Literature DB >> 21202060

Three-dimensional network in piper-azine-1,4-diium-picrate-piperazine (1/2/1).

Zhong-Long Wang, Li-Hui Jia.   

Abstract

In the title compound, C(4)H(12)N(2) (2+)·2C(6)pan class="Species">H(2)N(3)O(7) (-)·C(4)H(10)N(2), the piperazine-1,4-diium cations and piperazine mol-ecules lie on crystallographic inversion centres. In the crystal structure, inter-molecular N-H⋯O and N-H⋯N hydrogen bonds link the components to form two-dimensional layers parallel to the (001) plane. These layers are, in turn, connected by weak inter-molecular C-H⋯O hydrogen bonds and π-π stacking inter-actions [centroid-centroid distance between parallel aryl rings = 3.764 (2) Å, interplanar spacing = 3.500 (2) Å and ring offset = 1.387 (2) Å], forming a three-dimensional framework.

Entities:  

Year:  2008        PMID: 21202060      PMCID: PMC2960966          DOI: 10.1107/S1600536808005710

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Akutagawa et al. (2003 ▶); Anitha et al. (2006a ▶,b ▶); Arnaud et al. (2007 ▶); Colquhoun et al. (1986 ▶); Hundal et al. (1997 ▶); Kavitha et al. (2005 ▶, 2006 ▶); Ma et al. (2005 ▶); Szumna et al. (2000 ▶); Vembu et al. (2003 ▶).

Experimental

Crystal data

C4H12N2 2+·2C6H2N3O7 −·C4H10N2 M = 630.50 Triclinic, a = 7.7150 (6) Å b = 8.1658 (6) Å c = 11.3024 (8) Å α = 98.140 (1)° β = 98.974 (1)° γ = 109.250 (1)° V = 649.62 (8) Å3 Z = 1 Mo Kα radiation μ = 0.14 mm−1 T = 299 (2) K 0.20 × 0.10 × 0.06 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.963, T max = 0.992 6131 measured reflections 2258 independent reflections 1917 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.169 S = 1.13 2258 reflections 208 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808005710/lh2598sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808005710/lh2598Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H12N22+·2C6H2N3O7·C4H10N2Z = 1
Mr = 630.50F000 = 328
Triclinic, P1Dx = 1.612 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 7.7150 (6) ÅCell parameters from 2518 reflections
b = 8.1658 (6) Åθ = 2.7–26.2º
c = 11.3024 (8) ŵ = 0.14 mm1
α = 98.140 (1)ºT = 299 (2) K
β = 98.974 (1)ºPlate, yellow
γ = 109.250 (1)º0.20 × 0.10 × 0.06 mm
V = 649.62 (8) Å3
Bruker SMART APEX CCD area-detector diffractometer2258 independent reflections
Radiation source: fine focus sealed Siemens Mo tube1917 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.028
T = 299(2) Kθmax = 25.0º
0.3° wide ω exposures scansθmin = 2.7º
Absorption correction: multi-scan(SADABS; Sheldrick, 1997)h = −9→9
Tmin = 0.963, Tmax = 0.992k = −9→9
6131 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.068H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.169  w = 1/[σ2(Fo2) + (0.0397P)2 + 1.340P] where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max < 0.001
2258 reflectionsΔρmax = 0.27 e Å3
208 parametersΔρmin = −0.27 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1576 (5)0.8052 (4)0.9002 (3)0.0332 (8)
C20.2353 (5)0.7965 (5)1.0152 (3)0.0378 (9)
H20.22960.68831.03480.045*
C30.3230 (5)0.9530 (5)1.1019 (3)0.0348 (8)
C40.3317 (5)1.1141 (5)1.0738 (3)0.0380 (9)
H40.39121.21811.13290.046*
C50.2518 (5)1.1200 (5)0.9578 (3)0.0371 (8)
C60.1526 (5)0.9660 (5)0.8609 (3)0.0333 (8)
C70.1883 (5)1.0168 (5)0.4896 (3)0.0392 (9)
H7A0.30731.00680.52260.047*
H7B0.19711.05700.41320.047*
C80.0332 (5)0.8378 (5)0.4654 (3)0.0381 (9)
H8A0.05490.75610.40340.046*
H8B0.03370.79120.53970.046*
C90.3474 (5)1.5596 (5)0.4793 (4)0.0405 (9)
H9A0.41241.68690.49380.049*
H9B0.21331.53520.45810.049*
C100.5940 (5)1.5299 (5)0.6247 (3)0.0386 (9)
H10A0.62101.48480.69760.046*
H10B0.66391.65660.64250.046*
N10.0732 (4)0.6390 (4)0.8092 (3)0.0405 (8)
N20.4143 (5)0.9504 (4)1.2226 (3)0.0443 (8)
N30.2705 (6)1.2965 (4)0.9349 (3)0.0528 (9)
N40.1521 (4)1.1476 (4)0.5768 (3)0.0364 (7)
H4A0.157 (6)1.118 (5)0.647 (4)0.044*
H4B0.228 (6)1.255 (6)0.584 (4)0.044*
N50.3922 (5)1.4953 (4)0.5905 (3)0.0383 (7)
H5A0.359 (6)1.548 (5)0.649 (4)0.046*
O10.0655 (4)0.9638 (4)0.7581 (2)0.0471 (7)
O20.1103 (5)0.6367 (4)0.7077 (3)0.0579 (8)
O3−0.0265 (5)0.5088 (4)0.8379 (3)0.0720 (10)
O40.4179 (6)0.8106 (4)1.2447 (3)0.0925 (14)
O50.4870 (5)1.0892 (4)1.2985 (3)0.0599 (9)
O60.3035 (6)1.4152 (4)1.0227 (3)0.0831 (12)
O70.2583 (6)1.3203 (4)0.8304 (3)0.0799 (12)
U11U22U33U12U13U23
C10.0349 (19)0.0294 (18)0.0331 (19)0.0089 (15)0.0063 (15)0.0074 (15)
C20.044 (2)0.0331 (19)0.036 (2)0.0137 (17)0.0052 (17)0.0123 (16)
C30.041 (2)0.039 (2)0.0265 (18)0.0153 (16)0.0073 (15)0.0104 (15)
C40.043 (2)0.0330 (19)0.037 (2)0.0147 (16)0.0079 (16)0.0037 (15)
C50.048 (2)0.034 (2)0.0346 (19)0.0204 (17)0.0097 (17)0.0113 (15)
C60.0357 (19)0.038 (2)0.0319 (19)0.0159 (16)0.0114 (16)0.0127 (15)
C70.0343 (19)0.041 (2)0.043 (2)0.0122 (16)0.0077 (16)0.0143 (17)
C80.045 (2)0.0317 (19)0.040 (2)0.0151 (16)0.0065 (17)0.0120 (16)
C90.035 (2)0.0284 (18)0.055 (2)0.0098 (15)0.0019 (17)0.0097 (17)
C100.047 (2)0.0268 (18)0.0346 (19)0.0065 (16)0.0011 (16)0.0090 (15)
N10.0443 (19)0.0374 (18)0.0353 (18)0.0124 (15)0.0026 (14)0.0059 (14)
N20.052 (2)0.0418 (19)0.0361 (18)0.0139 (16)0.0038 (15)0.0122 (15)
N30.081 (3)0.0366 (19)0.045 (2)0.0290 (18)0.0066 (18)0.0097 (16)
N40.0375 (17)0.0305 (16)0.0325 (17)0.0015 (13)0.0018 (13)0.0119 (13)
N50.0465 (19)0.0312 (16)0.0364 (17)0.0113 (14)0.0139 (14)0.0050 (13)
O10.0584 (17)0.0417 (15)0.0355 (15)0.0130 (13)−0.0024 (13)0.0163 (12)
O20.083 (2)0.0518 (18)0.0359 (16)0.0215 (16)0.0153 (15)0.0029 (13)
O30.082 (2)0.0404 (17)0.070 (2)−0.0071 (16)0.0138 (18)0.0096 (16)
O40.140 (4)0.0456 (19)0.063 (2)0.017 (2)−0.035 (2)0.0223 (17)
O50.082 (2)0.0534 (19)0.0335 (15)0.0252 (17)−0.0068 (15)−0.0042 (14)
O60.150 (4)0.0452 (19)0.061 (2)0.053 (2)0.010 (2)0.0046 (16)
O70.142 (4)0.0444 (19)0.049 (2)0.030 (2)0.005 (2)0.0194 (15)
C1—C21.366 (5)C9—N51.465 (5)
C1—C61.454 (5)C9—C10ii1.504 (5)
C1—N11.461 (5)C9—H9A0.9700
C2—C31.385 (5)C9—H9B0.9700
C2—H20.9300C10—N51.465 (5)
C3—C41.380 (5)C10—C9ii1.504 (5)
C3—N21.441 (5)C10—H10A0.9700
C4—C51.373 (5)C10—H10B0.9700
C4—H40.9300N1—O31.210 (4)
C5—C61.442 (5)N1—O21.224 (4)
C5—N31.464 (5)N2—O41.210 (4)
C6—O11.243 (4)N2—O51.221 (4)
C7—N41.475 (5)N3—O61.215 (4)
C7—C81.508 (5)N3—O71.219 (4)
C7—H7A0.9700N4—C8i1.484 (5)
C7—H7B0.9700N4—H4A0.86 (4)
C8—N4i1.484 (5)N4—H4B0.86 (4)
C8—H8A0.9700N5—H5A0.86 (4)
C8—H8B0.9700
C2—C1—C6125.4 (3)N5—C9—C10ii110.2 (3)
C2—C1—N1117.1 (3)N5—C9—H9A109.6
C6—C1—N1117.5 (3)C10ii—C9—H9A109.6
C1—C2—C3118.3 (3)N5—C9—H9B109.6
C1—C2—H2120.8C10ii—C9—H9B109.6
C3—C2—H2120.8H9A—C9—H9B108.1
C4—C3—C2121.2 (3)N5—C10—C9ii109.1 (3)
C4—C3—N2118.7 (3)N5—C10—H10A109.9
C2—C3—N2120.0 (3)C9ii—C10—H10A109.9
C5—C4—C3119.5 (3)N5—C10—H10B109.9
C5—C4—H4120.2C9ii—C10—H10B109.9
C3—C4—H4120.2H10A—C10—H10B108.3
C4—C5—C6124.3 (3)O3—N1—O2122.7 (3)
C4—C5—N3116.0 (3)O3—N1—C1118.9 (3)
C6—C5—N3119.7 (3)O2—N1—C1118.3 (3)
O1—C6—C5126.4 (3)O4—N2—O5122.3 (3)
O1—C6—C1122.4 (3)O4—N2—C3118.7 (3)
C5—C6—C1111.1 (3)O5—N2—C3119.0 (3)
N4—C7—C8110.9 (3)O6—N3—O7122.6 (4)
N4—C7—H7A109.5O6—N3—C5117.9 (3)
C8—C7—H7A109.5O7—N3—C5119.5 (3)
N4—C7—H7B109.5C7—N4—C8i112.2 (3)
C8—C7—H7B109.5C7—N4—H4A109 (3)
H7A—C7—H7B108.0C8i—N4—H4A109 (3)
N4i—C8—C7110.4 (3)C7—N4—H4B114 (3)
N4i—C8—H8A109.6C8i—N4—H4B102 (3)
C7—C8—H8A109.6H4A—N4—H4B110 (4)
N4i—C8—H8B109.6C10—N5—C9110.9 (3)
C7—C8—H8B109.6C10—N5—H5A109 (3)
H8A—C8—H8B108.1C9—N5—H5A109 (3)
C6—C1—C2—C3−2.3 (6)N4—C7—C8—N4i55.1 (4)
N1—C1—C2—C3177.5 (3)C2—C1—N1—O344.6 (5)
C1—C2—C3—C40.2 (6)C6—C1—N1—O3−135.6 (4)
C1—C2—C3—N2−177.1 (3)C2—C1—N1—O2−133.7 (4)
C2—C3—C4—C50.2 (6)C6—C1—N1—O246.1 (5)
N2—C3—C4—C5177.5 (3)C4—C3—N2—O4−175.0 (4)
C3—C4—C5—C61.6 (6)C2—C3—N2—O42.4 (6)
C3—C4—C5—N3−178.8 (3)C4—C3—N2—O54.3 (5)
C4—C5—C6—O1173.8 (4)C2—C3—N2—O5−178.4 (4)
N3—C5—C6—O1−5.7 (6)C4—C5—N3—O6−20.6 (6)
C4—C5—C6—C1−3.2 (5)C6—C5—N3—O6159.0 (4)
N3—C5—C6—C1177.2 (3)C4—C5—N3—O7157.2 (4)
C2—C1—C6—O1−173.5 (4)C6—C5—N3—O7−23.2 (6)
N1—C1—C6—O16.7 (5)C8—C7—N4—C8i−56.1 (4)
C2—C1—C6—C53.7 (5)C9ii—C10—N5—C9−58.5 (4)
N1—C1—C6—C5−176.1 (3)C10ii—C9—N5—C1059.1 (4)
D—H···AD—HH···AD···AD—H···A
N4—H4A···O10.86 (4)1.95 (4)2.745 (4)153 (4)
N4—H4A···O70.86 (4)2.31 (4)2.870 (5)123 (3)
N4—H4B···N50.86 (4)1.94 (4)2.799 (4)176 (4)
N5—H5A···O2iii0.86 (4)2.41 (4)3.153 (5)145 (4)
C2—H2···O6iv0.932.473.335 (5)155
C7—H7B···O1i0.972.523.211 (5)128
C8—H8B···O10.972.603.267 (5)127
C8—H8B···O20.972.523.458 (5)162
C9—H9A···O5v0.972.603.272 (5)127
C10—H10A···O4vi0.972.523.310 (5)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4A⋯O10.86 (4)1.95 (4)2.745 (4)153 (4)
N4—H4A⋯O70.86 (4)2.31 (4)2.870 (5)123 (3)
N4—H4B⋯N50.86 (4)1.94 (4)2.799 (4)176 (4)
N5—H5A⋯O2i0.86 (4)2.41 (4)3.153 (5)145 (4)
C2—H2⋯O6ii0.932.473.335 (5)155
C7—H7B⋯O1iii0.972.523.211 (5)128
C8—H8B⋯O10.972.603.267 (5)127
C8—H8B⋯O20.972.523.458 (5)162
C9—H9A⋯O5iv0.972.603.272 (5)127
C10—H10A⋯O4v0.972.523.310 (5)138

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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