024 (2)
N30.051 (3)0.066 (3)0.042 (2)0.023 (2)0.015 (2)0.027 (2)
N40.051 (3)0.065 (3)0.046 (3)0.023 (2)0.017 (2)0.023 (2)
N50.045 (2)0.045 (2)0.055 (3)0.027 (2)0.0162 (19)0.022 (2)
O1W0.0367 (18)0.045 (2)0.053 (2)0.0146 (15)0.0120 (15)0.0130 (16)
C10.041 (3)0.054 (3)0.044 (3)0.018 (2)0.008 (2)0.024 (3)
C20.037 (3)0.058 (3)0.048 (3)0.014 (2)0.010 (2)0.024 (3)
C30.041 (3)0.036 (3)0.038 (3)0.011 (2)0.012 (2)0.010 (2)
C40.045 (3)0.066 (4)0.046 (3)0.027 (3)0.010 (2)0.026 (3)
C50.042 (3)0.057 (3)0.045 (3)0.024 (2)0.018 (2)0.021 (3)
C60.044 (3)0.039 (3)0.037 (3)0.014 (2)0.009 (2)0.012 (2)
C70.047 (3)0.046 (3)0.039 (3)0.018 (2)0.007 (2)0.015 (2)
C80.044 (3)0.038 (3)0.037 (3)0.016 (2)0.008 (2)0.013 (2)
C90.045 (3)0.067 (4)0.046 (3)0.022 (3)0.008 (2)0.024 (3)
C100.056 (3)0.076 (4)0.043 (3)0.024 (3)0.013 (3)0.026 (3)
C110.043 (3)0.055 (3)0.059 (4)0.021 (3)0.011 (3)0.019 (3)
C120.047 (3)0.053 (3)0.049 (3)0.026 (2)0.009 (2)0.025 (3)
C130.033 (3)0.046 (3)0.035 (3)0.016 (2)0.012 (2)0.018 (2)
O2W0.057 (2)0.061 (2)0.054 (2)0.0141 (18)0.0183 (17)0.0132 (19)
Ni1—N52.072 (4)C1—H10.9300
Ni1—N5i2.072 (4)C2—C31.371 (6)
Ni1—O1Wi2.116 (3)C2—H20.9300
Ni1—O1W2.116 (3)C3—C41.385 (6)
Ni1—N12.176 (4)C3—C61.481 (6)
Ni1—N1i2.176 (4)C4—C51.374 (6)
S1—C71.723 (5)C4—H40.9300
S1—C61.724 (5)C5—H50.9300
S2—C131.635 (5)C7—C81.480 (6)
N1—C11.325 (6)C8—C121.380 (6)
N1—C51.328 (6)C8—C91.383 (6)
N2—C61.304 (6)C9—C101.373 (7)
N2—N31.376 (5)C9—H90.9300
N3—C71.303 (6)C10—H100.9300
N4—C111.310 (6)C11—C121.382 (7)
N4—C101.340 (6)C11—H110.9300
N5—C131.153 (6)C12—H120.9300
O1W—H1WA0.8510O2W—H2WA0.8456
O1W—H1WB0.8497O2W—H2WB0.8472
C1—C21.371 (6)
N5—Ni1—N5i180.000 (2)C2—C3—C4117.8 (4)
N5—Ni1—O1Wi88.99 (14)C2—C3—C6121.6 (4)
N5i—Ni1—O1Wi91.01 (14)C4—C3—C6120.5 (4)
N5—Ni1—O1W91.01 (14)C5—C4—C3118.6 (4)
N5i—Ni1—O1W88.99 (14)C5—C4—H4120.7
O1Wi—Ni1—O1W180.0C3—C4—H4120.7
N5—Ni1—N191.17 (14)N1—C5—C4124.0 (4)
N5i—Ni1—N188.83 (14)N1—C5—H5118.0
O1Wi—Ni1—N186.52 (12)C4—C5—H5118.0
O1W—Ni1—N193.48 (13)N2—C6—C3123.7 (4)
N5—Ni1—N1i88.83 (14)N2—C6—S1113.8 (3)
N5i—Ni1—N1i91.17 (14)C3—C6—S1122.4 (4)
O1Wi—Ni1—N1i93.48 (13)N3—C7—C8123.5 (4)
O1W—Ni1—N1i86.52 (12)N3—C7—S1113.8 (3)
N1—Ni1—N1i180.000 (1)C8—C7—S1122.7 (4)
C7—S1—C687.2 (2)C12—C8—C9118.1 (4)
C1—N1—C5116.3 (4)C12—C8—C7121.8 (4)
C1—N1—Ni1122.2 (3)C9—C8—C7119.9 (4)
C5—N1—Ni1121.4 (3)C10—C9—C8118.5 (5)
C6—N2—N3112.5 (4)C10—C9—H9120.7
C7—N3—N2112.7 (4)C8—C9—H9120.7
C11—N4—C10116.8 (4)N4—C10—C9123.8 (5)
C13—N5—Ni1159.3 (4)N4—C10—H10118.1
Ni1—O1W—H1WA120.3C9—C10—H10118.1
Ni1—O1W—H1WB121.7N4—C11—C12124.1 (5)
H1WA—O1W—H1WB107.7N4—C11—H11117.9
N1—C1—C2124.1 (4)C12—C11—H11117.9
N1—C1—H1118.0C8—C12—C11118.6 (4)
C2—C1—H1118.0C8—C12—H12120.7
C1—C2—C3119.1 (5)C11—C12—H12120.7
C1—C2—H2120.5N5—C13—S2179.7 (4)
C3—C2—H2120.5H2WA—O2W—H2WB109.2
D—H···AD—HH···AD···AD—H···A
O1W—H1WB···O2W0.851.912.762 (5)175.
O2W—H2WB···N4ii0.852.002.833 (5)170.
O1W—H1WA···S2iii0.852.473.303 (3)166.
O2W—H2WA···S2iv0.852.923.540 (4)132.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WB⋯O2W0.851.912.762 (5)175
O2W—H2WB⋯N4i0.852.002.833 (5)170
O1W—H1WA⋯S2ii0.852.473.303 (3)166
O2W—H2WA⋯S2iii0.852.923.540 (4)132

Symmetry codes: (i) ; (ii) ; (iii) .

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