| Literature DB >> 21201065 |
Abstract
In the title mononuclear complex, [Ni(NCS)(2)(C(12)H(8)N(4)S)(2)(H(2)O)(2)]·2H(2)O, the Ni(II) atom is located on an inversion center and is octa-hedrally coordinated by four N atoms from two 2,5-di-4-pyridyl-1,3,4-thia-diazole (Entities:
Year: 2008 PMID: 21201065 PMCID: PMC2959476 DOI: 10.1107/S1600536808030444
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni(NCS)2(C12H8N4S)2(H2O)2]·2H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2721 reflections | |
| θ = 1.4–25.2° | |
| µ = 0.96 mm−1 | |
| α = 104.629 (2)° | |
| β = 93.067 (2)° | Block, green |
| γ = 112.228 (2)° | 0.26 × 0.21 × 0.17 mm |
| Bruker SMART diffractometer | 2747 independent reflections |
| Radiation source: fine-focus sealed tube | 1810 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.3°, θmin = 1.4° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | |
| 3967 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2747 reflections | (Δ/σ)max < 0.001 |
| 205 parameters | Δρmax = 0.39 e Å−3 |
| 0 restraints | Δρmin = −0.51 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| Ni1 | 0.5000 | 0.5000 | 0.5000 | 0.0397 (3) | |
| S1 | −0.0367 (2) | 0.2796 (2) | 0.90422 (9) | 0.0507 (4) | |
| S2 | 0.7893 (2) | 0.05582 (18) | 0.46356 (10) | 0.0499 (4) | |
| N1 | 0.4008 (5) | 0.4385 (5) | 0.6282 (3) | 0.0370 (9) | |
| N2 | 0.3264 (6) | 0.2926 (6) | 0.9413 (3) | 0.0507 (11) | |
| N3 | 0.2307 (7) | 0.2566 (6) | 1.0167 (3) | 0.0512 (11) | |
| N4 | −0.3536 (7) | 0.1274 (6) | 1.2103 (3) | 0.0530 (11) | |
| N5 | 0.6832 (6) | 0.3540 (6) | 0.4939 (3) | 0.0439 (10) | |
| O1W | 0.2492 (4) | 0.2685 (4) | 0.4104 (2) | 0.0456 (8) | |
| H1WA | 0.1300 | 0.2324 | 0.4268 | 0.068* | |
| H1WB | 0.2655 | 0.1751 | 0.3792 | 0.068* | |
| C1 | 0.2114 (7) | 0.4119 (6) | 0.6465 (3) | 0.0448 (12) | |
| H1 | 0.1217 | 0.4267 | 0.6042 | 0.054* | |
| C2 | 0.1394 (7) | 0.3639 (7) | 0.7239 (3) | 0.0479 (13) | |
| H2 | 0.0026 | 0.3409 | 0.7317 | 0.058* | |
| C3 | 0.2717 (7) | 0.3502 (6) | 0.7897 (3) | 0.0392 (11) | |
| C4 | 0.4712 (8) | 0.3790 (7) | 0.7725 (3) | 0.0490 (13) | |
| H4 | 0.5656 | 0.3697 | 0.8149 | 0.059* | |
| C5 | 0.5267 (7) | 0.4217 (7) | 0.6915 (3) | 0.0454 (12) | |
| H5 | 0.6606 | 0.4399 | 0.6803 | 0.054* | |
| C6 | 0.2059 (7) | 0.3069 (6) | 0.8769 (3) | 0.0408 (12) | |
| C7 | 0.0422 (8) | 0.2485 (7) | 1.0080 (3) | 0.0435 (12) | |
| C8 | −0.0933 (7) | 0.2144 (6) | 1.0799 (3) | 0.0395 (11) | |
| C9 | −0.0247 (8) | 0.1812 (7) | 1.1595 (3) | 0.0514 (13) | |
| H9 | 0.1090 | 0.1867 | 1.1704 | 0.062* | |
| C10 | −0.1584 (8) | 0.1398 (8) | 1.2222 (4) | 0.0573 (15) | |
| H10 | −0.1108 | 0.1191 | 1.2760 | 0.069* | |
| C11 | −0.4142 (8) | 0.1632 (7) | 1.1355 (4) | 0.0516 (13) | |
| H11 | −0.5477 | 0.1593 | 1.1273 | 0.062* | |
| C12 | −0.2923 (7) | 0.2065 (7) | 1.0682 (3) | 0.0459 (12) | |
| H12 | −0.3433 | 0.2298 | 1.0160 | 0.055* | |
| C13 | 0.7270 (6) | 0.2306 (7) | 0.4811 (3) | 0.0366 (11) | |
| O2W | 0.3283 (5) | −0.0225 (5) | 0.3113 (2) | 0.0604 (10) | |
| H2WA | 0.3641 | −0.0509 | 0.3583 | 0.091* | |
| H2WB | 0.4342 | 0.0242 | 0.2871 | 0.091* |
| Ni1 | 0.0396 (5) | 0.0406 (5) | 0.0449 (6) | 0.0187 (4) | 0.0124 (4) | 0.0176 (4) |
| S1 | 0.0513 (8) | 0.0705 (10) | 0.0435 (8) | 0.0301 (7) | 0.0153 (6) | 0.0290 (7) |
| S2 | 0.0508 (8) | 0.0442 (8) | 0.0686 (9) | 0.0269 (6) | 0.0198 (7) | 0.0260 (7) |
| N1 | 0.034 (2) | 0.039 (2) | 0.041 (2) | 0.0152 (17) | 0.0086 (17) | 0.0156 (18) |
| N2 | 0.046 (3) | 0.065 (3) | 0.045 (3) | 0.022 (2) | 0.013 (2) | 0.024 (2) |
| N3 | 0.051 (3) | 0.066 (3) | 0.042 (2) | 0.023 (2) | 0.015 (2) | 0.027 (2) |
| N4 | 0.051 (3) | 0.065 (3) | 0.046 (3) | 0.023 (2) | 0.017 (2) | 0.023 (2) |
| N5 | 0.045 (2) | 0.045 (2) | 0.055 (3) | 0.027 (2) | 0.0162 (19) | 0.022 (2) |
| O1W | 0.0367 (18) | 0.045 (2) | 0.053 (2) | 0.0146 (15) | 0.0120 (15) | 0.0130 (16) |
| C1 | 0.041 (3) | 0.054 (3) | 0.044 (3) | 0.018 (2) | 0.008 (2) | 0.024 (3) |
| C2 | 0.037 (3) | 0.058 (3) | 0.048 (3) | 0.014 (2) | 0.010 (2) | 0.024 (3) |
| C3 | 0.041 (3) | 0.036 (3) | 0.038 (3) | 0.011 (2) | 0.012 (2) | 0.010 (2) |
| C4 | 0.045 (3) | 0.066 (4) | 0.046 (3) | 0.027 (3) | 0.010 (2) | 0.026 (3) |
| C5 | 0.042 (3) | 0.057 (3) | 0.045 (3) | 0.024 (2) | 0.018 (2) | 0.021 (3) |
| C6 | 0.044 (3) | 0.039 (3) | 0.037 (3) | 0.014 (2) | 0.009 (2) | 0.012 (2) |
| C7 | 0.047 (3) | 0.046 (3) | 0.039 (3) | 0.018 (2) | 0.007 (2) | 0.015 (2) |
| C8 | 0.044 (3) | 0.038 (3) | 0.037 (3) | 0.016 (2) | 0.008 (2) | 0.013 (2) |
| C9 | 0.045 (3) | 0.067 (4) | 0.046 (3) | 0.022 (3) | 0.008 (2) | 0.024 (3) |
| C10 | 0.056 (3) | 0.076 (4) | 0.043 (3) | 0.024 (3) | 0.013 (3) | 0.026 (3) |
| C11 | 0.043 (3) | 0.055 (3) | 0.059 (4) | 0.021 (3) | 0.011 (3) | 0.019 (3) |
| C12 | 0.047 (3) | 0.053 (3) | 0.049 (3) | 0.026 (2) | 0.009 (2) | 0.025 (3) |
| C13 | 0.033 (3) | 0.046 (3) | 0.035 (3) | 0.016 (2) | 0.012 (2) | 0.018 (2) |
| O2W | 0.057 (2) | 0.061 (2) | 0.054 (2) | 0.0141 (18) | 0.0183 (17) | 0.0132 (19) |
| Ni1—N5 | 2.072 (4) | C1—H1 | 0.9300 |
| Ni1—N5i | 2.072 (4) | C2—C3 | 1.371 (6) |
| Ni1—O1Wi | 2.116 (3) | C2—H2 | 0.9300 |
| Ni1—O1W | 2.116 (3) | C3—C4 | 1.385 (6) |
| Ni1—N1 | 2.176 (4) | C3—C6 | 1.481 (6) |
| Ni1—N1i | 2.176 (4) | C4—C5 | 1.374 (6) |
| S1—C7 | 1.723 (5) | C4—H4 | 0.9300 |
| S1—C6 | 1.724 (5) | C5—H5 | 0.9300 |
| S2—C13 | 1.635 (5) | C7—C8 | 1.480 (6) |
| N1—C1 | 1.325 (6) | C8—C12 | 1.380 (6) |
| N1—C5 | 1.328 (6) | C8—C9 | 1.383 (6) |
| N2—C6 | 1.304 (6) | C9—C10 | 1.373 (7) |
| N2—N3 | 1.376 (5) | C9—H9 | 0.9300 |
| N3—C7 | 1.303 (6) | C10—H10 | 0.9300 |
| N4—C11 | 1.310 (6) | C11—C12 | 1.382 (7) |
| N4—C10 | 1.340 (6) | C11—H11 | 0.9300 |
| N5—C13 | 1.153 (6) | C12—H12 | 0.9300 |
| O1W—H1WA | 0.8510 | O2W—H2WA | 0.8456 |
| O1W—H1WB | 0.8497 | O2W—H2WB | 0.8472 |
| C1—C2 | 1.371 (6) | ||
| N5—Ni1—N5i | 180.000 (2) | C2—C3—C4 | 117.8 (4) |
| N5—Ni1—O1Wi | 88.99 (14) | C2—C3—C6 | 121.6 (4) |
| N5i—Ni1—O1Wi | 91.01 (14) | C4—C3—C6 | 120.5 (4) |
| N5—Ni1—O1W | 91.01 (14) | C5—C4—C3 | 118.6 (4) |
| N5i—Ni1—O1W | 88.99 (14) | C5—C4—H4 | 120.7 |
| O1Wi—Ni1—O1W | 180.0 | C3—C4—H4 | 120.7 |
| N5—Ni1—N1 | 91.17 (14) | N1—C5—C4 | 124.0 (4) |
| N5i—Ni1—N1 | 88.83 (14) | N1—C5—H5 | 118.0 |
| O1Wi—Ni1—N1 | 86.52 (12) | C4—C5—H5 | 118.0 |
| O1W—Ni1—N1 | 93.48 (13) | N2—C6—C3 | 123.7 (4) |
| N5—Ni1—N1i | 88.83 (14) | N2—C6—S1 | 113.8 (3) |
| N5i—Ni1—N1i | 91.17 (14) | C3—C6—S1 | 122.4 (4) |
| O1Wi—Ni1—N1i | 93.48 (13) | N3—C7—C8 | 123.5 (4) |
| O1W—Ni1—N1i | 86.52 (12) | N3—C7—S1 | 113.8 (3) |
| N1—Ni1—N1i | 180.000 (1) | C8—C7—S1 | 122.7 (4) |
| C7—S1—C6 | 87.2 (2) | C12—C8—C9 | 118.1 (4) |
| C1—N1—C5 | 116.3 (4) | C12—C8—C7 | 121.8 (4) |
| C1—N1—Ni1 | 122.2 (3) | C9—C8—C7 | 119.9 (4) |
| C5—N1—Ni1 | 121.4 (3) | C10—C9—C8 | 118.5 (5) |
| C6—N2—N3 | 112.5 (4) | C10—C9—H9 | 120.7 |
| C7—N3—N2 | 112.7 (4) | C8—C9—H9 | 120.7 |
| C11—N4—C10 | 116.8 (4) | N4—C10—C9 | 123.8 (5) |
| C13—N5—Ni1 | 159.3 (4) | N4—C10—H10 | 118.1 |
| Ni1—O1W—H1WA | 120.3 | C9—C10—H10 | 118.1 |
| Ni1—O1W—H1WB | 121.7 | N4—C11—C12 | 124.1 (5) |
| H1WA—O1W—H1WB | 107.7 | N4—C11—H11 | 117.9 |
| N1—C1—C2 | 124.1 (4) | C12—C11—H11 | 117.9 |
| N1—C1—H1 | 118.0 | C8—C12—C11 | 118.6 (4) |
| C2—C1—H1 | 118.0 | C8—C12—H12 | 120.7 |
| C1—C2—C3 | 119.1 (5) | C11—C12—H12 | 120.7 |
| C1—C2—H2 | 120.5 | N5—C13—S2 | 179.7 (4) |
| C3—C2—H2 | 120.5 | H2WA—O2W—H2WB | 109.2 |
| H··· | ||||
| O1W—H1WB···O2W | 0.85 | 1.91 | 2.762 (5) | 175. |
| O2W—H2WB···N4ii | 0.85 | 2.00 | 2.833 (5) | 170. |
| O1W—H1WA···S2iii | 0.85 | 2.47 | 3.303 (3) | 166. |
| O2W—H2WA···S2iv | 0.85 | 2.92 | 3.540 (4) | 132. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.85 | 1.91 | 2.762 (5) | 175 |
| O2 | 0.85 | 2.00 | 2.833 (5) | 170 |
| O1 | 0.85 | 2.47 | 3.303 (3) | 166 |
| O2 | 0.85 | 2.92 | 3.540 (4) | 132 |
Symmetry codes: (i) ; (ii) ; (iii) .